Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0016944

Physical Location & Seq

Genomic Coordinates Forward (+)

11337765 .. 11338309

Gene Structure 545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGAATAAGAGCAAAGGCTCTTGTTTGTTATCATGCAAAGGAGTTAGTCAGTATGCATGTAAGCTTAAGTTATGGAGATTTTTAGATAGGTTGTCTTGTCAAAGCTCGAATTATCAAGGCTACGACGAGAAACGGCAGAATTTGATTCGGAGAATCGATTTCGCTTGGGCTGTGGAGAATGACGAGAACAAGAAGCAGAAGAAGAGTTCGAAAGAGAGCACGGCGACGCAGGGGCAATGGCAGAGCATGGTGGAGAACTTGCAGCTGGCGCACCAGGAGCTCTCCGTTATCATAGATCTTAACACTAAACAAACGATGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0016592 GO:0019222 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko04919 map04919

Pfam Domains

Protein Families

Med17

Protein Analysis

108

Amino Acids

12.42

Weight (kDa)

9.28

Isoelectric Point (pI)

59.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016944)

Species	Orthologous Gene IDs
malus_domestica	MD05G1006700.v1.1
pyrus_communis	pycom13g18460 pycom16g15400
rosa_chinensis	RchiOBHm_Chr1g0378821 RchiOBHm_Chr3g0486301
rosa_laevigata	RLG00000015986
rosa_multiflora	Rmu_co8445899.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152310
rosa_samantha	Rh2AG042400 Rh2BG040900 Rh2DG041400 Rh2DG041500 Rh3AG274500 Rh4DG222600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	139
AflII	CTTAAG	1 cut(s)	65
AjnI	CCWGG	1 cut(s)	273
AluBI	AGCT	4 cut(s)	64, 105, 265, 280
AluI	AGCT	4 cut(s)	64, 105, 265, 280
Alw21I	GWGCWC	2 cut(s)	221, 282
ApeKI	GCWGC	1 cut(s)	262
ApoI	RAATTY	1 cut(s)	139
AspLEI	GCGC	1 cut(s)	271
AsuII	TTCGAA	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	282
Bbv12I	GWGCWC	2 cut(s)	221, 282
BbvI	GCAGC	1 cut(s)	274
BceAI	ACGGC	2 cut(s)	149, 237
BciT130I	CCWGG	1 cut(s)	275
BfrI	CTTAAG	1 cut(s)	65
BglII	AGATCT	1 cut(s)	295
BisI	GCNGC	1 cut(s)	263
BlsI	GCNGC	1 cut(s)	264
Bme1390I	CCNGG	1 cut(s)	275
BmrFI	CCNGG	1 cut(s)	275
Bpu14I	TTCGAA	1 cut(s)	209
Bsa29I	ATCGAT	1 cut(s)	156
Bse3DI	GCAATG	1 cut(s)	242
BseBI	CCWGG	1 cut(s)	275
BseCI	ATCGAT	1 cut(s)	156
BseMI	GCAATG	1 cut(s)	242
BseXI	GCAGC	1 cut(s)	274
BshVI	ATCGAT	1 cut(s)	156
BsiHKAI	GWGCWC	2 cut(s)	221, 282
Bsp119I	TTCGAA	1 cut(s)	209
Bsp1286I	GDGCHC	2 cut(s)	221, 282
Bsp143I	GATC	1 cut(s)	295
BspDI	ATCGAT	1 cut(s)	156
BspT104I	TTCGAA	1 cut(s)	209
BspTI	CTTAAG	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	242
BssMI	GATC	1 cut(s)	295
Bst2UI	CCWGG	1 cut(s)	275
Bst6I	CTCTTC	1 cut(s)	197
BstAFI	CTTAAG	1 cut(s)	65
BstBI	TTCGAA	1 cut(s)	209
BstC8I	GCNNGC	1 cut(s)	267
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	1 cut(s)	298
BstMBI	GATC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	2 cut(s)	268, 277
BstNI	CCWGG	1 cut(s)	275
BstNSI	RCATGY	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	273
BstV1I	GCAGC	1 cut(s)	274
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
Bsu15I	ATCGAT	1 cut(s)	156
BsuTUI	ATCGAT	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	267
CfoI	GCGC	1 cut(s)	271
ClaI	ATCGAT	1 cut(s)	156
CseI	GACGC	1 cut(s)	235
CviAII	CATG	3 cut(s)	33, 57, 247
CviJI	RGCY	7 cut(s)	18, 64, 105, 120, 170, 265, 280
CviKI_1	RGCY	7 cut(s)	18, 64, 105, 120, 170, 265, 280
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
Eam1104I	CTCTTC	1 cut(s)	197
EarI	CTCTTC	1 cut(s)	197
Ecl136II	GAGCTC	1 cut(s)	280
Eco24I	GRGCYC	1 cut(s)	282
Eco53kI	GAGCTC	1 cut(s)	280
EcoICRI	GAGCTC	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	273
EcoT22I	ATGCAT	1 cut(s)	58
EcoT38I	GRGCYC	1 cut(s)	282
FaeI	CATG	3 cut(s)	36, 60, 250
FaiI	YATR	6 cut(s)	34, 54, 58, 73, 248, 293
FatI	CATG	3 cut(s)	32, 56, 246
Fnu4HI	GCNGC	1 cut(s)	263
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	1 cut(s)	263
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	1 cut(s)	263
HgaI	GACGC	1 cut(s)	235
HhaI	GCGC	1 cut(s)	271
Hin1II	CATG	3 cut(s)	36, 60, 250
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	2 cut(s)	145, 153
Hpy188I	TCNGA	1 cut(s)	150
Hpy99I	CGWCG	2 cut(s)	128, 229
HpyCH4V	TGCA	3 cut(s)	36, 56, 262
HpyF10VI	GCNNNNNNNGC	2 cut(s)	268, 277
Hsp92II	CATG	3 cut(s)	36, 60, 250
HspAI	GCGC	1 cut(s)	269
Kzo9I	GATC	1 cut(s)	295
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	4 cut(s)	215, 251, 260, 287
Lsp1109I	GCAGC	1 cut(s)	274
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MboII	GAAGA	2 cut(s)	211, 214
MflI	RGATCY	1 cut(s)	295
MhlI	GDGCHC	2 cut(s)	221, 282
MluCI	AATT	2 cut(s)	109, 139
Mph1103I	ATGCAT	1 cut(s)	58
MseI	TTAA	2 cut(s)	66, 300
MspA1I	CMGCKG	1 cut(s)	265
MspCI	CTTAAG	1 cut(s)	65
MspR9I	CCNGG	1 cut(s)	275
MvaI	CCWGG	1 cut(s)	275
MwoI	GCNNNNNNNGC	2 cut(s)	268, 277
NdeII	GATC	1 cut(s)	295
NlaIII	CATG	3 cut(s)	36, 60, 250
NsiI	ATGCAT	1 cut(s)	58
NspI	RCATGY	1 cut(s)	60
NspV	TTCGAA	1 cut(s)	209
PfeI	GAWTC	2 cut(s)	145, 153
PkrI	GCNGC	1 cut(s)	264
Psp124BI	GAGCTC	1 cut(s)	282
Psp6I	CCWGG	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	273
PsuI	RGATCY	1 cut(s)	295
PvuII	CAGCTG	1 cut(s)	265
SacI	GAGCTC	1 cut(s)	282
SaqAI	TTAA	2 cut(s)	66, 300
SatI	GCNGC	1 cut(s)	263
Sau3AI	GATC	1 cut(s)	295
ScrFI	CCNGG	1 cut(s)	275
SduI	GDGCHC	2 cut(s)	221, 282
SetI	ASST	5 cut(s)	66, 92, 107, 267, 282
SfuI	TTCGAA	1 cut(s)	209
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	2 cut(s)	109, 139
SstI	GAGCTC	1 cut(s)	282
StyD4I	CCNGG	1 cut(s)	273
TaqI	TCGA	3 cut(s)	107, 156, 209
TasI	AATT	2 cut(s)	109, 139
TfiI	GAWTC	2 cut(s)	145, 153
Tru1I	TTAA	2 cut(s)	66, 300
Tru9I	TTAA	2 cut(s)	66, 300
TseI	GCWGC	1 cut(s)	262
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	274
Vha464I	CTTAAG	1 cut(s)	65
XapI	RAATTY	1 cut(s)	139
XceI	RCATGY	1 cut(s)	60
Zsp2I	ATGCAT	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.