pycom16g15420

UPF0613 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0008083
Physical Location & Seq
Forward (+)
11372417 .. 11376769
4353 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1029 bp
ATGAATCGCTCGCTGTCTGCGTCGTCTTCGTCTTCTTCTTCGTCGTCTTCCTCCGGTTCTTGGTTCTCCGGCGTAGTCCGGGGCCGGTCCGACCGGGCCGGGTCTGTCAAGATGGGAGCAGACTCCGTTTCGGGCGGTTCCGGCGACCATTCCGGTCCCGTTGTGCGGAAGAATCAGTTCCGGGGTGTGCTCTTCAAGTACGGCCCCAAACCTATTGAGGTTGCATTTAAAACAGGTGATTATAGACAGCAAGTCATTTTTATTGGTGGATTGACTGATGGTTTTCTGGCAACAGAATACTTGGAACCTCTTGCAATTGCTTTGGACAAGGAGAAATGGTCACTTGTTCAACCTCTGTTGTCATCTTCATACAGTGGATATGGCACTTCCAGCTTGAAACAAGATGCAATTGAACTTGATCAGCTGATCAGTCACTTTATAAACAAAGAAGATTCCGAGGGTGTGGTACTGCTTGGCCATAGTACTGGCTGTCAGGATATTGTACATTATATGCGCACAAATGCTGCATGCTCCCGAGCGGTTCGTGCTGCCATTTTGCAGGCCCCAGTCAGTGATCGGGAATACAGAGCAACTCTTCCTGAAACAGCTGCTATGATTGACTTGGCTTCAACCATGATTACTGAAGGACGTGGTTCAGAATTAATGCCAAGTGCAGCTGATCCAGGAGCCCCAATAACCGCCTATCGGTATCACTCCCTTTGTGCATACAACGGGGATGATGACATGTTTAGTTCTGACCTTACTGATGACCAGCTGAGGCTGAGACTCGGGCACATGACTAACACACCGTGCCAGGTTATATTTTCCATGGCTGATGAATATGTGCCAGACTATGTTGACAAGAAAGCACTGGTTCAAAGATTGTGCAAAGCTTTGGGTGGTGCTGAGAAAGTTGAAATCGAATACGGGAATCACTCCCTGTCCAACAGAGTTGATGAAGCTGTCCATGCCATCATCGATTTTGTTAAAAGAGATGGACCGAAAGGCTGGGATGATCCATGGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1749

Protein Analysis

343

Amino Acids

37.14

Weight (kDa)

5.5

Isoelectric Point (pI)

36.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1749 PF08538 60 - 325 6.6e-66 Protein of unknown function (DUF1749)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 440
Acc16I TGCGCA 1 cut(s) 515
AccBSI CCGCTC 1 cut(s) 539
AciI CCGC 4 cut(s) 135, 166, 539, 699
AclWI GGATC 2 cut(s) 674, 1010
AcoI YGGCCR 1 cut(s) 475
AcuI CTGAAG 1 cut(s) 663
AdeI CACNNNGTG 1 cut(s) 810
AfaI GTAC 4 cut(s) 200, 468, 484, 504
AfiI CCNNNNNNNGG 3 cut(s) 60, 165, 705
AflIII ACRYGT 1 cut(s) 744
AgsI TTSAA 7 cut(s) 196, 350, 397, 413, 630, 878, 917
AhdI GACNNNNNGTC 1 cut(s) 251
AjiI CACGTC 1 cut(s) 650
AjnI CCWGG 2 cut(s) 682, 813
AluBI AGCT 7 cut(s) 393, 424, 608, 677, 775, 893, 962
AluI AGCT 7 cut(s) 393, 424, 608, 677, 775, 893, 962
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 1 cut(s) 778
AlwI GGATC 2 cut(s) 674, 1010
Ama87I CYCGRG 2 cut(s) 534, 788
AoxI GGCC 5 cut(s) 82, 96, 202, 475, 561
ApeKI GCWGC 4 cut(s) 524, 548, 608, 674
AseI ATTAAT 1 cut(s) 662
Asp700I GAANNNNTTC 1 cut(s) 176
AspLEI GCGC 1 cut(s) 516
AspS9I GGNCC 7 cut(s) 82, 87, 96, 155, 203, 562, 998
AsuC2I CCSGG 4 cut(s) 80, 95, 100, 182
AsuHPI GGTGA 1 cut(s) 248
AvaI CYCGRG 2 cut(s) 534, 788
AvaII GGWCC 3 cut(s) 87, 155, 998
BaeGI GKGCMC 1 cut(s) 795
BalI TGGCCA 1 cut(s) 477
BanII GRGCYC 1 cut(s) 691
BbsI GAAGAC 3 cut(s) 18, 24, 39
Bbv12I GWGCWC 1 cut(s) 192
BbvCI CCTCAGC 1 cut(s) 776
BbvI GCAGC 4 cut(s) 511, 535, 595, 686
BccI CCATC 4 cut(s) 106, 272, 980, 989
BceAI ACGGC 1 cut(s) 217
BciT130I CCWGG 2 cut(s) 684, 815
BclI TGATCA 2 cut(s) 418, 426
BcnI CCSGG 4 cut(s) 80, 95, 100, 182
BcoDI GTCTC 1 cut(s) 778
BisI GCNGC 4 cut(s) 525, 549, 609, 675
BlsI GCNGC 4 cut(s) 526, 550, 610, 676
BmcAI AGTACT 1 cut(s) 484
Bme1390I CCNGG 6 cut(s) 80, 95, 100, 182, 684, 815
Bme18I GGWCC 3 cut(s) 87, 155, 998
BmeRI GACNNNNNGTC 1 cut(s) 251
BmeT110I CYCGRG 2 cut(s) 534, 788
BmgBI CACGTC 1 cut(s) 650
BmgT120I GGNCC 7 cut(s) 82, 87, 96, 155, 203, 562, 998
BmiI GGNNCC 7 cut(s) 83, 139, 157, 205, 306, 564, 688
BmrFI CCNGG 6 cut(s) 80, 95, 100, 182, 684, 815
BmrI ACTGGG 1 cut(s) 560
BmsI GCATC 1 cut(s) 394
BmuI ACTGGG 1 cut(s) 560
BpiI GAAGAC 3 cut(s) 18, 24, 39
Bpu10I CCTNAGC 1 cut(s) 776
BpuMI CCSGG 4 cut(s) 80, 95, 100, 182
Bsa29I ATCGAT 1 cut(s) 978
BsaJI CCNNGG 5 cut(s) 79, 181, 456, 828, 1019
BsaWI WCCGGW 2 cut(s) 53, 152
BsaXI ACNNNNNCTCC 2 cut(s) 323, 353
Bsc4I CCNNNNNNNGG 3 cut(s) 60, 165, 705
Bse118I RCCGGY 1 cut(s) 84
Bse1I ACTGG 3 cut(s) 490, 566, 876
BseBI CCWGG 2 cut(s) 684, 815
BseCI ATCGAT 1 cut(s) 978
BseDI CCNNGG 5 cut(s) 79, 181, 456, 828, 1019
BseGI GGATG 2 cut(s) 742, 1018
BseLI CCNNNNNNNGG 3 cut(s) 60, 165, 705
BseMII CTCAG 3 cut(s) 767, 773, 897
BseNI ACTGG 3 cut(s) 490, 566, 876
BseSI GKGCMC 1 cut(s) 795
BseXI GCAGC 4 cut(s) 511, 535, 595, 686
BseYI CCCAGC 1 cut(s) 1008
BsgI GTGCAG 1 cut(s) 693
Bsh1285I CGRYCG 1 cut(s) 94
BshFI GGCC 5 cut(s) 84, 98, 204, 477, 563
BshVI ATCGAT 1 cut(s) 978
BsiEI CGRYCG 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 192
BsiHKCI CYCGRG 2 cut(s) 534, 788
BsiSI CCGG 9 cut(s) 54, 69, 79, 85, 94, 99, 141, 153, 181
BslFI GGGAC 1 cut(s) 141
BslI CCNNNNNNNGG 3 cut(s) 60, 165, 705
BsmAI GTCTC 1 cut(s) 778
BsmFI GGGAC 1 cut(s) 141
BsnI GGCC 5 cut(s) 84, 98, 204, 477, 563
BsoBI CYCGRG 2 cut(s) 534, 788
Bsp1286I GDGCHC 3 cut(s) 192, 691, 795
Bsp1407I TGTACA 1 cut(s) 502
Bsp143I GATC 5 cut(s) 418, 426, 574, 679, 1015
Bsp19I CCATGG 2 cut(s) 828, 1019
BspACI CCGC 4 cut(s) 135, 166, 539, 699
BspANI GGCC 5 cut(s) 84, 98, 204, 477, 563
BspCNI CTCAG 3 cut(s) 768, 774, 898
BspDI ATCGAT 1 cut(s) 978
BspLI GGNNCC 7 cut(s) 83, 139, 157, 205, 306, 564, 688
BspPI GGATC 2 cut(s) 674, 1010
BspQI GCTCTTC 1 cut(s) 197
BsrBI CCGCTC 1 cut(s) 539
BsrFI RCCGGY 1 cut(s) 84
BsrGI TGTACA 1 cut(s) 502
BsrI ACTGG 3 cut(s) 490, 566, 876
BssAI RCCGGY 1 cut(s) 84
BssECI CCNNGG 5 cut(s) 79, 181, 456, 828, 1019
BssMI GATC 5 cut(s) 418, 426, 574, 679, 1015
BssT1I CCWWGG 2 cut(s) 828, 1019
Bst2UI CCWGG 2 cut(s) 684, 815
Bst4CI ACNGT 2 cut(s) 374, 810
Bst6I CTCTTC 2 cut(s) 197, 600
BstAUI TGTACA 1 cut(s) 502
BstC8I GCNNGC 3 cut(s) 11, 529, 561
BstDEI CTNAG 3 cut(s) 776, 782, 906
BstDSI CCRYGG 2 cut(s) 828, 1019
BstF5I GGATG 2 cut(s) 742, 1018
BstHHI GCGC 1 cut(s) 516
BstKTI GATC 5 cut(s) 421, 429, 577, 682, 1018
BstMAI GTCTC 1 cut(s) 778
BstMBI GATC 5 cut(s) 418, 426, 574, 679, 1015
BstMCI CGRYCG 1 cut(s) 94
BstMWI GCNNNNNNNGC 4 cut(s) 141, 390, 545, 968
BstNI CCWGG 2 cut(s) 684, 815
BstNSI RCATGY 2 cut(s) 531, 748
BstSCI CCNGG 6 cut(s) 78, 93, 98, 180, 682, 813
BstSLI GKGCMC 1 cut(s) 795
BstV1I GCAGC 4 cut(s) 511, 535, 595, 686
BstV2I GAAGAC 3 cut(s) 18, 24, 39
BstXI CCANNNNNNTGG 1 cut(s) 485
Bsu15I ATCGAT 1 cut(s) 978
BsuRI GGCC 5 cut(s) 84, 98, 204, 477, 563
BsuTUI ATCGAT 1 cut(s) 978
BtgI CCRYGG 2 cut(s) 828, 1019
BtrI CACGTC 1 cut(s) 650
BtsCI GGATG 2 cut(s) 742, 1018
BtsIMutI CAGTG 3 cut(s) 379, 577, 869
Cac8I GCNNGC 3 cut(s) 11, 529, 561
CfoI GCGC 1 cut(s) 516
Cfr10I RCCGGY 1 cut(s) 84
Cfr13I GGNCC 7 cut(s) 82, 87, 96, 155, 203, 562, 998
ClaI ATCGAT 1 cut(s) 978
CpoI CGGWCCG 1 cut(s) 87
CseI GACGC 1 cut(s) 9
Csp6I GTAC 4 cut(s) 199, 467, 483, 503
CspI CGGWCCG 1 cut(s) 87
CviAII CATG 7 cut(s) 528, 634, 745, 796, 829, 968, 1020
CviQI GTAC 4 cut(s) 199, 467, 483, 503
DdeI CTNAG 3 cut(s) 776, 782, 906
DpnI GATC 5 cut(s) 420, 428, 576, 681, 1017
DpnII GATC 5 cut(s) 418, 426, 574, 679, 1015
DraI TTTAAA 1 cut(s) 229
DraIII CACNNNGTG 1 cut(s) 810
DriI GACNNNNNGTC 1 cut(s) 251
EaeI YGGCCR 1 cut(s) 475
Eam1104I CTCTTC 2 cut(s) 197, 600
Eam1105I GACNNNNNGTC 1 cut(s) 251
EarI CTCTTC 2 cut(s) 197, 600
Eco130I CCWWGG 2 cut(s) 828, 1019
Eco24I GRGCYC 1 cut(s) 691
Eco47I GGWCC 3 cut(s) 87, 155, 998
Eco57I CTGAAG 1 cut(s) 663
Eco88I CYCGRG 2 cut(s) 534, 788
EcoO109I RGGNCCY 1 cut(s) 562
EcoRII CCWGG 2 cut(s) 682, 813
EcoT14I CCWWGG 2 cut(s) 828, 1019
EcoT38I GRGCYC 1 cut(s) 691
ErhI CCWWGG 2 cut(s) 828, 1019
FaeI CATG 7 cut(s) 531, 637, 748, 799, 832, 971, 1023
FaqI GGGAC 1 cut(s) 141
FatI CATG 7 cut(s) 527, 633, 744, 795, 828, 967, 1019
FbaI TGATCA 2 cut(s) 418, 426
Fnu4HI GCNGC 4 cut(s) 525, 549, 609, 675
FokI GGATG 2 cut(s) 749, 1025
FriOI GRGCYC 1 cut(s) 691
Fsp4HI GCNGC 4 cut(s) 525, 549, 609, 675
FspAI RTGCGCAY 1 cut(s) 515
FspI TGCGCA 1 cut(s) 515
GlaI GCGC 1 cut(s) 515
GluI GCNGC 4 cut(s) 525, 549, 609, 675
GsaI CCCAGC 1 cut(s) 1012
HaeIII GGCC 5 cut(s) 84, 98, 204, 477, 563
HapII CCGG 9 cut(s) 54, 69, 79, 85, 94, 99, 141, 153, 181
HgaI GACGC 1 cut(s) 9
HhaI GCGC 1 cut(s) 516
Hin1II CATG 7 cut(s) 531, 637, 748, 799, 832, 971, 1023
Hin6I GCGC 1 cut(s) 514
HinP1I GCGC 1 cut(s) 514
HincII GTYRAC 1 cut(s) 859
HindII GTYRAC 1 cut(s) 859
HindIII AAGCTT 1 cut(s) 891
HinfI GANTC 6 cut(s) 4, 122, 172, 452, 786, 931
HpaII CCGG 9 cut(s) 54, 69, 79, 85, 94, 99, 141, 153, 181
HphI GGTGA 1 cut(s) 248
Hpy166II GTNNAC 1 cut(s) 859
Hpy188I TCNGA 4 cut(s) 91, 457, 658, 757
Hpy188III TCNNGA 5 cut(s) 109, 494, 534, 578, 599
Hpy8I GTNNAC 1 cut(s) 859
Hpy99I CGWCG 2 cut(s) 25, 46
HpyAV CCTTC 1 cut(s) 638
HpyCH4III ACNGT 2 cut(s) 374, 810
HpyCH4IV ACGT 1 cut(s) 649
HpyCH4V TGCA 8 cut(s) 224, 314, 407, 527, 559, 674, 725, 888
HpyF10VI GCNNNNNNNGC 4 cut(s) 141, 390, 545, 968
HpyF3I CTNAG 3 cut(s) 776, 782, 906
HpySE526I ACGT 1 cut(s) 649
Hsp92II CATG 7 cut(s) 531, 637, 748, 799, 832, 971, 1023
HspAI GCGC 1 cut(s) 514
Ksp22I TGATCA 2 cut(s) 418, 426
Kzo9I GATC 5 cut(s) 418, 426, 574, 679, 1015
LguI GCTCTTC 1 cut(s) 197
LmnI GCTCC 3 cut(s) 116, 536, 686
Lsp1109I GCAGC 4 cut(s) 511, 535, 595, 686
LweI GCATC 1 cut(s) 394
MaeII ACGT 1 cut(s) 649
MaeIII GTNAC 2 cut(s) 339, 431
MalI GATC 5 cut(s) 420, 428, 576, 681, 1017
MbiI CCGCTC 1 cut(s) 539
MboI GATC 5 cut(s) 418, 426, 574, 679, 1015
MfeI CAATTG 2 cut(s) 315, 408
MhlI GDGCHC 3 cut(s) 192, 691, 795
MlsI TGGCCA 1 cut(s) 477
MluCI AATT 3 cut(s) 315, 408, 659
MluNI TGGCCA 1 cut(s) 477
MlyI GAGTC 2 cut(s) 116, 780
MmeI TCCRAC 2 cut(s) 114, 969
MnlI CCTC 6 cut(s) 61, 211, 318, 363, 451, 771
Mox20I TGGCCA 1 cut(s) 477
MroXI GAANNNNTTC 1 cut(s) 176
MscI TGGCCA 1 cut(s) 477
MseI TTAA 3 cut(s) 228, 662, 987
Msp20I TGGCCA 1 cut(s) 477
MspA1I CMGCKG 4 cut(s) 424, 608, 677, 775
MspI CCGG 9 cut(s) 54, 69, 79, 85, 94, 99, 141, 153, 181
MspR9I CCNGG 6 cut(s) 80, 95, 100, 182, 684, 815
MunI CAATTG 2 cut(s) 315, 408
MvaI CCWGG 2 cut(s) 684, 815
MwoI GCNNNNNNNGC 4 cut(s) 141, 390, 545, 968
NciI CCSGG 4 cut(s) 80, 95, 100, 182
NcoI CCATGG 2 cut(s) 828, 1019
NdeII GATC 5 cut(s) 418, 426, 574, 679, 1015
NlaIII CATG 7 cut(s) 531, 637, 748, 799, 832, 971, 1023
NlaIV GGNNCC 7 cut(s) 83, 139, 157, 205, 306, 564, 688
NmuCI GTSAC 2 cut(s) 339, 431
NsbI TGCGCA 1 cut(s) 515
NspI RCATGY 2 cut(s) 531, 748
PaeI GCATGC 1 cut(s) 531
PciI ACATGT 1 cut(s) 744
PciSI GCTCTTC 1 cut(s) 197
PcsI WCGNNNNNNNCGW 1 cut(s) 17
PdmI GAANNNNTTC 1 cut(s) 176
PfeI GAWTC 4 cut(s) 4, 172, 452, 931
PfoI TCCNGGA 1 cut(s) 682
PkrI GCNGC 4 cut(s) 526, 550, 610, 676
PleI GAGTC 2 cut(s) 116, 780
PpsI GAGTC 2 cut(s) 116, 780
PscI ACATGT 1 cut(s) 744
PshBI ATTAAT 1 cut(s) 662
PsiI TTATAA 1 cut(s) 440
Psp6I CCWGG 2 cut(s) 682, 813
PspFI CCCAGC 1 cut(s) 1008
PspGI CCWGG 2 cut(s) 682, 813
PspN4I GGNNCC 7 cut(s) 83, 139, 157, 205, 306, 564, 688
PspPI GGNCC 7 cut(s) 82, 87, 96, 155, 203, 562, 998
PvuII CAGCTG 4 cut(s) 424, 608, 677, 775
RsaI GTAC 4 cut(s) 200, 468, 484, 504
RsaNI GTAC 4 cut(s) 199, 467, 483, 503
Rsr2I CGGWCCG 1 cut(s) 87
RsrII CGGWCCG 1 cut(s) 87
SapI GCTCTTC 1 cut(s) 197
SaqAI TTAA 3 cut(s) 228, 662, 987
SatI GCNGC 4 cut(s) 525, 549, 609, 675
Sau3AI GATC 5 cut(s) 418, 426, 574, 679, 1015
Sau96I GGNCC 7 cut(s) 82, 87, 96, 155, 203, 562, 998
ScaI AGTACT 1 cut(s) 484
SchI GAGTC 2 cut(s) 116, 780
ScrFI CCNGG 6 cut(s) 80, 95, 100, 182, 684, 815
SduI GDGCHC 3 cut(s) 192, 691, 795
SfaNI GCATC 1 cut(s) 394
SinI GGWCC 3 cut(s) 87, 155, 998
SphI GCATGC 1 cut(s) 531
Sse9I AATT 3 cut(s) 315, 408, 659
SsiI CCGC 4 cut(s) 135, 166, 539, 699
StyD4I CCNGG 6 cut(s) 78, 93, 98, 180, 682, 813
StyI CCWWGG 2 cut(s) 828, 1019
TaaI ACNGT 2 cut(s) 374, 810
TaiI ACGT 1 cut(s) 652
TaqI TCGA 2 cut(s) 921, 978
TaqII GACCGA 1 cut(s) 1015
TasI AATT 3 cut(s) 315, 408, 659
TatI WGTACW 2 cut(s) 482, 502
TfiI GAWTC 4 cut(s) 4, 172, 452, 931
Tru1I TTAA 3 cut(s) 228, 662, 987
Tru9I TTAA 3 cut(s) 228, 662, 987
TscAI CASTG 3 cut(s) 379, 577, 876
TseFI GTSAC 2 cut(s) 339, 431
TseI GCWGC 4 cut(s) 524, 548, 608, 674
Tsp45I GTSAC 2 cut(s) 339, 431
TspDTI ATGAA 4 cut(s) 17, 357, 852, 972
TspGWI ACGGA 1 cut(s) 115
TspRI CASTG 3 cut(s) 379, 577, 876
VpaK11BI GGWCC 3 cut(s) 87, 155, 998
VspI ATTAAT 1 cut(s) 662
XceI RCATGY 2 cut(s) 531, 748
XmnI GAANNNNTTC 1 cut(s) 176
ZrmI AGTACT 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.