Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0007891

Physical Location & Seq

Genomic Coordinates Reverse (-)

15184965 .. 15187237

Gene Structure 2273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGCCTCTGATCGTATTTCAGGGATGCTCATGGGCGTTAAAGATAAAATGACCCCTAATCATATTTCAGGGGTGTTCATGAGTGCTAAAGATAAAATGGCCCCTAATCATATTTCAGGGGTGCTCATGGGTGTTAAAGATATTCAGATCAAGCCAAATCTGAAACGCTTCCTCATGGGAAGTGGTGTGGGGAGGAAGAAGAAAGAGGCCACCATGGCAAAGAAACCGTCGTGGATGATGCCTGCAGTCTCACATGGATATCACACCTGTGAGAGCTACACATCACCGGCTACCTATGGCGATTCCAACTCCGACTTTATTGTGGCTCAGAGAGAGCAAATCGAAGAGCTTGAGCTCTGGTTTTTCGGAGTTTTCGATGCCCGGGTTGGCGACCGGGTTACCAAGTACATGCAGTCACATTTGTTTGACAAGAAGCCTAAAGAGTCTCATATAAGGGGAAAGAGCAAGGAGACGATGAGAAAAGCCTTTCTTGGTGCTAGGTCAAAGGTTAGAGAGGCCTCGGAGGAGACGAACGGAGTCGGTTCAGTTTCCGCGATGGTGATGGACGGGGAAAAGCTTGTATTGGCTAACATGGGAGACTATAGAGCAGTTGTGTGTAAAGATGGTTTCGCTCATCAGATAGGCACCAAGAAGAAGCAATCAACCAAAAAGATTTGGTCACACAGGTTGTTTAGAGCAAAGACCAAAACTTGTAAAAGCTCAGACCTTGTTGTTGGGGTTGAAGGGGTTGATCCGGATACTGAATTTGTGATTTTAGCCAGCAATGGCATATGGGAGGTAATGAAGAATCAAGAGGCTGTGAATCTCATCCGAAGCATCGAAAATCCACAAACGGCTTCCGAGTATTTGGCGGAGGAAGCTTCGAACAGAATGAGCAGAGGCAGCATTTCTTGCTTGGTCATCAGATTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 map04011

Pfam Domains

Protein Families

PP2C

Protein Analysis

312

Amino Acids

34.65

Weight (kDa)

9.44

Isoelectric Point (pI)

39.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	120 - 218	1.1e-09	Protein phosphatase 2C
PP2C	PF00481	251 - 301	5.7e-10	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23360
fragaria_vesca	FvH4_4g03890 FvH4_4g03890 FvH4_4g03890 FvH4_4g03890
malus_domestica	MD13G1215600.v1.1 MD16G1220800.v1.1
prunus_persica	Prupe.1G041200_v2.0.a1 Prupe.1G041200_v2.0.a1
pyrus_communis	pycom13g18910 pycom16g18520
rosa_chinensis	RchiOBHm_Chr4g0393921
rosa_laevigata	RLG00000009727
rosa_multiflora	Rmu_sc0000928.1_g000036
rosa_roxburghii	Rroxscaffold_5G00338990
rosa_rugosa	Rorug03G0370700.1 Rorug03G0370800 Rorug03G0370900.1 Rorug03G0371000.1
rosa_samantha	Rh4AG049500 Rh4BG045900 Rh4CG053000 Rh4DG046500
rosa_wichuraiana	Rw4G003920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	644
AccII	CGCG	1 cut(s)	554
AccIII	TCCGGA	1 cut(s)	754
AciI	CCGC	2 cut(s)	552, 872
AclWI	GGATC	1 cut(s)	746
AcsI	RAATTY	1 cut(s)	764
AfaI	GTAC	1 cut(s)	407
AgsI	TTSAA	1 cut(s)	743
AleI	CACNNNNGTG	1 cut(s)	267
AluBI	AGCT	6 cut(s)	276, 349, 355, 577, 720, 881
AluI	AGCT	6 cut(s)	276, 349, 355, 577, 720, 881
Alw21I	GWGCWC	2 cut(s)	126, 357
Alw26I	GTCTC	5 cut(s)	253, 450, 464, 521, 591
AlwI	GGATC	1 cut(s)	746
Ama87I	CYCGRG	1 cut(s)	381
Aor13HI	TCCGGA	1 cut(s)	754
AoxI	GGCC	4 cut(s)	3, 99, 207, 516
ApeKI	GCWGC	1 cut(s)	903
ApoI	RAATTY	1 cut(s)	764
ArsI	GACNNNNNNTTYG	2 cut(s)	212, 244
Asp700I	GAANNNNTTC	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	100
AsuC2I	CCSGG	3 cut(s)	382, 383, 395
AsuHPI	GGTGA	2 cut(s)	276, 571
AsuII	TTCGAA	1 cut(s)	884
AvaI	CYCGRG	1 cut(s)	381
BanI	GGYRCC	1 cut(s)	644
BanII	GRGCYC	1 cut(s)	357
Bbv12I	GWGCWC	2 cut(s)	126, 357
BbvI	GCAGC	1 cut(s)	915
BccI	CCATC	3 cut(s)	550, 556, 617
BceAI	ACGGC	1 cut(s)	870
BciVI	GTATCC	1 cut(s)	751
BcnI	CCSGG	3 cut(s)	382, 383, 395
BcoDI	GTCTC	5 cut(s)	253, 450, 464, 521, 591
BfaI	CTAG	1 cut(s)	498
BfmI	CTRYAG	2 cut(s)	243, 601
BfuI	GTATCC	1 cut(s)	751
BglI	GCCNNNNNGGC	1 cut(s)	215
BisI	GCNGC	1 cut(s)	904
BlsI	GCNGC	1 cut(s)	905
Bme1390I	CCNGG	3 cut(s)	382, 383, 395
BmeT110I	CYCGRG	1 cut(s)	381
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	2 cut(s)	102, 646
BmrFI	CCNGG	3 cut(s)	382, 383, 395
BmsI	GCATC	4 cut(s)	15, 228, 367, 846
Bpu14I	TTCGAA	1 cut(s)	884
BpuEI	CTTGAG	1 cut(s)	371
BpuMI	CCSGG	3 cut(s)	382, 383, 395
BsaJI	CCNNGG	3 cut(s)	213, 381, 519
BsaWI	WCCGGW	1 cut(s)	754
Bse118I	RCCGGY	1 cut(s)	286
Bse3DI	GCAATG	1 cut(s)	790
BseAI	TCCGGA	1 cut(s)	754
BseDI	CCNNGG	3 cut(s)	213, 381, 519
BseGI	GGATG	3 cut(s)	30, 240, 828
BseMI	GCAATG	1 cut(s)	790
BseMII	CTCAG	2 cut(s)	341, 735
BseRI	GAGGAG	1 cut(s)	539
BseXI	GCAGC	1 cut(s)	915
Bsh1236I	CGCG	1 cut(s)	554
Bsh1285I	CGRYCG	1 cut(s)	394
BshFI	GGCC	4 cut(s)	5, 101, 209, 518
BshNI	GGYRCC	1 cut(s)	644
BsiEI	CGRYCG	1 cut(s)	394
BsiHKAI	GWGCWC	2 cut(s)	126, 357
BsiHKCI	CYCGRG	1 cut(s)	381
BsiSI	CCGG	4 cut(s)	287, 382, 394, 755
BsmAI	GTCTC	5 cut(s)	253, 450, 464, 521, 591
BsmBI	CGTCTC	2 cut(s)	464, 521
BsnI	GGCC	4 cut(s)	5, 101, 209, 518
BsoBI	CYCGRG	1 cut(s)	381
Bsp119I	TTCGAA	1 cut(s)	884
Bsp1286I	GDGCHC	2 cut(s)	126, 357
Bsp13I	TCCGGA	1 cut(s)	754
Bsp143I	GATC	3 cut(s)	10, 147, 751
Bsp19I	CCATGG	1 cut(s)	213
BspACI	CCGC	2 cut(s)	552, 872
BspANI	GGCC	4 cut(s)	5, 101, 209, 518
BspCNI	CTCAG	2 cut(s)	340, 734
BspEI	TCCGGA	1 cut(s)	754
BspFNI	CGCG	1 cut(s)	554
BspHI	TCATGA	1 cut(s)	78
BspLI	GGNNCC	2 cut(s)	102, 646
BspMAI	CTGCAG	1 cut(s)	247
BspPI	GGATC	1 cut(s)	746
BspQI	GCTCTTC	1 cut(s)	339
BspT104I	TTCGAA	1 cut(s)	884
BspT107I	GGYRCC	1 cut(s)	644
BsrDI	GCAATG	1 cut(s)	790
BsrFI	RCCGGY	1 cut(s)	286
BssAI	RCCGGY	1 cut(s)	286
BssECI	CCNNGG	3 cut(s)	213, 381, 519
BssMI	GATC	3 cut(s)	10, 147, 751
BssT1I	CCWWGG	1 cut(s)	213
Bst4CI	ACNGT	1 cut(s)	228
Bst6I	CTCTTC	1 cut(s)	339
BstAPI	GCANNNNNTGC	1 cut(s)	912
BstBI	TTCGAA	1 cut(s)	884
BstC8I	GCNNGC	2 cut(s)	243, 781
BstDEI	CTNAG	2 cut(s)	327, 721
BstDSI	CCRYGG	1 cut(s)	213
BstEII	GGTNACC	1 cut(s)	397
BstF5I	GGATG	3 cut(s)	30, 240, 828
BstFNI	CGCG	1 cut(s)	554
BstKTI	GATC	3 cut(s)	13, 150, 754
BstMAI	GTCTC	5 cut(s)	253, 450, 464, 521, 591
BstMBI	GATC	3 cut(s)	10, 147, 751
BstMCI	CGRYCG	1 cut(s)	394
BstMWI	GCNNNNNNNGC	4 cut(s)	215, 878, 903, 912
BstNSI	RCATGY	1 cut(s)	412
BstPI	GGTNACC	1 cut(s)	397
BstSCI	CCNGG	3 cut(s)	380, 381, 393
BstSFI	CTRYAG	2 cut(s)	243, 601
BstUI	CGCG	1 cut(s)	554
BstV1I	GCAGC	1 cut(s)	915
BsuI	GTATCC	1 cut(s)	751
BsuRI	GGCC	4 cut(s)	5, 101, 209, 518
BtgI	CCRYGG	1 cut(s)	213
BtgZI	GCGATG	1 cut(s)	569
BtsCI	GGATG	3 cut(s)	30, 240, 828
Cac8I	GCNNGC	2 cut(s)	243, 781
CciI	TCATGA	1 cut(s)	78
Cfr10I	RCCGGY	1 cut(s)	286
Cfr13I	GGNCC	1 cut(s)	100
Cfr9I	CCCGGG	1 cut(s)	381
Csp6I	GTAC	1 cut(s)	406
CviAII	CATG	8 cut(s)	31, 79, 127, 175, 214, 254, 409, 592
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	2 cut(s)	327, 721
DpnI	GATC	3 cut(s)	12, 149, 753
DpnII	GATC	3 cut(s)	10, 147, 751
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
EciI	GGCGGA	1 cut(s)	887
Ecl136II	GAGCTC	1 cut(s)	355
Eco130I	CCWWGG	1 cut(s)	213
Eco147I	AGGCCT	1 cut(s)	518
Eco24I	GRGCYC	1 cut(s)	357
Eco32I	GATATC	1 cut(s)	260
Eco53kI	GAGCTC	1 cut(s)	355
Eco88I	CYCGRG	1 cut(s)	381
Eco91I	GGTNACC	1 cut(s)	397
EcoICRI	GAGCTC	1 cut(s)	355
EcoO65I	GGTNACC	1 cut(s)	397
EcoRV	GATATC	1 cut(s)	260
EcoT14I	CCWWGG	1 cut(s)	213
EcoT38I	GRGCYC	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	213
Esp3I	CGTCTC	2 cut(s)	464, 521
FaeI	CATG	8 cut(s)	34, 82, 130, 178, 217, 257, 412, 595
FalI	AAGNNNNNCTT	2 cut(s)	474, 506
FatI	CATG	8 cut(s)	30, 78, 126, 174, 213, 253, 408, 591
FauNDI	CATATG	1 cut(s)	791
Fnu4HI	GCNGC	1 cut(s)	904
FokI	GGATG	3 cut(s)	37, 247, 815
FriOI	GRGCYC	1 cut(s)	357
Fsp4HI	GCNGC	1 cut(s)	904
FspBI	CTAG	1 cut(s)	498
GluI	GCNGC	1 cut(s)	904
HaeIII	GGCC	4 cut(s)	5, 101, 209, 518
HapII	CCGG	4 cut(s)	287, 382, 394, 755
Hin1II	CATG	8 cut(s)	34, 82, 130, 178, 217, 257, 412, 595
HindIII	AAGCTT	2 cut(s)	575, 879
HinfI	GANTC	5 cut(s)	302, 443, 537, 808, 823
HpaII	CCGG	4 cut(s)	287, 382, 394, 755
HphI	GGTGA	2 cut(s)	276, 571
Hpy188III	TCNNGA	3 cut(s)	79, 755, 812
Hpy99I	CGWCG	1 cut(s)	232
HpyAV	CCTTC	1 cut(s)	737
HpyCH4III	ACNGT	1 cut(s)	228
HpyCH4V	TGCA	2 cut(s)	245, 412
HpyF10VI	GCNNNNNNNGC	4 cut(s)	215, 878, 903, 912
HpyF3I	CTNAG	2 cut(s)	327, 721
Hsp92II	CATG	8 cut(s)	34, 82, 130, 178, 217, 257, 412, 595
Kpn2I	TCCGGA	1 cut(s)	754
Kzo9I	GATC	3 cut(s)	10, 147, 751
LguI	GCTCTTC	1 cut(s)	339
Lsp1109I	GCAGC	1 cut(s)	915
LweI	GCATC	4 cut(s)	15, 228, 367, 846
MaeI	CTAG	1 cut(s)	498
MaeIII	GTNAC	3 cut(s)	397, 414, 678
MalI	GATC	3 cut(s)	12, 149, 753
MboI	GATC	3 cut(s)	10, 147, 751
MboII	GAAGA	5 cut(s)	208, 211, 356, 664, 817
MhlI	GDGCHC	2 cut(s)	126, 357
MluCI	AATT	1 cut(s)	764
MlyI	GAGTC	2 cut(s)	452, 546
MmeI	TCCRAC	2 cut(s)	330, 336
MroI	TCCGGA	1 cut(s)	754
MroXI	GAANNNNTTC	1 cut(s)	167
MseI	TTAA	3 cut(s)	39, 135, 934
MslI	CAYNNNNRTG	1 cut(s)	267
MspI	CCGG	4 cut(s)	287, 382, 394, 755
MspR9I	CCNGG	3 cut(s)	382, 383, 395
MvnI	CGCG	1 cut(s)	554
MwoI	GCNNNNNNNGC	4 cut(s)	215, 878, 903, 912
NciI	CCSGG	3 cut(s)	382, 383, 395
NcoI	CCATGG	1 cut(s)	213
NdeI	CATATG	1 cut(s)	791
NdeII	GATC	3 cut(s)	10, 147, 751
NlaIII	CATG	8 cut(s)	34, 82, 130, 178, 217, 257, 412, 595
NlaIV	GGNNCC	2 cut(s)	102, 646
NmuCI	GTSAC	2 cut(s)	414, 678
NspI	RCATGY	1 cut(s)	412
NspV	TTCGAA	1 cut(s)	884
OliI	CACNNNNGTG	1 cut(s)	267
PagI	TCATGA	1 cut(s)	78
PceI	AGGCCT	1 cut(s)	518
PciSI	GCTCTTC	1 cut(s)	339
PcsI	WCGNNNNNNNCGW	2 cut(s)	372, 527
PdmI	GAANNNNTTC	1 cut(s)	167
PfeI	GAWTC	3 cut(s)	302, 808, 823
PkrI	GCNGC	1 cut(s)	905
PleI	GAGTC	2 cut(s)	451, 545
PpsI	GAGTC	2 cut(s)	451, 545
Psp124BI	GAGCTC	1 cut(s)	357
PspEI	GGTNACC	1 cut(s)	397
PspN4I	GGNNCC	2 cut(s)	102, 646
PspPI	GGNCC	1 cut(s)	100
PstI	CTGCAG	1 cut(s)	247
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
RseI	CAYNNNNRTG	1 cut(s)	267
SacI	GAGCTC	1 cut(s)	357
SapI	GCTCTTC	1 cut(s)	339
SaqAI	TTAA	3 cut(s)	39, 135, 934
SatI	GCNGC	1 cut(s)	904
Sau3AI	GATC	3 cut(s)	10, 147, 751
Sau96I	GGNCC	1 cut(s)	100
SchI	GAGTC	2 cut(s)	452, 546
ScrFI	CCNGG	3 cut(s)	382, 383, 395
SduI	GDGCHC	2 cut(s)	126, 357
SfaNI	GCATC	4 cut(s)	15, 228, 367, 846
SfcI	CTRYAG	2 cut(s)	243, 601
SfuI	TTCGAA	1 cut(s)	884
SmaI	CCCGGG	1 cut(s)	383
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	1 cut(s)	764
SseBI	AGGCCT	1 cut(s)	518
SsiI	CCGC	2 cut(s)	552, 872
SspMI	CTAG	1 cut(s)	498
SstI	GAGCTC	1 cut(s)	357
StuI	AGGCCT	1 cut(s)	518
StyD4I	CCNGG	3 cut(s)	380, 381, 393
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	1 cut(s)	228
TaqI	TCGA	4 cut(s)	342, 375, 840, 884
TasI	AATT	1 cut(s)	764
TatI	WGTACW	1 cut(s)	405
TfiI	GAWTC	3 cut(s)	302, 808, 823
Tru1I	TTAA	3 cut(s)	39, 135, 934
Tru9I	TTAA	3 cut(s)	39, 135, 934
TseFI	GTSAC	2 cut(s)	414, 678
TseI	GCWGC	1 cut(s)	903
Tsp45I	GTSAC	2 cut(s)	414, 678
TspDTI	ATGAA	2 cut(s)	67, 818
TspGWI	ACGGA	1 cut(s)	549
TspMI	CCCGGG	1 cut(s)	381
XapI	RAATTY	1 cut(s)	764
XceI	RCATGY	1 cut(s)	412
XmaI	CCCGGG	1 cut(s)	381
XmnI	GAANNNNTTC	1 cut(s)	167
XspI	CTAG	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.