Rorug03G0313100

Dymeclin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0008749
Physical Location & Seq
Forward (+)
33540790 .. 33541476
687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0313100.1

Sequence Viewer

Length: 582 bp
ATGTTAGAGAATGCTCTTGCTGCTCAAACACAAGTGGTAGACAAATTGCAAGAGATGGTGAGAGGCCTTTGCACTCGGCTAGACCAAAGTGGAAATAACAATGAACACACTAATGCACAACAATCTGCTACTGAGATTGGAAATAGAAAACGTAAAGAAAATCCAAGTGTTAGAAATACTGGTAGTCATATAGCACAGAGCAAACAAAAAGATGCAAGTATGAAAAGTTCTTATAATGAGACAGAAAATGGCAGCCCAATGCAGCAAAGTTTTAATGGAAAGAAGCAACTTTCTGGACAAGATAACCCAGAAAAGTTCCAAAAGACAGATTTGGGGAAACAAGTGCAGTTGTTAAGTTGGTTTGCTAAAGAGGAAGTAGTTGTTGCAAGTGCTAGCATTATATCAAAAGATCCACAAGTTGAGGTGCATCATGTGCCTCTTGGCCATGATTGTTGGAAAGTATCGGTGCATGAAGTTTTTCATGATATAGCCTTGTATCGCCCAACAAGCGAGTTTAGTAAACTTTATGCATCCACAGGAAGTATGATTGCATGGCCTATCAAGTACATCAAATTGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dymeclin

Protein Analysis

193

Amino Acids

21.63

Weight (kDa)

8.47

Isoelectric Point (pI)

36.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8039 PF26133 121 - 192 1.2e-09 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 234
AccI GTMKAC 1 cut(s) 39
AclWI GGATC 1 cut(s) 404
AcoI YGGCCR 1 cut(s) 442
AfaI GTAC 1 cut(s) 566
AgsI TTSAA 1 cut(s) 577
Alw26I GTCTC 1 cut(s) 233
AlwI GGATC 1 cut(s) 404
AoxI GGCC 3 cut(s) 64, 442, 554
ApeKI GCWGC 3 cut(s) 20, 252, 262
Asp700I GAANNNNTTC 1 cut(s) 477
AsuHPI GGTGA 1 cut(s) 70
AsuNHI GCTAGC 1 cut(s) 392
BalI TGGCCA 1 cut(s) 444
BbvI GCAGC 3 cut(s) 7, 264, 274
BccI CCATC 1 cut(s) 49
BcoDI GTCTC 1 cut(s) 233
BfaI CTAG 2 cut(s) 80, 393
BisI GCNGC 3 cut(s) 21, 253, 263
BlsI GCNGC 3 cut(s) 22, 254, 264
BmsI GCATC 3 cut(s) 202, 436, 539
BmtI GCTAGC 1 cut(s) 396
Bse1I ACTGG 1 cut(s) 184
BseGI GGATG 1 cut(s) 530
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 184
BseXI GCAGC 3 cut(s) 7, 264, 274
BsgI GTGCAG 1 cut(s) 365
BshFI GGCC 3 cut(s) 66, 444, 556
BsmAI GTCTC 1 cut(s) 233
BsmI GAATGC 1 cut(s) 16
BsnI GGCC 3 cut(s) 66, 444, 556
Bsp143I GATC 1 cut(s) 409
BspANI GGCC 3 cut(s) 66, 444, 556
BspCNI CTCAG 1 cut(s) 124
BspHI TCATGA 1 cut(s) 481
BspOI GCTAGC 1 cut(s) 396
BspPI GGATC 1 cut(s) 404
BsrI ACTGG 1 cut(s) 184
BssMI GATC 1 cut(s) 409
BstAPI GCANNNNNTGC 1 cut(s) 433
BstC8I GCNNGC 1 cut(s) 394
BstDEI CTNAG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 530
BstKTI GATC 1 cut(s) 412
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 1 cut(s) 409
BstMWI GCNNNNNNNGC 3 cut(s) 20, 433, 507
BstV1I GCAGC 3 cut(s) 7, 264, 274
BstX2I RGATCY 1 cut(s) 409
BstYI RGATCY 1 cut(s) 409
BsuRI GGCC 3 cut(s) 66, 444, 556
BtsCI GGATG 1 cut(s) 530
Cac8I GCNNGC 1 cut(s) 394
CciI TCATGA 1 cut(s) 481
Csp6I GTAC 1 cut(s) 565
CviAII CATG 5 cut(s) 431, 446, 470, 482, 552
CviJI RGCY 6 cut(s) 66, 79, 255, 444, 491, 556
CviKI_1 RGCY 6 cut(s) 66, 79, 255, 444, 491, 556
CviQI GTAC 1 cut(s) 565
DdeI CTNAG 1 cut(s) 132
DpnI GATC 1 cut(s) 411
DpnII GATC 1 cut(s) 409
EaeI YGGCCR 1 cut(s) 442
Eco147I AGGCCT 1 cut(s) 66
EcoT22I ATGCAT 1 cut(s) 532
FaeI CATG 5 cut(s) 434, 449, 473, 485, 555
FatI CATG 5 cut(s) 430, 445, 469, 481, 551
FblI GTMKAC 1 cut(s) 39
Fnu4HI GCNGC 3 cut(s) 21, 253, 263
FokI GGATG 1 cut(s) 517
Fsp4HI GCNGC 3 cut(s) 21, 253, 263
FspBI CTAG 2 cut(s) 80, 393
GluI GCNGC 3 cut(s) 21, 253, 263
HaeIII GGCC 3 cut(s) 66, 444, 556
Hin1II CATG 5 cut(s) 434, 449, 473, 485, 555
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 2 cut(s) 40, 521
Hpy188III TCNNGA 2 cut(s) 294, 482
Hpy8I GTNNAC 2 cut(s) 40, 521
HpyCH4IV ACGT 1 cut(s) 151
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 433, 507
HpyF3I CTNAG 1 cut(s) 132
HpySE526I ACGT 1 cut(s) 151
Hsp92II CATG 5 cut(s) 434, 449, 473, 485, 555
Kzo9I GATC 1 cut(s) 409
LpnPI CCDG 4 cut(s) 165, 279, 321, 522
Lsp1109I GCAGC 3 cut(s) 7, 264, 274
LweI GCATC 3 cut(s) 202, 436, 539
MaeI CTAG 2 cut(s) 80, 393
MaeII ACGT 1 cut(s) 151
MalI GATC 1 cut(s) 411
MboI GATC 1 cut(s) 409
MflI RGATCY 1 cut(s) 409
MlsI TGGCCA 1 cut(s) 444
MluCI AATT 3 cut(s) 44, 572, 577
MluNI TGGCCA 1 cut(s) 444
MmeI TCCRAC 1 cut(s) 434
MnlI CCTC 4 cut(s) 56, 364, 415, 447
Mox20I TGGCCA 1 cut(s) 444
Mph1103I ATGCAT 1 cut(s) 532
MroXI GAANNNNTTC 1 cut(s) 477
MscI TGGCCA 1 cut(s) 444
MseI TTAA 2 cut(s) 273, 353
MslI CAYNNNNRTG 1 cut(s) 111
Msp20I TGGCCA 1 cut(s) 444
Mva1269I GAATGC 1 cut(s) 16
MwoI GCNNNNNNNGC 3 cut(s) 20, 433, 507
NdeII GATC 1 cut(s) 409
NheI GCTAGC 1 cut(s) 392
NlaIII CATG 5 cut(s) 434, 449, 473, 485, 555
NmeAIII GCCGAG 1 cut(s) 55
NsiI ATGCAT 1 cut(s) 532
PagI TCATGA 1 cut(s) 481
PceI AGGCCT 1 cut(s) 66
PctI GAATGC 1 cut(s) 16
PdmI GAANNNNTTC 1 cut(s) 477
PkrI GCNGC 3 cut(s) 22, 254, 264
PsiI TTATAA 1 cut(s) 234
PsrI GAACNNNNNNTAC 2 cut(s) 211, 243
PsuI RGATCY 1 cut(s) 409
RsaI GTAC 1 cut(s) 566
RsaNI GTAC 1 cut(s) 565
RseI CAYNNNNRTG 1 cut(s) 111
SaqAI TTAA 2 cut(s) 273, 353
SatI GCNGC 3 cut(s) 21, 253, 263
Sau3AI GATC 1 cut(s) 409
SetI ASST 2 cut(s) 154, 426
SfaNI GCATC 3 cut(s) 202, 436, 539
SmiMI CAYNNNNRTG 1 cut(s) 111
Sse9I AATT 3 cut(s) 44, 572, 577
SseBI AGGCCT 1 cut(s) 66
SspMI CTAG 2 cut(s) 80, 393
StuI AGGCCT 1 cut(s) 66
TaiI ACGT 1 cut(s) 154
TasI AATT 3 cut(s) 44, 572, 577
TatI WGTACW 1 cut(s) 564
Tru1I TTAA 2 cut(s) 273, 353
Tru9I TTAA 2 cut(s) 273, 353
TseI GCWGC 3 cut(s) 20, 252, 262
TspDTI ATGAA 4 cut(s) 117, 236, 470, 486
XmiI GTMKAC 1 cut(s) 39
XmnI GAANNNNTTC 1 cut(s) 477
XspI CTAG 2 cut(s) 80, 393
Zsp2I ATGCAT 1 cut(s) 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.