pycom16g16500

Protein of unknown function (DUF1677)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0012208
Physical Location & Seq
Reverse (-)
12381651 .. 12382193
543 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 543 bp
ATGAAGCAACCAAGCGAGCAACACATCTCAATAGAGAAAACAAATGAAAAGAAATCCCACTTTCTACCCCATCATTGCAATCCAATCCAACAAATAAAAACATCTCACTTTTCTCTTGAATCCCTTCACAATTCATCAGAGCCTTGCTACTCAGCTAAGCAGAAAACAAAGGAAAAAAGAAAAAGAATGGAGATTGAGATGGTGAGGTGTGAGTGTTGTGGACTAAAAGAGGATTGCACGCAAGACTACATCACACAAGTGAAGGCAAAGTTTGATGGGAAATGGCTGTGTGGGTTGTGCTCGGAAGCAGTGAGAGATGAGGTTGGCAAAGGCAGCAAGCAGCCATTTGGCATGGAGGAAGCTGTGAAGGCACACATGTCATTTTGTGGTAAATTCAAATCCAACCCTGCAGTGAGAGTGGCAGATGGGATGAGGCAGATGCTTAGGAGAAGGTCAGACATGTCATCTTCTTCTTCATCGCCAAAAAAGTACACAAGATCAGCAAGCACATCCCAAGTGGGCGATTCATCATCTTTCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1677

Protein Analysis

181

Amino Acids

20.35

Weight (kDa)

9.22

Isoelectric Point (pI)

70.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1677 PF07911 65 - 153 1.3e-37 Protein of unknown function (DUF1677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22540 AT4G14819
fragaria_vesca FvH4_4g16260
malus_domestica MD07G1114800.v1.1 MD13G1195100.v1.1 MD16G1195800.v1.1
prunus_persica Prupe.1G015800_v2.0.a1
pyrus_communis pycom13g16730 pycom16g16500
rosa_chinensis RchiOBHm_Chr4g0415821
rosa_laevigata RLG00000008037
rosa_multiflora Rmu_sc0002438.1_g000024
rosa_roxburghii Rroxscaffold_5G00359670
rosa_rugosa Rorug04G0137000
rosa_samantha Rh4AG198200 Rh4BG196200 Rh4CG209300 Rh4DG196000
rosa_wichuraiana Rw4G016810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 392
AfaI GTAC 1 cut(s) 491
AflIII ACRYGT 2 cut(s) 375, 459
AgsI TTSAA 2 cut(s) 119, 397
AleI CACNNNNGTG 1 cut(s) 257
AluBI AGCT 2 cut(s) 155, 362
AluI AGCT 2 cut(s) 155, 362
Alw21I GWGCWC 1 cut(s) 302
ApeKI GCWGC 2 cut(s) 333, 340
ApoI RAATTY 1 cut(s) 392
Asp700I GAANNNNTTC 1 cut(s) 123
AsuHPI GGTGA 1 cut(s) 214
Bbv12I GWGCWC 1 cut(s) 302
BbvI GCAGC 2 cut(s) 345, 352
BccI CCATC 4 cut(s) 78, 193, 269, 419
BfmI CTRYAG 1 cut(s) 408
BisI GCNGC 2 cut(s) 334, 341
BlpI GCTNAGC 1 cut(s) 156
BlsI GCNGC 2 cut(s) 335, 342
BmsI GCATC 1 cut(s) 429
Bpu10I CCTNAGC 1 cut(s) 443
Bpu1102I GCTNAGC 1 cut(s) 156
Bse3DI GCAATG 1 cut(s) 73
BseGI GGATG 2 cut(s) 435, 509
BseMI GCAATG 1 cut(s) 73
BseMII CTCAG 1 cut(s) 165
BseXI GCAGC 2 cut(s) 345, 352
BsiHKAI GWGCWC 1 cut(s) 302
Bsp1286I GDGCHC 1 cut(s) 302
Bsp143I GATC 1 cut(s) 497
Bsp1720I GCTNAGC 1 cut(s) 156
BspCNI CTCAG 1 cut(s) 164
BspHI TCATGA 1 cut(s) 539
BspMAI CTGCAG 1 cut(s) 412
BsrDI GCAATG 1 cut(s) 73
BssMI GATC 1 cut(s) 497
BstC8I GCNNGC 4 cut(s) 17, 239, 338, 505
BstDEI CTNAG 3 cut(s) 151, 156, 443
BstF5I GGATG 2 cut(s) 435, 509
BstKTI GATC 1 cut(s) 500
BstMBI GATC 1 cut(s) 497
BstMWI GCNNNNNNNGC 2 cut(s) 333, 368
BstNSI RCATGY 2 cut(s) 379, 463
BstSFI CTRYAG 1 cut(s) 408
BstV1I GCAGC 2 cut(s) 345, 352
BtgZI GCGATG 1 cut(s) 462
BtsCI GGATG 2 cut(s) 435, 509
BtsI GCAGTG 2 cut(s) 315, 417
BtsIMutI CAGTG 2 cut(s) 315, 417
Cac8I GCNNGC 4 cut(s) 17, 239, 338, 505
CciI TCATGA 1 cut(s) 539
Csp6I GTAC 1 cut(s) 490
CviAII CATG 4 cut(s) 352, 376, 460, 540
CviJI RGCY 5 cut(s) 142, 155, 286, 343, 362
CviKI_1 RGCY 5 cut(s) 142, 155, 286, 343, 362
CviQI GTAC 1 cut(s) 490
DdeI CTNAG 3 cut(s) 151, 156, 443
DpnI GATC 1 cut(s) 499
DpnII GATC 1 cut(s) 497
FaeI CATG 4 cut(s) 355, 379, 463, 543
FaiI YATR 4 cut(s) 353, 377, 461, 541
FatI CATG 4 cut(s) 351, 375, 459, 539
Fnu4HI GCNGC 2 cut(s) 334, 341
FokI GGATG 2 cut(s) 442, 496
Fsp4HI GCNGC 2 cut(s) 334, 341
GluI GCNGC 2 cut(s) 334, 341
Hin1II CATG 4 cut(s) 355, 379, 463, 543
HinfI GANTC 2 cut(s) 119, 524
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 2 cut(s) 221, 492
Hpy188I TCNGA 3 cut(s) 139, 304, 457
Hpy188III TCNNGA 2 cut(s) 116, 540
Hpy8I GTNNAC 2 cut(s) 221, 492
HpyAV CCTTC 4 cut(s) 134, 256, 361, 444
HpyCH4V TGCA 3 cut(s) 78, 237, 410
HpyF10VI GCNNNNNNNGC 2 cut(s) 333, 368
HpyF3I CTNAG 3 cut(s) 151, 156, 443
Hsp92II CATG 4 cut(s) 355, 379, 463, 543
Kzo9I GATC 1 cut(s) 497
LpnPI CCDG 1 cut(s) 420
Lsp1109I GCAGC 2 cut(s) 345, 352
LweI GCATC 1 cut(s) 429
MalI GATC 1 cut(s) 499
MboI GATC 1 cut(s) 497
MboII GAAGA 3 cut(s) 459, 462, 465
MhlI GDGCHC 1 cut(s) 302
MluCI AATT 2 cut(s) 130, 392
MmeI TCCRAC 2 cut(s) 112, 426
MnlI CCTC 5 cut(s) 198, 223, 313, 349, 426
MroXI GAANNNNTTC 1 cut(s) 123
MslI CAYNNNNRTG 1 cut(s) 257
MwoI GCNNNNNNNGC 2 cut(s) 333, 368
NdeII GATC 1 cut(s) 497
NlaIII CATG 4 cut(s) 355, 379, 463, 543
NspI RCATGY 2 cut(s) 379, 463
OliI CACNNNNGTG 1 cut(s) 257
PagI TCATGA 1 cut(s) 539
PciI ACATGT 2 cut(s) 375, 459
PdmI GAANNNNTTC 1 cut(s) 123
PfeI GAWTC 2 cut(s) 119, 524
PkrI GCNGC 2 cut(s) 335, 342
PscI ACATGT 2 cut(s) 375, 459
PstI CTGCAG 1 cut(s) 412
RsaI GTAC 1 cut(s) 491
RsaNI GTAC 1 cut(s) 490
RseI CAYNNNNRTG 1 cut(s) 257
SatI GCNGC 2 cut(s) 334, 341
Sau3AI GATC 1 cut(s) 497
SduI GDGCHC 1 cut(s) 302
SetI ASST 5 cut(s) 157, 209, 324, 364, 455
SfaNI GCATC 1 cut(s) 429
SfcI CTRYAG 1 cut(s) 408
SmiMI CAYNNNNRTG 1 cut(s) 257
Sse9I AATT 2 cut(s) 130, 392
TasI AATT 2 cut(s) 130, 392
TatI WGTACW 1 cut(s) 489
TfiI GAWTC 2 cut(s) 119, 524
TscAI CASTG 2 cut(s) 315, 417
TseI GCWGC 2 cut(s) 333, 340
TspDTI ATGAA 5 cut(s) 17, 60, 123, 465, 516
TspRI CASTG 2 cut(s) 315, 417
XapI RAATTY 1 cut(s) 392
XceI RCATGY 2 cut(s) 379, 463
XmnI GAANNNNTTC 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.