Rorug03G0313200

Dymeclin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0008749
Physical Location & Seq
Reverse (-)
33546551 .. 33558997
12447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0313200.1

Sequence Viewer

Length: 1674 bp
ATGTCTTGTGTGCGGCGAGCGGTAGCTAAGGTGGTGAAGGAGAAGAGGCATATAGTTAACCGTTTTCTCTCTCCTTCTTCAACTGCCGGAACCGGAACCATGACTACTGCTCCGTTCTTCTCCGGCGGTACTGGCGGTTACAAGTTTTCTGATCAGCATTGGAGGATGGACCCTCGGCTCTGGTTTTTTCTATCTGGAAATGCAGCAATTATTCTTGCCATAAATTCCAACACCATCTTGGCAAAAGATGCATCACTTGATAATGAGGCACAGGGGATGGAAGGGGATGACACAATGCAGTTACGCAGAGTTGAGGATGCTTCTGTCAAATCTAACATACATACCTCTAAGTGGAGAGTTTTTACAGATAAAGGGAGGGAATTCTTCCTTCAGGGAAAAGTGGAGGAAGCTGAAAAGCTCTTTCTCGCGGCTTTACAGGAAGCTAAAGAAGGTTTTGGGAAGAGGGATCCGCATGTTGCATCTGCAAGCAACAATTTAGCAGAGCTCTATAGAGTTAATAAGCTTTATCATAAGGCAGAGCCATTGTATTTGGAGGCCATCAGCATACTGGAGGAGTCATTTGGTCCTGAAGATATACGAGTTGGGTCTGCCTTTCATAATCTGGGTCAGTTCTATATTGTACAGCGGAAGCTGGATGAAGCCCGTGTTTGCTATGAGCGTGCTTTGAAGATTAAACGCCGTGTTCTGGGTCTTAACCATACGGGTTATGCAGATACTATGTATCATCTTGGAACGGTGCTACACCTCCAAGGAAAAGAGAAGGACTCTGAGGCCCTCGTTCAAGATTCCATTCGAATACTTGAGGATGGTGGTCAAGGAGAGTCGGTTATGTGCTTAAAGAGAATGCGATATCTTGCTCAGATATATCTGAAATCCAATCGATTTGAGGAGGCCGAGAAGGTACAAAGAAAGATCCTGCATATAATGGAAATAACAAAGGGATGGAATGTATTGGATACAGCAATAACAGCTGAAGGGCTCGCACTGATCCTCCAATCCACTGGAAGCTTAAAGGAAGCTGAAGAGCTTCTTGAAAGATGTCTTGATGCTCGAAAAGCCTTACTTCCTCAAGATCACATTCAGATTGGTGTGAACTTGCTTCATATTGCTAGAGTGGCAATGCTCAATTCCGACCAACTGAAGAATATTGACTATCCAAAAGCAATTTCTGAGCTTGATAAGGCCAAAGAAGTTTTACATGAGTCCATGAGGATAGCACAGTGTTCCTTGGATAAATTCATGAAGCAAAATAAGAAGATTCGTAGTAATGGAGCACCAGGTGAAATGGGAAAGAATGGTCAGGTGCCATTAGTCATATTGTTGCAAGCTTCTGATGCTCTTGGCCTTTTGGAGATCAAAAAGCAACAATTAAAAGGGTCAAAGCAGTCTGAGCATGCACCTAATATCGAAGCTGAGAATGCACTATTTAAATGTATATCTGCTTACAGAGAGTTCGTAACTGAGAGATCAATCCCTGAGTCTCCTGAAACAAAGGCCGAGTATCTTAAATGTTTGAAGCATCTTTTGAGCTTGAATAGTGATAGCACTACAGAAAGAACACAACAATCTACTGGAGTCAATTTGCAAGATCTGAGAGACGAAATTAAGCGTCTTGAAGTTGAACTTTCTCCTCATAGGAAACGCAAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dymeclin

Protein Analysis

557

Amino Acids

62.82

Weight (kDa)

8.78

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_12 PF13424 129 - 192 1.9e-08 Tetratricopeptide repeat
TPR_NPHP3 PF24885 152 - 235 1.1e-11 Nephrocystin-3 TPR domain
TPR_12 PF13424 159 - 210 1.7e-07 Tetratricopeptide repeat
TPR_NPHP3 PF24885 201 - 317 1.4e-08 Nephrocystin-3 TPR domain
TPR_12 PF13424 202 - 275 1.5e-14 Tetratricopeptide repeat
TPR_10 PF13374 203 - 240 4.2e-08 Tetratricopeptide repeat
TPR_MalT PF17874 247 - 375 3e-06 MalT-like TPR region
TPR_12 PF13424 291 - 359 7.7e-09 Tetratricopeptide repeat
TPR_10 PF13374 327 - 367 1.2e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1324
AccBSI CCGCTC 1 cut(s) 20
AccII CGCG 1 cut(s) 428
AciI CCGC 7 cut(s) 13, 20, 126, 135, 428, 470, 646
AclWI GGATC 4 cut(s) 461, 474, 928, 1003
AcsI RAATTY 4 cut(s) 223, 380, 1256, 1668
AcuI CTGAAG 5 cut(s) 374, 609, 1014, 1062, 1181
AdeI CACNNNGTG 1 cut(s) 1301
AfaI GTAC 3 cut(s) 130, 642, 924
AfiI CCNNNNNNNGG 2 cut(s) 351, 706
AgsI TTSAA 8 cut(s) 81, 688, 803, 1055, 1537, 1555, 1637, 1643
AjnI CCWGG 1 cut(s) 1297
AjuI GAANNNNNNNTTGG 2 cut(s) 1171, 1203
Alw21I GWGCWC 2 cut(s) 507, 1297
Alw26I GTCTC 2 cut(s) 1506, 1611
AlwI GGATC 4 cut(s) 461, 474, 928, 1003
AoxI GGCC 6 cut(s) 555, 792, 912, 1203, 1363, 1515
ApeKI GCWGC 1 cut(s) 203
ApoI RAATTY 4 cut(s) 223, 380, 1256, 1668
Asp700I GAANNNNTTC 1 cut(s) 1047
AspS9I GGNCC 3 cut(s) 169, 584, 793
AsuHPI GGTGA 2 cut(s) 46, 1313
AsuII TTCGAA 1 cut(s) 814
AvaII GGWCC 2 cut(s) 169, 584
BamHI GGATCC 1 cut(s) 466
BanI GGYRCC 1 cut(s) 1324
BanII GRGCYC 2 cut(s) 507, 1002
Bbv12I GWGCWC 2 cut(s) 507, 1297
BbvI GCAGC 1 cut(s) 215
BccI CCATC 6 cut(s) 160, 242, 271, 566, 821, 957
BceAI ACGGC 1 cut(s) 684
BciT130I CCWGG 1 cut(s) 1299
BciVI GTATCC 1 cut(s) 970
BclI TGATCA 1 cut(s) 151
BcoDI GTCTC 2 cut(s) 1506, 1611
BfaI CTAG 1 cut(s) 1131
BfmI CTRYAG 2 cut(s) 508, 1569
BfuI GTATCC 1 cut(s) 970
BglII AGATCT 1 cut(s) 1609
BisI GCNGC 3 cut(s) 14, 204, 429
BlsI GCNGC 3 cut(s) 15, 205, 430
Bme1390I CCNGG 1 cut(s) 1299
Bme18I GGWCC 2 cut(s) 169, 584
BmgT120I GGNCC 3 cut(s) 169, 584, 793
BmiI GGNNCC 5 cut(s) 91, 97, 171, 468, 1326
BmrFI CCNGG 1 cut(s) 1299
BmsI GCATC 7 cut(s) 238, 260, 307, 488, 1057, 1345, 1549
BplI GAGNNNNNCTC 2 cut(s) 770, 802
BpmI CTGGAG 2 cut(s) 590, 1614
Bpu10I CCTNAGC 1 cut(s) 27
Bpu14I TTCGAA 1 cut(s) 814
BpuEI CTTGAG 2 cut(s) 842, 1074
Bsa29I ATCGAT 1 cut(s) 901
BsaJI CCNNGG 3 cut(s) 173, 769, 1248
BsaWI WCCGGW 1 cut(s) 92
BsaXI ACNNNNNCTCC 6 cut(s) 94, 124, 831, 861, 996, 1026
Bsc4I CCNNNNNNNGG 2 cut(s) 351, 706
Bse1I ACTGG 4 cut(s) 136, 573, 1027, 1597
Bse3DI GCAATG 1 cut(s) 1146
BseBI CCWGG 1 cut(s) 1299
BseCI ATCGAT 1 cut(s) 901
BseDI CCNNGG 3 cut(s) 173, 769, 1248
BseGI GGATG 7 cut(s) 171, 282, 292, 322, 661, 832, 968
BseLI CCNNNNNNNGG 2 cut(s) 351, 706
BseMI GCAATG 1 cut(s) 1146
BseMII CTCAG 8 cut(s) 780, 893, 1182, 1401, 1425, 1473, 1488, 1604
BseNI ACTGG 4 cut(s) 136, 573, 1027, 1597
BseRI GAGGAG 3 cut(s) 587, 923, 1641
BseXI GCAGC 1 cut(s) 215
Bsh1236I CGCG 1 cut(s) 428
BshFI GGCC 6 cut(s) 557, 794, 914, 1205, 1365, 1517
BshNI GGYRCC 1 cut(s) 1324
BshVI ATCGAT 1 cut(s) 901
BsiHKAI GWGCWC 2 cut(s) 507, 1297
BsiSI CCGG 3 cut(s) 87, 93, 123
BslI CCNNNNNNNGG 2 cut(s) 351, 706
BsmAI GTCTC 2 cut(s) 1506, 1611
BsmBI CGTCTC 1 cut(s) 1611
BsmI GAATGC 2 cut(s) 870, 1444
BsnI GGCC 6 cut(s) 557, 794, 914, 1205, 1365, 1517
Bsp119I TTCGAA 1 cut(s) 814
Bsp1286I GDGCHC 3 cut(s) 507, 1002, 1297
Bsp1407I TGTACA 1 cut(s) 640
Bsp143I GATC 8 cut(s) 151, 466, 933, 1008, 1093, 1374, 1487, 1609
BspACI CCGC 7 cut(s) 13, 20, 126, 135, 428, 470, 646
BspANI GGCC 6 cut(s) 557, 794, 914, 1205, 1365, 1517
BspCNI CTCAG 8 cut(s) 781, 892, 1183, 1402, 1426, 1474, 1489, 1605
BspDI ATCGAT 1 cut(s) 901
BspFNI CGCG 1 cut(s) 428
BspHI TCATGA 1 cut(s) 1260
BspLI GGNNCC 5 cut(s) 91, 97, 171, 468, 1326
BspPI GGATC 4 cut(s) 461, 474, 928, 1003
BspQI GCTCTTC 1 cut(s) 1038
BspT104I TTCGAA 1 cut(s) 814
BspT107I GGYRCC 1 cut(s) 1324
BsrBI CCGCTC 1 cut(s) 20
BsrDI GCAATG 1 cut(s) 1146
BsrGI TGTACA 1 cut(s) 640
BsrI ACTGG 4 cut(s) 136, 573, 1027, 1597
BssECI CCNNGG 3 cut(s) 173, 769, 1248
BssMI GATC 8 cut(s) 151, 466, 933, 1008, 1093, 1374, 1487, 1609
BssT1I CCWWGG 2 cut(s) 769, 1248
Bst2UI CCWGG 1 cut(s) 1299
Bst4CI ACNGT 3 cut(s) 62, 757, 1242
Bst6I CTCTTC 3 cut(s) 38, 455, 1038
BstAPI GCANNNNNTGC 1 cut(s) 248
BstAUI TGTACA 1 cut(s) 640
BstBI TTCGAA 1 cut(s) 814
BstC8I GCNNGC 6 cut(s) 18, 487, 681, 1002, 1347, 1416
BstF5I GGATG 7 cut(s) 171, 282, 292, 322, 661, 832, 968
BstFNI CGCG 1 cut(s) 428
BstKTI GATC 8 cut(s) 154, 469, 936, 1011, 1096, 1377, 1490, 1612
BstMAI GTCTC 2 cut(s) 1506, 1611
BstMBI GATC 8 cut(s) 151, 466, 933, 1008, 1093, 1374, 1487, 1609
BstMWI GCNNNNNNNGC 8 cut(s) 132, 248, 989, 1076, 1136, 1355, 1411, 1439
BstNI CCWGG 1 cut(s) 1299
BstNSI RCATGY 2 cut(s) 476, 1418
BstSCI CCNGG 1 cut(s) 1297
BstSFI CTRYAG 2 cut(s) 508, 1569
BstUI CGCG 1 cut(s) 428
BstV1I GCAGC 1 cut(s) 215
BstX2I RGATCY 3 cut(s) 466, 933, 1609
BstXI CCANNNNNNTGG 1 cut(s) 1022
BstYI RGATCY 3 cut(s) 466, 933, 1609
Bsu15I ATCGAT 1 cut(s) 901
BsuI GTATCC 1 cut(s) 970
BsuRI GGCC 6 cut(s) 557, 794, 914, 1205, 1365, 1517
BsuTUI ATCGAT 1 cut(s) 901
BtsCI GGATG 7 cut(s) 171, 282, 292, 322, 661, 832, 968
BtsIMutI CAGTG 3 cut(s) 1004, 1020, 1247
Cac8I GCNNGC 6 cut(s) 18, 487, 681, 1002, 1347, 1416
CciI TCATGA 1 cut(s) 1260
Cfr13I GGNCC 3 cut(s) 169, 584, 793
ClaI ATCGAT 1 cut(s) 901
CseI GACGC 1 cut(s) 1619
CsiI ACCWGGT 1 cut(s) 1297
Csp6I GTAC 3 cut(s) 129, 641, 923
CviAII CATG 6 cut(s) 100, 473, 1220, 1228, 1261, 1415
CviQI GTAC 3 cut(s) 129, 641, 923
DpnI GATC 8 cut(s) 153, 468, 935, 1010, 1095, 1376, 1489, 1611
DpnII GATC 8 cut(s) 151, 466, 933, 1008, 1093, 1374, 1487, 1609
DraI TTTAAA 1 cut(s) 1450
DraIII CACNNNGTG 1 cut(s) 1301
Eam1104I CTCTTC 3 cut(s) 38, 455, 1038
EarI CTCTTC 3 cut(s) 38, 455, 1038
Ecl136II GAGCTC 1 cut(s) 505
Eco130I CCWWGG 2 cut(s) 769, 1248
Eco24I GRGCYC 2 cut(s) 507, 1002
Eco32I GATATC 1 cut(s) 872
Eco47I GGWCC 2 cut(s) 169, 584
Eco53kI GAGCTC 1 cut(s) 505
Eco57I CTGAAG 5 cut(s) 374, 609, 1014, 1062, 1181
EcoICRI GAGCTC 1 cut(s) 505
EcoO109I RGGNCCY 1 cut(s) 793
EcoRI GAATTC 1 cut(s) 380
EcoRII CCWGG 1 cut(s) 1297
EcoRV GATATC 1 cut(s) 872
EcoT14I CCWWGG 2 cut(s) 769, 1248
EcoT22I ATGCAT 1 cut(s) 253
EcoT38I GRGCYC 2 cut(s) 507, 1002
ErhI CCWWGG 2 cut(s) 769, 1248
Esp3I CGTCTC 1 cut(s) 1611
FaeI CATG 6 cut(s) 103, 476, 1223, 1231, 1264, 1418
FalI AAGNNNNNCTT 6 cut(s) 1035, 1067, 1068, 1100, 1629, 1661
FatI CATG 6 cut(s) 99, 472, 1219, 1227, 1260, 1414
FbaI TGATCA 1 cut(s) 151
Fnu4HI GCNGC 3 cut(s) 14, 204, 429
FokI GGATG 7 cut(s) 178, 289, 299, 329, 668, 839, 975
FriOI GRGCYC 2 cut(s) 507, 1002
Fsp4HI GCNGC 3 cut(s) 14, 204, 429
FspBI CTAG 1 cut(s) 1131
GluI GCNGC 3 cut(s) 14, 204, 429
GsuI CTGGAG 2 cut(s) 590, 1614
HaeIII GGCC 6 cut(s) 557, 794, 914, 1205, 1365, 1517
HapII CCGG 3 cut(s) 87, 93, 123
HgaI GACGC 1 cut(s) 1619
Hin1II CATG 6 cut(s) 103, 476, 1223, 1231, 1264, 1418
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HindIII AAGCTT 3 cut(s) 521, 1027, 1347
HinfI GANTC 8 cut(s) 575, 785, 806, 842, 1223, 1279, 1499, 1596
HpaI GTTAAC 1 cut(s) 58
HpaII CCGG 3 cut(s) 87, 93, 123
HphI GGTGA 2 cut(s) 46, 1313
Hpy166II GTNNAC 2 cut(s) 58, 1114
Hpy188III TCNNGA 9 cut(s) 195, 587, 803, 1052, 1064, 1091, 1261, 1505, 1634
Hpy8I GTNNAC 2 cut(s) 58, 1114
HpyAV CCTTC 8 cut(s) 31, 84, 275, 398, 443, 775, 913, 989
HpyCH4III ACNGT 3 cut(s) 62, 757, 1242
HpyF10VI GCNNNNNNNGC 8 cut(s) 132, 248, 989, 1076, 1136, 1355, 1411, 1439
Hsp92II CATG 6 cut(s) 103, 476, 1223, 1231, 1264, 1418
Ksp22I TGATCA 1 cut(s) 151
KspAI GTTAAC 1 cut(s) 58
Kzo9I GATC 8 cut(s) 151, 466, 933, 1008, 1093, 1374, 1487, 1609
LguI GCTCTTC 1 cut(s) 1038
LmnI GCTCC 2 cut(s) 115, 1292
Lsp1109I GCAGC 1 cut(s) 215
LweI GCATC 7 cut(s) 238, 260, 307, 488, 1057, 1345, 1549
MabI ACCWGGT 1 cut(s) 1297
MaeI CTAG 1 cut(s) 1131
MaeIII GTNAC 3 cut(s) 137, 300, 1477
MalI GATC 8 cut(s) 153, 468, 935, 1010, 1095, 1376, 1489, 1611
MbiI CCGCTC 1 cut(s) 20
MboI GATC 8 cut(s) 151, 466, 933, 1008, 1093, 1374, 1487, 1609
MflI RGATCY 3 cut(s) 466, 933, 1609
MhlI GDGCHC 3 cut(s) 507, 1002, 1297
MlyI GAGTC 6 cut(s) 584, 779, 851, 1232, 1508, 1605
MmeI TCCRAC 2 cut(s) 252, 1176
Mph1103I ATGCAT 1 cut(s) 253
MroXI GAANNNNTTC 1 cut(s) 1047
MspA1I CMGCKG 2 cut(s) 646, 992
MspI CCGG 3 cut(s) 87, 93, 123
MspR9I CCNGG 1 cut(s) 1299
Mva1269I GAATGC 2 cut(s) 870, 1444
MvaI CCWGG 1 cut(s) 1299
MvnI CGCG 1 cut(s) 428
MwoI GCNNNNNNNGC 8 cut(s) 132, 248, 989, 1076, 1136, 1355, 1411, 1439
NdeII GATC 8 cut(s) 151, 466, 933, 1008, 1093, 1374, 1487, 1609
NlaIII CATG 6 cut(s) 103, 476, 1223, 1231, 1264, 1418
NlaIV GGNNCC 5 cut(s) 91, 97, 171, 468, 1326
NmeAIII GCCGAG 3 cut(s) 154, 940, 1543
NsiI ATGCAT 1 cut(s) 253
NspI RCATGY 2 cut(s) 476, 1418
NspV TTCGAA 1 cut(s) 814
PaeI GCATGC 1 cut(s) 1418
PagI TCATGA 1 cut(s) 1260
PciSI GCTCTTC 1 cut(s) 1038
PctI GAATGC 2 cut(s) 870, 1444
PdmI GAANNNNTTC 1 cut(s) 1047
PfeI GAWTC 2 cut(s) 806, 1279
PkrI GCNGC 3 cut(s) 15, 205, 430
PleI GAGTC 6 cut(s) 583, 779, 850, 1231, 1507, 1604
PpsI GAGTC 6 cut(s) 583, 779, 850, 1231, 1507, 1604
Psp124BI GAGCTC 1 cut(s) 507
Psp6I CCWGG 1 cut(s) 1297
PspGI CCWGG 1 cut(s) 1297
PspN4I GGNNCC 5 cut(s) 91, 97, 171, 468, 1326
PspPI GGNCC 3 cut(s) 169, 584, 793
PsrI GAACNNNNNNTAC 2 cut(s) 88, 120
PsuI RGATCY 3 cut(s) 466, 933, 1609
PvuII CAGCTG 1 cut(s) 992
RsaI GTAC 3 cut(s) 130, 642, 924
RsaNI GTAC 3 cut(s) 129, 641, 923
SacI GAGCTC 1 cut(s) 507
SapI GCTCTTC 1 cut(s) 1038
SatI GCNGC 3 cut(s) 14, 204, 429
Sau3AI GATC 8 cut(s) 151, 466, 933, 1008, 1093, 1374, 1487, 1609
Sau96I GGNCC 3 cut(s) 169, 584, 793
SchI GAGTC 6 cut(s) 584, 779, 851, 1232, 1508, 1605
ScrFI CCNGG 1 cut(s) 1299
SduI GDGCHC 3 cut(s) 507, 1002, 1297
SexAI ACCWGGT 1 cut(s) 1297
SfaNI GCATC 7 cut(s) 238, 260, 307, 488, 1057, 1345, 1549
SfcI CTRYAG 2 cut(s) 508, 1569
SfuI TTCGAA 1 cut(s) 814
SinI GGWCC 2 cut(s) 169, 584
SmiI ATTTAAAT 1 cut(s) 1450
SmlI CTYRAG 2 cut(s) 821, 1089
SmoI CTYRAG 2 cut(s) 821, 1089
SphI GCATGC 1 cut(s) 1418
SsiI CCGC 7 cut(s) 13, 20, 126, 135, 428, 470, 646
SspI AATATT 1 cut(s) 1168
SspMI CTAG 1 cut(s) 1131
SstI GAGCTC 1 cut(s) 507
StyD4I CCNGG 1 cut(s) 1297
StyI CCWWGG 2 cut(s) 769, 1248
SwaI ATTTAAAT 1 cut(s) 1450
TaaI ACNGT 3 cut(s) 62, 757, 1242
TaqI TCGA 4 cut(s) 814, 901, 1072, 1428
TatI WGTACW 1 cut(s) 640
TauI GCSGC 2 cut(s) 16, 431
TfiI GAWTC 2 cut(s) 806, 1279
TscAI CASTG 3 cut(s) 1011, 1027, 1247
TseI GCWGC 1 cut(s) 203
TspDTI ATGAA 5 cut(s) 605, 672, 1112, 1249, 1277
TspGWI ACGGA 1 cut(s) 102
TspRI CASTG 3 cut(s) 1011, 1027, 1247
VpaK11BI GGWCC 2 cut(s) 169, 584
XapI RAATTY 4 cut(s) 223, 380, 1256, 1668
XceI RCATGY 2 cut(s) 476, 1418
XcmI CCANNNNNNNNNTGG 2 cut(s) 235, 565
XmnI GAANNNNTTC 1 cut(s) 1047
XspI CTAG 1 cut(s) 1131
Zsp2I ATGCAT 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.