Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0008749

Physical Location & Seq

Genomic Coordinates Forward (+)

3547515 .. 3555155

Gene Structure 7641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG018300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2043 bp

ATGGGAGCGGTGCCGTCGACGCCGCGCTGGGGGAGTAGCTCCGCGGCGCGTCCGCTGGAAACGGCGGAGTATCTGATCGGGACCTTCGTCGGCGACGAGTCGTTTCCTTTGTCCTCTGATTACTGGCAGAAATTGCTTGACCTCCCTCTCAGTCTCCAATGGCCTCCTGACCGCGTTCAACAAGCTTGCGAGGCTCTTGCACAAAACAACTACAAAACCAGGCATCTCGCAAAGCTTCTGATCCATCTGGCATGGTGTTTACAAGAAGCTATTTCAACTTCTGGTGGCCCTTCTCTTGTTTATGGGAAGGCTGTTAATGCAGTGTACATCTCATCTGTCTTTTTAAAGTACCTAATTGAAAATCCAAAAAGCGACAAGATTGAAGAGTTGTACTTATCTCTAGATGAAAGTGAGCCAATGCCAACTGATATTACAAGAGATCTAAACATCGAGGATTTTGTAATGTGTAGTGTGCTTACCTTTATTGGATCAATAGATGTAAGTCCTGGTACATACCTCCTTCATTTGGAACTGCTTAACTTCGTGCTGATTGCAATGTCAACTCAGCTTCTTTCTGGGCCATCCCCAGGACCAGAAGATGTGAACCCATTTCTTGATGCAGCAATGTCTCAGGAAAGCTCGTTGGTTATCTCGGTTGTTCGTAGACTGCTACTCAACTACATCACTGGACCTTCGATACCCCTGAATAGTGCATCTTATTCTATATTTTCTGAAGGAAGCCAGCCTGGTGTTATACAAAGAGTTAGTTCTGCAGCAGCAAATTTGATGTTATTACCATTCAACTTTCTCGTCAGTTCAAGTGGTGAAGGCTCAAAAAGTCTTTTGGCCGACTGCAGTCTCCATGTGCTACTTATTCTCACTCATTATCATAAATGTGTTGTGGGCAACGAGCCAATAACAGATTCAAGTACTGACACCACTACTTCAAATTCACTTTTGAAAGGGAGTAGATATTTTTCTGACAACCCTTACTGCAAGGCCTTGGAACATGCAACAGATGTTGAATTTGATCGTGTAGATACTGAGGGTAACGCACATAGTGGTCCAGTTTTGAGGTTACCTTTTGCTTCCCTGTTCGATACCCTTGGAATGTACTTGTCTGATGAGGCTGCTGCACTTTTGCTTTACTCTTTATTGCAAGGAAATGCTGACTTTCTGGAGTATGTCTTGGTGCGAACTGATTTGGATACGCTGTTGATGCCCATCCTGGAAGCGTTATATGATGCTCCAAAAAGGACATCTAATCAAATCTACATGTTGCTGATCATACTTCTCATACTTAGTCAGGATTCATCTTTTAATGCAAGCATTCACAAATTGATACTTCCTACTGTTCCCTGGTACAAAGAACGTCTCCTCCACCAGACATCTCTTGGTTCATTAATGGTCATTACGCTGATAAGGACAGTGCAGTATAACCTATCTAAGTTGCGGGATGTTTATCTCCATACAACTTGTCTAGCAACTTTGGCAAACATGGCACCTCATGTCCACCGTTTGAGTGCATATGCATCCCAGAGATTGGTCAGCCTATTTGATATGCTGTCTCGGAAGTATAACAAACTAGCAGAGGTGCGTAATAATCAGATGACATTAGCCAAAGGCAACTCAATAGAAGACGATACTTCAACGGAGATGCATATATATACCGACTTCTTGAGACTTGTCCTTGAAATATTAAATGCAATTTTGACATATGCTCTGCCACGGAATCCTGAGGTTATATATGCGATAATGCACAGGCAGGAAGTATTTCAGCCTTTCAGGAATCATCCACGTTTCAATGAGCTGCTTGAAAACATTTATACAGTATGCTCCATATTAACCTTCTCTCTCTGTCTCTCTCTCATTTTTTTTTTCTTTTCAACAAAACTTTGTCTTATTCTCATCAACGGGCAACCTTTGATGGCACTTGGCTGCTGTTTACCTTTTTTTGATAACTTGAAAACAATTCACGTCTTACAAAATAAATCACCTCTTGGTGCATTTGACCGGACTTATATTGTTTTTCTGGTGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dymeclin

Protein Analysis

680

Amino Acids

75.94

Weight (kDa)

5.41

Isoelectric Point (pI)

47.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dymeclin	PF09742	1 - 615	1e-165	Dyggve-Melchior-Clausen syndrome protein
Hid1	PF12722	380 - 537	4.5e-09	High-temperature-induced dauer-formation protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04200 AT1G04200 AT1G04200
fragaria_vesca	FvH4_4g01230 FvH4_4g01230 FvH4_4g01230
malus_domestica	MD13G1199900.v1.1 MD16G1199900.v1.1
prunus_persica	Prupe.1G021300_v2.0.a1
pyrus_communis	pycom13g17340 pycom16g16850
rosa_chinensis	RchiOBHm_Chr4g0387781
rosa_laevigata	RLG00000010096
rosa_multiflora	Rmu_sc0008916.1_g000003 Rmu_sc0013958.1_g000003
rosa_roxburghii	Rroxscaffold_5G00334400
rosa_rugosa	Rorug03G0313100 Rorug03G0313200 Rorug03G0313300
rosa_samantha	Rh4AG018300 Rh4CG019500 Rh4DG014100
rosa_wichuraiana	Rw4G001200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	10, 1501
AccB7I	CCANNNNNTGG	1 cut(s)	1543
AccBSI	CCGCTC	1 cut(s)	8
AccI	GTMKAC	2 cut(s)	17, 664
AccII	CGCG	4 cut(s)	25, 44, 49, 174
AciI	CCGC	8 cut(s)	8, 23, 42, 44, 53, 65, 172, 1453
AclWI	GGATC	2 cut(s)	235, 496
AcoI	YGGCCR	1 cut(s)	846
AcsI	RAATTY	3 cut(s)	781, 949, 1025
AcuI	CTGAAG	1 cut(s)	753
AcyI	GRCGYC	1 cut(s)	20
AdeI	CACNNNGTG	1 cut(s)	1061
AfaI	GTAC	7 cut(s)	326, 350, 392, 511, 931, 1115, 1364
AfiI	CCNNNNNNNGG	4 cut(s)	29, 526, 587, 1543
AflIII	ACRYGT	1 cut(s)	1275
AjiI	CACGTC	1 cut(s)	1978
AjnI	CCWGG	6 cut(s)	218, 505, 586, 745, 1227, 1358
AjuI	GAANNNNNNNTTGG	2 cut(s)	907, 939
AloI	GAACNNNNNNTCC	2 cut(s)	1362, 1394
AluBI	AGCT	7 cut(s)	39, 185, 235, 269, 568, 639, 1810
AluI	AGCT	7 cut(s)	39, 185, 235, 269, 568, 639, 1810
Alw26I	GTCTC	7 cut(s)	158, 633, 863, 1379, 1572, 1675, 1865
AlwI	GGATC	2 cut(s)	235, 496
AoxI	GGCC	5 cut(s)	161, 286, 578, 846, 999
ApeKI	GCWGC	7 cut(s)	620, 773, 776, 1130, 1133, 1810, 1938
ApoI	RAATTY	3 cut(s)	781, 949, 1025
AseI	ATTAAT	1 cut(s)	1403
Asp700I	GAANNNNTTC	1 cut(s)	1773
AspLEI	GCGC	2 cut(s)	27, 49
AspS9I	GGNCC	6 cut(s)	81, 287, 578, 590, 689, 1064
AsuHPI	GGTGA	2 cut(s)	836, 1986
AvaII	GGWCC	4 cut(s)	81, 590, 689, 1064
AxyI	CCTNAGG	1 cut(s)	1737
BanI	GGYRCC	2 cut(s)	10, 1501
BbsI	GAAGAC	1 cut(s)	1644
BbvI	GCAGC	7 cut(s)	632, 785, 788, 1117, 1120, 1797, 1925
BccI	CCATC	4 cut(s)	252, 589, 1232, 1921
BceAI	ACGGC	1 cut(s)	78
BcgI	CGANNNNNNTGC	2 cut(s)	179, 213
BciT130I	CCWGG	6 cut(s)	220, 507, 588, 747, 1229, 1360
BciVI	GTATCC	1 cut(s)	1201
BclI	TGATCA	1 cut(s)	1284
BcoDI	GTCTC	7 cut(s)	158, 633, 863, 1379, 1572, 1675, 1865
BfaI	CTAG	3 cut(s)	401, 1481, 1586
BfmI	CTRYAG	2 cut(s)	771, 853
BfuI	GTATCC	1 cut(s)	1201
BglII	AGATCT	1 cut(s)	439
BisI	GCNGC	9 cut(s)	23, 45, 621, 774, 777, 1131, 1134, 1811, 1939
BlsI	GCNGC	9 cut(s)	24, 46, 622, 775, 778, 1132, 1135, 1812, 1940
BmcAI	AGTACT	1 cut(s)	931
Bme1390I	CCNGG	6 cut(s)	220, 507, 588, 747, 1229, 1360
Bme18I	GGWCC	4 cut(s)	81, 590, 689, 1064
BmgBI	CACGTC	1 cut(s)	1978
BmgT120I	GGNCC	6 cut(s)	81, 287, 578, 590, 689, 1064
BmiI	GGNNCC	3 cut(s)	12, 82, 1503
BmrFI	CCNGG	6 cut(s)	220, 507, 588, 747, 1229, 1360
BmsI	GCATC	7 cut(s)	232, 607, 722, 1209, 1234, 1541, 1647
BoxI	GACNNNNGTC	2 cut(s)	86, 855
BpiI	GAAGAC	1 cut(s)	1644
BpmI	CTGGAG	1 cut(s)	1199
BpuEI	CTTGAG	1 cut(s)	1699
BsaBI	GATNNNNATC	2 cut(s)	1223, 1461
BsaHI	GRCGYC	1 cut(s)	20
BsaJI	CCNNGG	6 cut(s)	42, 586, 1002, 1105, 1358, 1727
BsaWI	WCCGGW	1 cut(s)	2013
BsaXI	ACNNNNNCTCC	2 cut(s)	1362, 1392
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 526, 587, 1543
Bse1I	ACTGG	3 cut(s)	128, 691, 1067
Bse21I	CCTNAGG	1 cut(s)	1737
Bse3DI	GCAATG	2 cut(s)	561, 630
Bse8I	GATNNNNATC	2 cut(s)	1223, 1461
BseBI	CCWGG	6 cut(s)	220, 507, 588, 747, 1229, 1360
BseDI	CCNNGG	6 cut(s)	42, 586, 1002, 1105, 1358, 1727
BseGI	GGATG	5 cut(s)	581, 1224, 1462, 1532, 1792
BseJI	GATNNNNATC	2 cut(s)	1223, 1461
BseLI	CCNNNNNNNGG	4 cut(s)	29, 526, 587, 1543
BseMI	GCAATG	2 cut(s)	561, 630
BseMII	CTCAG	5 cut(s)	163, 578, 644, 1035, 1728
BseNI	ACTGG	3 cut(s)	128, 691, 1067
BseRI	GAGGAG	1 cut(s)	1367
BseXI	GCAGC	7 cut(s)	632, 785, 788, 1117, 1120, 1797, 1925
BseYI	CCCAGC	1 cut(s)	27
BsgI	GTGCAG	2 cut(s)	1119, 1451
Bsh1236I	CGCG	4 cut(s)	25, 44, 49, 174
BshFI	GGCC	5 cut(s)	163, 288, 580, 848, 1001
BshNI	GGYRCC	2 cut(s)	10, 1501
BsiSI	CCGG	1 cut(s)	2014
BslFI	GGGAC	1 cut(s)	94
BslI	CCNNNNNNNGG	4 cut(s)	29, 526, 587, 1543
BsmAI	GTCTC	7 cut(s)	158, 633, 863, 1379, 1572, 1675, 1865
BsmBI	CGTCTC	1 cut(s)	1379
BsmFI	GGGAC	1 cut(s)	94
BsmI	GAATGC	1 cut(s)	1329
BsnI	GGCC	5 cut(s)	163, 288, 580, 848, 1001
Bsp1407I	TGTACA	1 cut(s)	324
Bsp143I	GATC	6 cut(s)	75, 240, 439, 488, 1030, 1284
BspACI	CCGC	8 cut(s)	8, 23, 42, 44, 53, 65, 172, 1453
BspANI	GGCC	5 cut(s)	163, 288, 580, 848, 1001
BspCNI	CTCAG	5 cut(s)	162, 577, 643, 1036, 1729
BspFNI	CGCG	4 cut(s)	25, 44, 49, 174
BspLI	GGNNCC	3 cut(s)	12, 82, 1503
BspMAI	CTGCAG	2 cut(s)	775, 857
BspPI	GGATC	2 cut(s)	235, 496
BspT107I	GGYRCC	2 cut(s)	10, 1501
BsrBI	CCGCTC	1 cut(s)	8
BsrDI	GCAATG	2 cut(s)	561, 630
BsrGI	TGTACA	1 cut(s)	324
BsrI	ACTGG	3 cut(s)	128, 691, 1067
BssECI	CCNNGG	6 cut(s)	42, 586, 1002, 1105, 1358, 1727
BssMI	GATC	6 cut(s)	75, 240, 439, 488, 1030, 1284
BssNI	GRCGYC	1 cut(s)	20
BssT1I	CCWWGG	2 cut(s)	1002, 1105
Bst2UI	CCWGG	6 cut(s)	220, 507, 588, 747, 1229, 1360
Bst4CI	ACNGT	4 cut(s)	1354, 1429, 1517, 1831
Bst6I	CTCTTC	1 cut(s)	378
BstACI	GRCGYC	1 cut(s)	20
BstAPI	GCANNNNNTGC	1 cut(s)	133
BstAUI	TGTACA	1 cut(s)	324
BstC8I	GCNNGC	3 cut(s)	187, 743, 1327
BstDEI	CTNAG	7 cut(s)	149, 564, 630, 1044, 1301, 1446, 1737
BstDSI	CCRYGG	2 cut(s)	42, 1727
BstEII	GGTNACC	1 cut(s)	1077
BstF5I	GGATG	5 cut(s)	581, 1224, 1462, 1532, 1792
BstFNI	CGCG	4 cut(s)	25, 44, 49, 174
BstHHI	GCGC	2 cut(s)	27, 49
BstKTI	GATC	6 cut(s)	78, 243, 442, 491, 1033, 1287
BstMAI	GTCTC	7 cut(s)	158, 633, 863, 1379, 1572, 1675, 1865
BstMBI	GATC	6 cut(s)	75, 240, 439, 488, 1030, 1284
BstMWI	GCNNNNNNNGC	7 cut(s)	19, 133, 191, 317, 1219, 1490, 1499
BstNI	CCWGG	6 cut(s)	220, 507, 588, 747, 1229, 1360
BstNSI	RCATGY	2 cut(s)	1013, 1279
BstPAI	GACNNNNGTC	2 cut(s)	86, 855
BstPI	GGTNACC	1 cut(s)	1077
BstSCI	CCNGG	6 cut(s)	218, 505, 586, 745, 1227, 1358
BstSFI	CTRYAG	2 cut(s)	771, 853
BstUI	CGCG	4 cut(s)	25, 44, 49, 174
BstV1I	GCAGC	7 cut(s)	632, 785, 788, 1117, 1120, 1797, 1925
BstV2I	GAAGAC	1 cut(s)	1644
BstX2I	RGATCY	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	439
Bsu36I	CCTNAGG	1 cut(s)	1737
BsuI	GTATCC	1 cut(s)	1201
BsuRI	GGCC	5 cut(s)	163, 288, 580, 848, 1001
BtgI	CCRYGG	2 cut(s)	42, 1727
BtrI	CACGTC	1 cut(s)	1978
BtsCI	GGATG	5 cut(s)	581, 1224, 1462, 1532, 1792
BtsI	GCAGTG	1 cut(s)	327
BtsIMutI	CAGTG	3 cut(s)	327, 684, 1434
Cac8I	GCNNGC	3 cut(s)	187, 743, 1327
CfoI	GCGC	2 cut(s)	27, 49
Cfr13I	GGNCC	6 cut(s)	81, 287, 578, 590, 689, 1064
Cfr42I	CCGCGG	1 cut(s)	45
CseI	GACGC	2 cut(s)	28, 38
Csp6I	GTAC	7 cut(s)	325, 349, 391, 510, 930, 1114, 1363
CviAII	CATG	6 cut(s)	252, 863, 1010, 1276, 1498, 1508
CviQI	GTAC	7 cut(s)	325, 349, 391, 510, 930, 1114, 1363
DdeI	CTNAG	7 cut(s)	149, 564, 630, 1044, 1301, 1446, 1737
DpnI	GATC	6 cut(s)	77, 242, 441, 490, 1032, 1286
DpnII	GATC	6 cut(s)	75, 240, 439, 488, 1030, 1284
DraI	TTTAAA	1 cut(s)	345
DraIII	CACNNNGTG	1 cut(s)	1061
EaeI	YGGCCR	1 cut(s)	846
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
EciI	GGCGGA	1 cut(s)	80
Eco130I	CCWWGG	2 cut(s)	1002, 1105
Eco147I	AGGCCT	1 cut(s)	1001
Eco47I	GGWCC	4 cut(s)	81, 590, 689, 1064
Eco57I	CTGAAG	1 cut(s)	753
Eco81I	CCTNAGG	1 cut(s)	1737
Eco91I	GGTNACC	1 cut(s)	1077
EcoO109I	RGGNCCY	1 cut(s)	81
EcoO65I	GGTNACC	1 cut(s)	1077
EcoRII	CCWGG	6 cut(s)	218, 505, 586, 745, 1227, 1358
EcoT14I	CCWWGG	2 cut(s)	1002, 1105
EcoT22I	ATGCAT	2 cut(s)	1534, 1662
ErhI	CCWWGG	2 cut(s)	1002, 1105
Esp3I	CGTCTC	1 cut(s)	1379
FaeI	CATG	6 cut(s)	255, 866, 1013, 1279, 1501, 1511
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	6 cut(s)	251, 862, 1009, 1275, 1497, 1507
FauI	CCCGC	1 cut(s)	1446
FauNDI	CATATG	2 cut(s)	1528, 1717
FbaI	TGATCA	1 cut(s)	1284
FblI	GTMKAC	2 cut(s)	17, 664
Fnu4HI	GCNGC	9 cut(s)	23, 45, 621, 774, 777, 1131, 1134, 1811, 1939
FokI	GGATG	5 cut(s)	568, 1211, 1469, 1519, 1779
Fsp4HI	GCNGC	9 cut(s)	23, 45, 621, 774, 777, 1131, 1134, 1811, 1939
FspBI	CTAG	3 cut(s)	401, 1481, 1586
GlaI	GCGC	2 cut(s)	26, 48
GluI	GCNGC	9 cut(s)	23, 45, 621, 774, 777, 1131, 1134, 1811, 1939
GsaI	CCCAGC	1 cut(s)	31
GsuI	CTGGAG	1 cut(s)	1199
HaeIII	GGCC	5 cut(s)	163, 288, 580, 848, 1001
HapII	CCGG	1 cut(s)	2014
HgaI	GACGC	2 cut(s)	28, 38
HhaI	GCGC	2 cut(s)	27, 49
Hin1I	GRCGYC	1 cut(s)	20
Hin1II	CATG	6 cut(s)	255, 866, 1013, 1279, 1501, 1511
Hin6I	GCGC	2 cut(s)	25, 47
HinP1I	GCGC	2 cut(s)	25, 47
HincII	GTYRAC	2 cut(s)	18, 561
HindII	GTYRAC	2 cut(s)	18, 561
HindIII	AAGCTT	2 cut(s)	183, 233
HinfI	GANTC	5 cut(s)	98, 923, 1310, 1732, 1789
HpaII	CCGG	1 cut(s)	2014
HphI	GGTGA	2 cut(s)	836, 1986
Hpy166II	GTNNAC	8 cut(s)	18, 260, 325, 561, 604, 665, 1513, 1946
Hpy188I	TCNGA	8 cut(s)	75, 118, 240, 733, 982, 1123, 1572, 1608
Hpy8I	GTNNAC	8 cut(s)	18, 260, 325, 561, 604, 665, 1513, 1946
Hpy99I	CGWCG	4 cut(s)	19, 22, 92, 98
HpyAV	CCTTC	8 cut(s)	94, 300, 301, 530, 702, 728, 821, 1858
HpyCH4III	ACNGT	4 cut(s)	1354, 1429, 1517, 1831
HpyCH4IV	ACGT	3 cut(s)	1372, 1798, 1977
HpyF10VI	GCNNNNNNNGC	7 cut(s)	19, 133, 191, 317, 1219, 1490, 1499
HpyF3I	CTNAG	7 cut(s)	149, 564, 630, 1044, 1301, 1446, 1737
HpySE526I	ACGT	3 cut(s)	1372, 1798, 1977
Hsp92I	GRCGYC	1 cut(s)	20
Hsp92II	CATG	6 cut(s)	255, 866, 1013, 1279, 1501, 1511
HspAI	GCGC	2 cut(s)	25, 47
Ksp22I	TGATCA	1 cut(s)	1284
KspI	CCGCGG	1 cut(s)	45
Kzo9I	GATC	6 cut(s)	75, 240, 439, 488, 1030, 1284
LmnI	GCTCC	4 cut(s)	5, 44, 1252, 1841
Lsp1109I	GCAGC	7 cut(s)	632, 785, 788, 1117, 1120, 1797, 1925
LweI	GCATC	7 cut(s)	232, 607, 722, 1209, 1234, 1541, 1647
MaeI	CTAG	3 cut(s)	401, 1481, 1586
MaeII	ACGT	3 cut(s)	1372, 1798, 1977
MaeIII	GTNAC	2 cut(s)	1049, 1077
MalI	GATC	6 cut(s)	77, 242, 441, 490, 1032, 1286
MbiI	CCGCTC	1 cut(s)	8
MboI	GATC	6 cut(s)	75, 240, 439, 488, 1030, 1284
MboII	GAAGA	3 cut(s)	395, 608, 1649
MflI	RGATCY	1 cut(s)	439
MluCI	AATT	8 cut(s)	131, 354, 781, 949, 1025, 1337, 1707, 1971
MlyI	GAGTC	1 cut(s)	107
Mph1103I	ATGCAT	2 cut(s)	1534, 1662
MroXI	GAANNNNTTC	1 cut(s)	1773
MseI	TTAA	7 cut(s)	315, 344, 537, 1320, 1403, 1700, 1844
MslI	CAYNNNNRTG	1 cut(s)	894
MspA1I	CMGCKG	2 cut(s)	44, 55
MspI	CCGG	1 cut(s)	2014
MspR9I	CCNGG	6 cut(s)	220, 507, 588, 747, 1229, 1360
Mva1269I	GAATGC	1 cut(s)	1329
MvaI	CCWGG	6 cut(s)	220, 507, 588, 747, 1229, 1360
MvnI	CGCG	4 cut(s)	25, 44, 49, 174
MwoI	GCNNNNNNNGC	7 cut(s)	19, 133, 191, 317, 1219, 1490, 1499
NdeI	CATATG	2 cut(s)	1528, 1717
NdeII	GATC	6 cut(s)	75, 240, 439, 488, 1030, 1284
NlaIII	CATG	6 cut(s)	255, 866, 1013, 1279, 1501, 1511
NlaIV	GGNNCC	3 cut(s)	12, 82, 1503
NsiI	ATGCAT	2 cut(s)	1534, 1662
NspI	RCATGY	2 cut(s)	1013, 1279
PceI	AGGCCT	1 cut(s)	1001
PciI	ACATGT	1 cut(s)	1275
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 93
PctI	GAATGC	1 cut(s)	1329
PdmI	GAANNNNTTC	1 cut(s)	1773
PfeI	GAWTC	4 cut(s)	923, 1310, 1732, 1789
PflMI	CCANNNNNTGG	1 cut(s)	1543
PfoI	TCCNGGA	1 cut(s)	1227
PkrI	GCNGC	9 cut(s)	24, 46, 622, 775, 778, 1132, 1135, 1812, 1940
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PpuMI	RGGWCCY	1 cut(s)	81
PscI	ACATGT	1 cut(s)	1275
PshAI	GACNNNNGTC	2 cut(s)	86, 855
PshBI	ATTAAT	1 cut(s)	1403
Psp5II	RGGWCCY	1 cut(s)	81
Psp6I	CCWGG	6 cut(s)	218, 505, 586, 745, 1227, 1358
PspEI	GGTNACC	1 cut(s)	1077
PspFI	CCCAGC	1 cut(s)	27
PspGI	CCWGG	6 cut(s)	218, 505, 586, 745, 1227, 1358
PspN4I	GGNNCC	3 cut(s)	12, 82, 1503
PspPI	GGNCC	6 cut(s)	81, 287, 578, 590, 689, 1064
PspPPI	RGGWCCY	1 cut(s)	81
PstI	CTGCAG	2 cut(s)	775, 857
PsuI	RGATCY	1 cut(s)	439
RsaI	GTAC	7 cut(s)	326, 350, 392, 511, 931, 1115, 1364
RsaNI	GTAC	7 cut(s)	325, 349, 391, 510, 930, 1114, 1363
RseI	CAYNNNNRTG	1 cut(s)	894
SacII	CCGCGG	1 cut(s)	45
SalI	GTCGAC	1 cut(s)	16
SaqAI	TTAA	7 cut(s)	315, 344, 537, 1320, 1403, 1700, 1844
SatI	GCNGC	9 cut(s)	23, 45, 621, 774, 777, 1131, 1134, 1811, 1939
Sau3AI	GATC	6 cut(s)	75, 240, 439, 488, 1030, 1284
Sau96I	GGNCC	6 cut(s)	81, 287, 578, 590, 689, 1064
ScaI	AGTACT	1 cut(s)	931
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	6 cut(s)	220, 507, 588, 747, 1229, 1360
SfaNI	GCATC	7 cut(s)	232, 607, 722, 1209, 1234, 1541, 1647
SfcI	CTRYAG	2 cut(s)	771, 853
Sfr303I	CCGCGG	1 cut(s)	45
SgrBI	CCGCGG	1 cut(s)	45
SgrDI	CGTCGACG	1 cut(s)	16
SinI	GGWCC	4 cut(s)	81, 590, 689, 1064
SmiMI	CAYNNNNRTG	1 cut(s)	894
SmlI	CTYRAG	1 cut(s)	1678
SmoI	CTYRAG	1 cut(s)	1678
Sse9I	AATT	8 cut(s)	131, 354, 781, 949, 1025, 1337, 1707, 1971
SseBI	AGGCCT	1 cut(s)	1001
SsiI	CCGC	8 cut(s)	8, 23, 42, 44, 53, 65, 172, 1453
SspI	AATATT	1 cut(s)	1698
SspMI	CTAG	3 cut(s)	401, 1481, 1586
StuI	AGGCCT	1 cut(s)	1001
StyD4I	CCNGG	6 cut(s)	218, 505, 586, 745, 1227, 1358
StyI	CCWWGG	2 cut(s)	1002, 1105
TaaI	ACNGT	4 cut(s)	1354, 1429, 1517, 1831
TaiI	ACGT	3 cut(s)	1375, 1801, 1980
TaqI	TCGA	4 cut(s)	17, 450, 695, 1098
TasI	AATT	8 cut(s)	131, 354, 781, 949, 1025, 1337, 1707, 1971
TatI	WGTACW	4 cut(s)	324, 390, 929, 1113
TauI	GCSGC	2 cut(s)	25, 47
TfiI	GAWTC	4 cut(s)	923, 1310, 1732, 1789
Tru1I	TTAA	7 cut(s)	315, 344, 537, 1320, 1403, 1700, 1844
Tru9I	TTAA	7 cut(s)	315, 344, 537, 1320, 1403, 1700, 1844
TscAI	CASTG	3 cut(s)	327, 691, 1434
TseI	GCWGC	7 cut(s)	620, 773, 776, 1130, 1133, 1810, 1938
TspDTI	ATGAA	4 cut(s)	420, 512, 1302, 1389
TspGWI	ACGGA	2 cut(s)	1667, 1744
TspRI	CASTG	3 cut(s)	327, 691, 1434
Van91I	CCANNNNNTGG	1 cut(s)	1543
VpaK11BI	GGWCC	4 cut(s)	81, 590, 689, 1064
VspI	ATTAAT	1 cut(s)	1403
XapI	RAATTY	3 cut(s)	781, 949, 1025
XbaI	TCTAGA	1 cut(s)	400
XceI	RCATGY	2 cut(s)	1013, 1279
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1391
XmiI	GTMKAC	2 cut(s)	17, 664
XmnI	GAANNNNTTC	1 cut(s)	1773
XspI	CTAG	3 cut(s)	401, 1481, 1586
ZrmI	AGTACT	1 cut(s)	931
Zsp2I	ATGCAT	2 cut(s)	1534, 1662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.