pycom16g16850

Dymeclin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0008749
Physical Location & Seq
Forward (+)
12862448 .. 12865885
3438 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g16850.1

Sequence Viewer

Length: 789 bp
ATGGGAGCCGTGCCTTCTACGCCGCGCTGGGGCAGCAGAAGCAGCTTCGCCGCGCGCCCACTTGACACGGCGGAGTACCTTATTACTACCTTCATCGGCGACGAGTCGTTTCCGATATCCTCCGATTTCTGGAATAAACTCCTCGAACTCCCTCTCAATCTCCAGTGGCAGCCTGACCGCGTTCATCAAGCTTGCCAGACTCTCGCACAAAACAACTATCATACCAGGCATCTTGCAAAGATTTTGATCCACATGGCATGGTGTTTGCAAGAATCGATTTCAACTTCTTCTAGTGCGCGTTCTCTTGTTTATATGAAGGCTGTAAATGCAGTGTACATCTCATCCATCTTTCTAAAGTACTTCATTGAAAATGCAAAGGACGAGAAGATTGAAGAGTTGCATTTATCCCTTGATGAAAGTGAGCCAATGCCAACAGATATTTCAAAAGTGACAGGGACTGAAGAGAAGATTGGTTTGAATGAAGCTGATGACGACTGTTGTCTACATGCTGCTGAAGACTTTGTTTTTCTTCTGCAAACTCGTTCCTTCTCTACCATCCTTCTGAGTTCAATTATGTCTGTGTTTCATCTTTCATTTGGTTTGGTTATCTTTGAAGTTTTTGCCTTCCTTCTCTACCATCTTTCCGAGTTCAACCATGTGTTTTATCTTTTATTTGGTTTGGTTATCTTTATTACCTGGGTACTCCACCATCTTTCTGAGTTCAATTATGTTTATGTTCCTTTTTTGTTGGTTTATTTATCTTTATTACCTGGGTTAGGCTTCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dymeclin

Protein Analysis

263

Amino Acids

29.96

Weight (kDa)

5.17

Isoelectric Point (pI)

52.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dymeclin PF09742 1 - 145 1.8e-20 Dyggve-Melchior-Clausen syndrome protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 502
AccII CGCG 5 cut(s) 25, 53, 55, 180, 298
AciI CCGC 4 cut(s) 23, 51, 71, 178
AclWI GGATC 1 cut(s) 241
AcuI CTGAAG 2 cut(s) 480, 534
AfaI GTAC 4 cut(s) 77, 335, 359, 702
AfiI CCNNNNNNNGG 3 cut(s) 29, 129, 776
AgsI TTSAA 9 cut(s) 282, 368, 392, 444, 478, 570, 614, 652, 724
AjnI CCWGG 3 cut(s) 224, 695, 769
AjuI GAANNNNNNNTTGG 4 cut(s) 424, 453, 456, 485
AluBI AGCT 3 cut(s) 45, 191, 485
AluI AGCT 3 cut(s) 45, 191, 485
AlwI GGATC 1 cut(s) 241
AlwNI CAGNNNCTG 1 cut(s) 458
ApeKI GCWGC 4 cut(s) 33, 42, 169, 509
AspLEI GCGC 4 cut(s) 27, 55, 57, 298
BbsI GAAGAC 1 cut(s) 522
BbvI GCAGC 4 cut(s) 45, 54, 181, 496
BccI CCATC 4 cut(s) 353, 563, 645, 717
BceAI ACGGC 1 cut(s) 84
BciT130I CCWGG 3 cut(s) 226, 697, 771
BfaI CTAG 1 cut(s) 291
BisI GCNGC 6 cut(s) 23, 34, 43, 51, 170, 510
BlsI GCNGC 6 cut(s) 24, 35, 44, 52, 171, 511
BmcAI AGTACT 1 cut(s) 359
Bme1390I CCNGG 3 cut(s) 226, 697, 771
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 3 cut(s) 226, 697, 771
BmsI GCATC 1 cut(s) 238
BoxI GACNNNNGTC 1 cut(s) 498
BpiI GAAGAC 1 cut(s) 522
BpmI CTGGAG 1 cut(s) 146
Bsa29I ATCGAT 1 cut(s) 275
BsaBI GATNNNNATC 1 cut(s) 245
BsaJI CCNNGG 2 cut(s) 696, 770
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 129, 776
Bse1I ACTGG 1 cut(s) 163
Bse8I GATNNNNATC 1 cut(s) 245
BseBI CCWGG 3 cut(s) 226, 697, 771
BseCI ATCGAT 1 cut(s) 275
BseDI CCNNGG 2 cut(s) 696, 770
BseGI GGATG 2 cut(s) 341, 555
BseJI GATNNNNATC 1 cut(s) 245
BseLI CCNNNNNNNGG 3 cut(s) 29, 129, 776
BseMII CTCAG 2 cut(s) 554, 708
BseNI ACTGG 1 cut(s) 163
BsePI GCGCGC 1 cut(s) 53
BseRI GAGGAG 1 cut(s) 131
BseXI GCAGC 4 cut(s) 45, 54, 181, 496
BseYI CCCAGC 1 cut(s) 27
Bsh1236I CGCG 5 cut(s) 25, 53, 55, 180, 298
BshVI ATCGAT 1 cut(s) 275
BslFI GGGAC 1 cut(s) 469
BslI CCNNNNNNNGG 3 cut(s) 29, 129, 776
BsmFI GGGAC 1 cut(s) 469
Bsp1407I TGTACA 1 cut(s) 333
Bsp143I GATC 1 cut(s) 246
BspACI CCGC 4 cut(s) 23, 51, 71, 178
BspCNI CTCAG 2 cut(s) 555, 709
BspDI ATCGAT 1 cut(s) 275
BspFNI CGCG 5 cut(s) 25, 53, 55, 180, 298
BspLI GGNNCC 1 cut(s) 7
BspPI GGATC 1 cut(s) 241
BsrGI TGTACA 1 cut(s) 333
BsrI ACTGG 1 cut(s) 163
BssECI CCNNGG 2 cut(s) 696, 770
BssHII GCGCGC 1 cut(s) 53
BssMI GATC 1 cut(s) 246
Bst2UI CCWGG 3 cut(s) 226, 697, 771
Bst4CI ACNGT 1 cut(s) 497
Bst6I CTCTTC 2 cut(s) 387, 456
BstAUI TGTACA 1 cut(s) 333
BstC8I GCNNGC 2 cut(s) 55, 193
BstDEI CTNAG 2 cut(s) 563, 717
BstENI CCTNNNNNAGG 1 cut(s) 774
BstF5I GGATG 2 cut(s) 341, 555
BstFNI CGCG 5 cut(s) 25, 53, 55, 180, 298
BstHHI GCGC 4 cut(s) 27, 55, 57, 298
BstKTI GATC 1 cut(s) 249
BstMBI GATC 1 cut(s) 246
BstMWI GCNNNNNNNGC 5 cut(s) 19, 33, 39, 42, 326
BstNI CCWGG 3 cut(s) 226, 697, 771
BstNSI RCATGY 1 cut(s) 509
BstPAI GACNNNNGTC 1 cut(s) 498
BstSCI CCNGG 3 cut(s) 224, 695, 769
BstUI CGCG 5 cut(s) 25, 53, 55, 180, 298
BstV1I GCAGC 4 cut(s) 45, 54, 181, 496
BstV2I GAAGAC 1 cut(s) 522
Bsu15I ATCGAT 1 cut(s) 275
BsuTUI ATCGAT 1 cut(s) 275
BtsCI GGATG 2 cut(s) 341, 555
BtsI GCAGTG 1 cut(s) 336
BtsIMutI CAGTG 2 cut(s) 170, 336
Cac8I GCNNGC 2 cut(s) 55, 193
CaiI CAGNNNCTG 1 cut(s) 458
CfoI GCGC 4 cut(s) 27, 55, 57, 298
ClaI ATCGAT 1 cut(s) 275
Csp6I GTAC 4 cut(s) 76, 334, 358, 701
CviAII CATG 4 cut(s) 253, 258, 506, 656
CviJI RGCY 8 cut(s) 8, 45, 172, 191, 320, 424, 485, 780
CviKI_1 RGCY 8 cut(s) 8, 45, 172, 191, 320, 424, 485, 780
CviQI GTAC 4 cut(s) 76, 334, 358, 701
DdeI CTNAG 2 cut(s) 563, 717
DpnI GATC 1 cut(s) 248
DpnII GATC 1 cut(s) 246
Eam1104I CTCTTC 2 cut(s) 387, 456
EarI CTCTTC 2 cut(s) 387, 456
EciI GGCGGA 1 cut(s) 86
Eco32I GATATC 1 cut(s) 117
Eco57I CTGAAG 2 cut(s) 480, 534
EcoNI CCTNNNNNAGG 1 cut(s) 774
EcoRII CCWGG 3 cut(s) 224, 695, 769
EcoRV GATATC 1 cut(s) 117
FaeI CATG 4 cut(s) 256, 261, 509, 659
FaqI GGGAC 1 cut(s) 469
FatI CATG 4 cut(s) 252, 257, 505, 655
FblI GTMKAC 1 cut(s) 502
Fnu4HI GCNGC 6 cut(s) 23, 34, 43, 51, 170, 510
FokI GGATG 2 cut(s) 328, 542
Fsp4HI GCNGC 6 cut(s) 23, 34, 43, 51, 170, 510
FspBI CTAG 1 cut(s) 291
GlaI GCGC 4 cut(s) 26, 54, 56, 297
GluI GCNGC 6 cut(s) 23, 34, 43, 51, 170, 510
GsaI CCCAGC 1 cut(s) 31
GsuI CTGGAG 1 cut(s) 146
HhaI GCGC 4 cut(s) 27, 55, 57, 298
Hin1II CATG 4 cut(s) 256, 261, 509, 659
Hin6I GCGC 4 cut(s) 25, 53, 55, 296
HinP1I GCGC 4 cut(s) 25, 53, 55, 296
HindIII AAGCTT 1 cut(s) 189
HinfI GANTC 3 cut(s) 104, 199, 272
Hpy166II GTNNAC 2 cut(s) 334, 503
Hpy188I TCNGA 5 cut(s) 114, 124, 564, 646, 718
Hpy188III TCNNGA 1 cut(s) 130
Hpy8I GTNNAC 2 cut(s) 334, 503
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 7 cut(s) 24, 100, 310, 556, 569, 634, 638
HpyCH4III ACNGT 1 cut(s) 497
HpyCH4V TGCA 6 cut(s) 236, 268, 329, 374, 400, 535
HpyF10VI GCNNNNNNNGC 5 cut(s) 19, 33, 39, 42, 326
HpyF3I CTNAG 2 cut(s) 563, 717
Hsp92II CATG 4 cut(s) 256, 261, 509, 659
HspAI GCGC 4 cut(s) 25, 53, 55, 296
Kzo9I GATC 1 cut(s) 246
LmnI GCTCC 1 cut(s) 5
Lsp1109I GCAGC 4 cut(s) 45, 54, 181, 496
LweI GCATC 1 cut(s) 238
MaeI CTAG 1 cut(s) 291
MaeIII GTNAC 1 cut(s) 448
MalI GATC 1 cut(s) 248
MboI GATC 1 cut(s) 246
MboII GAAGA 7 cut(s) 279, 397, 404, 473, 478, 521, 527
MluCI AATT 2 cut(s) 570, 724
MlyI GAGTC 2 cut(s) 113, 193
MnlI CCTC 3 cut(s) 130, 152, 162
MspR9I CCNGG 3 cut(s) 226, 697, 771
MvaI CCWGG 3 cut(s) 226, 697, 771
MvnI CGCG 5 cut(s) 25, 53, 55, 180, 298
MwoI GCNNNNNNNGC 5 cut(s) 19, 33, 39, 42, 326
NdeII GATC 1 cut(s) 246
NlaIII CATG 4 cut(s) 256, 261, 509, 659
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 1 cut(s) 448
NspI RCATGY 1 cut(s) 509
PauI GCGCGC 1 cut(s) 53
PfeI GAWTC 1 cut(s) 272
PkrI GCNGC 6 cut(s) 24, 35, 44, 52, 171, 511
PleI GAGTC 2 cut(s) 112, 193
PpsI GAGTC 2 cut(s) 112, 193
PshAI GACNNNNGTC 1 cut(s) 498
Psp6I CCWGG 3 cut(s) 224, 695, 769
PspFI CCCAGC 1 cut(s) 27
PspGI CCWGG 3 cut(s) 224, 695, 769
PspN4I GGNNCC 1 cut(s) 7
PstNI CAGNNNCTG 1 cut(s) 458
PteI GCGCGC 1 cut(s) 53
RsaI GTAC 4 cut(s) 77, 335, 359, 702
RsaNI GTAC 4 cut(s) 76, 334, 358, 701
SatI GCNGC 6 cut(s) 23, 34, 43, 51, 170, 510
Sau3AI GATC 1 cut(s) 246
ScaI AGTACT 1 cut(s) 359
SchI GAGTC 2 cut(s) 113, 193
ScrFI CCNGG 3 cut(s) 226, 697, 771
SetI ASST 7 cut(s) 47, 81, 92, 193, 487, 698, 772
SfaNI GCATC 1 cut(s) 238
Sse9I AATT 2 cut(s) 570, 724
SsiI CCGC 4 cut(s) 23, 51, 71, 178
SspMI CTAG 1 cut(s) 291
StyD4I CCNGG 3 cut(s) 224, 695, 769
TaaI ACNGT 1 cut(s) 497
TaqI TCGA 2 cut(s) 144, 275
TasI AATT 2 cut(s) 570, 724
TatI WGTACW 2 cut(s) 333, 357
TauI GCSGC 2 cut(s) 25, 53
TfiI GAWTC 1 cut(s) 272
TscAI CASTG 2 cut(s) 170, 336
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 4 cut(s) 33, 42, 169, 509
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 9 cut(s) 82, 173, 329, 352, 429, 495, 575, 582, 772
TspRI CASTG 2 cut(s) 170, 336
XagI CCTNNNNNAGG 1 cut(s) 774
XceI RCATGY 1 cut(s) 509
XmiI GTMKAC 1 cut(s) 502
XspI CTAG 1 cut(s) 291
ZrmI AGTACT 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.