Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0010381

Physical Location & Seq

Genomic Coordinates Reverse (-)

15262755 .. 15265512

Gene Structure 2758 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGCCATGGCTTCTCTGAGCTCTCTCCCTCACTCTCTACATTCCTCGCCTTCTACTTCTTCTGCAAAACATGTTATTCCAAGCAAACCACCCTGCCCAAAACGCCTCCGTTTTGGTTCGTCAAATCGCCGTCACACCAAAAGCTTTGCTCTGAGAGCAGCTGTGGACGAGGTTTCTGTTCTCGAACTGCCGCCGTCTTCCGGAAGCAAAACCACGCCCAACCCTGAACTTGTAGCGTCTTTAAAGCTCAAGCTATTGAGTGCTGTTTCTGGGCTAAACAGAGGTCTTGCAGCATCGGGAGAGGATCTACAAAAGGCAGAAGCTGCTGCCAAGGAGATTGAAGCTGCTGGAGGTCCAGTGGATATCTCAACTGATCTTGATAAACTGCAAGGGAGATGGAAATTGATATATAGCAGTGCATTTTCTTCTCGTACTCTAGGTGGGAGCCGTCCTGGTCCTCCCACCGGAAGGCTACTCCCAATTACCTTAGGCCAGGTATTTCAACGGATTGACATCTTCAGCAAAGACTTTGATAACATAGTGGAGCTTGAACTAGGTGCTCCATGGCCCCTGCCGCCCGTTGAAGCAACTGCCACTTTGGCCCACAAATTTGAACTCATAGGATCTTCCAGGGTTAAGATCATTTTTGAGAAAACTACTGTGAAGACTACTGGAAACTTATCGCAGCTTCCTCCATTAGAGTTACCTAAGTTACCAGAAGGACTACGACCTCCGTCTAACCCAGGAAGTGGTGAATTTGACGTAACCTACCTTGATGCTGATATCCGCATCACCAGAGGAGATAGAGACGAGCTGAGGGTTTTTGTTGTTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006979 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010035 GO:0010193 GO:0010287 GO:0016020 GO:0016043 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042221 GO:0042493 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071840 GO:0071944 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

279

Amino Acids

29.79

Weight (kDa)

9.32

Isoelectric Point (pI)

46.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	80 - 275	1.5e-44	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23400 AT3G23400 AT3G23400 AT3G23400
malus_domestica	MD13G1216500.v1.1 MD16G1221800.v1.1
prunus_persica	Prupe.1G042200_v2.0.a1
pyrus_communis	pycom13g18990 pycom16g18600
rosa_chinensis	RchiOBHm_Chr4g0394281
rosa_laevigata	RLG00000009709
rosa_multiflora	Rmu_co8159986.1_g000001 Rmu_sc0007246.1_g000003 Rmu_ssc0000473.1_g000033
rosa_roxburghii	Rroxscaffold_5G00339310
rosa_rugosa	Rorug03G0368100.1
rosa_samantha	Rh4AG051300 Rh4BG048500 Rh4CG055100 Rh4DG048200
rosa_wichuraiana	Rw4G004090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	749
AccIII	TCCGGA	1 cut(s)	200
AciI	CCGC	3 cut(s)	191, 575, 787
AclWI	GGATC	2 cut(s)	312, 631
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	608, 755
AcuI	CTGAAG	1 cut(s)	502
AfaI	GTAC	1 cut(s)	433
AfiI	CCNNNNNNNGG	4 cut(s)	200, 464, 468, 749
AflIII	ACRYGT	1 cut(s)	70
AgsI	TTSAA	5 cut(s)	341, 503, 551, 584, 614
AjnI	CCWGG	4 cut(s)	451, 492, 629, 742
Alw21I	GWGCWC	2 cut(s)	23, 562
Alw26I	GTCTC	1 cut(s)	801
AlwI	GGATC	2 cut(s)	312, 631
AlwNI	CAGNNNCTG	1 cut(s)	323
Aor13HI	TCCGGA	1 cut(s)	200
AoxI	GGCC	4 cut(s)	3, 490, 566, 600
ApeKI	GCWGC	6 cut(s)	158, 290, 323, 326, 344, 685
ApoI	RAATTY	2 cut(s)	608, 755
AspS9I	GGNCC	4 cut(s)	353, 455, 567, 601
AsuHPI	GGTGA	2 cut(s)	764, 784
AvaII	GGWCC	2 cut(s)	353, 455
AxyI	CCTNAGG	1 cut(s)	487
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	23
BbsI	GAAGAC	2 cut(s)	189, 671
Bbv12I	GWGCWC	2 cut(s)	23, 562
BbvCI	CCTCAGC	1 cut(s)	815
BbvI	GCAGC	6 cut(s)	170, 302, 310, 313, 331, 697
BccI	CCATC	1 cut(s)	390
BceAI	ACGGC	3 cut(s)	114, 178, 432
BciT130I	CCWGG	4 cut(s)	453, 494, 631, 744
BcoDI	GTCTC	1 cut(s)	801
BfaI	CTAG	2 cut(s)	437, 554
BglI	GCCNNNNNGGC	1 cut(s)	599
BisI	GCNGC	8 cut(s)	159, 191, 291, 324, 327, 345, 575, 686
BlsI	GCNGC	8 cut(s)	160, 192, 292, 325, 328, 346, 576, 687
Bme1390I	CCNGG	4 cut(s)	453, 494, 631, 744
Bme18I	GGWCC	2 cut(s)	353, 455
BmgT120I	GGNCC	4 cut(s)	353, 455, 567, 601
BmiI	GGNNCC	2 cut(s)	446, 569
BmrFI	CCNGG	4 cut(s)	453, 494, 631, 744
BmsI	GCATC	3 cut(s)	302, 766, 798
BoxI	GACNNNNGTC	1 cut(s)	733
BpiI	GAAGAC	2 cut(s)	189, 671
BpmI	CTGGAG	1 cut(s)	369
Bpu10I	CCTNAGC	1 cut(s)	815
BpuEI	CTTGAG	1 cut(s)	233
BsaBI	GATNNNNATC	1 cut(s)	512
BsaJI	CCNNGG	5 cut(s)	6, 330, 563, 630, 742
BsaWI	WCCGGW	2 cut(s)	200, 464
BsaXI	ACNNNNNCTCC	2 cut(s)	342, 372
Bsc4I	CCNNNNNNNGG	4 cut(s)	200, 464, 468, 749
Bse1I	ACTGG	2 cut(s)	356, 676
Bse21I	CCTNAGG	1 cut(s)	487
Bse8I	GATNNNNATC	1 cut(s)	512
BseAI	TCCGGA	1 cut(s)	200
BseBI	CCWGG	4 cut(s)	453, 494, 631, 744
BseDI	CCNNGG	5 cut(s)	6, 330, 563, 630, 742
BseJI	GATNNNNATC	1 cut(s)	512
BseLI	CCNNNNNNNGG	4 cut(s)	200, 464, 468, 749
BseMII	CTCAG	3 cut(s)	8, 143, 806
BseNI	ACTGG	2 cut(s)	356, 676
BseRI	GAGGAG	1 cut(s)	813
BseXI	GCAGC	6 cut(s)	170, 302, 310, 313, 331, 697
BshFI	GGCC	4 cut(s)	5, 492, 568, 602
BsiHKAI	GWGCWC	2 cut(s)	23, 562
BsiSI	CCGG	2 cut(s)	201, 465
BslI	CCNNNNNNNGG	4 cut(s)	200, 464, 468, 749
BsmAI	GTCTC	1 cut(s)	801
BsmBI	CGTCTC	1 cut(s)	801
BsnI	GGCC	4 cut(s)	5, 492, 568, 602
Bsp1286I	GDGCHC	2 cut(s)	23, 562
Bsp13I	TCCGGA	1 cut(s)	200
Bsp143I	GATC	4 cut(s)	304, 373, 623, 639
Bsp19I	CCATGG	2 cut(s)	6, 563
BspACI	CCGC	3 cut(s)	191, 575, 787
BspANI	GGCC	4 cut(s)	5, 492, 568, 602
BspCNI	CTCAG	3 cut(s)	9, 144, 807
BspEI	TCCGGA	1 cut(s)	200
BspLI	GGNNCC	2 cut(s)	446, 569
BspPI	GGATC	2 cut(s)	312, 631
BsrI	ACTGG	2 cut(s)	356, 676
BssECI	CCNNGG	5 cut(s)	6, 330, 563, 630, 742
BssMI	GATC	4 cut(s)	304, 373, 623, 639
BssT1I	CCWWGG	3 cut(s)	6, 330, 563
Bst2UI	CCWGG	4 cut(s)	453, 494, 631, 744
Bst4CI	ACNGT	1 cut(s)	661
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstDEI	CTNAG	5 cut(s)	17, 152, 487, 708, 815
BstDSI	CCRYGG	2 cut(s)	6, 563
BstKTI	GATC	4 cut(s)	307, 376, 626, 642
BstMAI	GTCTC	1 cut(s)	801
BstMBI	GATC	4 cut(s)	304, 373, 623, 639
BstMWI	GCNNNNNNNGC	5 cut(s)	102, 155, 323, 574, 599
BstNI	CCWGG	4 cut(s)	453, 494, 631, 744
BstNSI	RCATGY	1 cut(s)	74
BstPAI	GACNNNNGTC	1 cut(s)	733
BstSCI	CCNGG	4 cut(s)	451, 492, 629, 742
BstV1I	GCAGC	6 cut(s)	170, 302, 310, 313, 331, 697
BstV2I	GAAGAC	2 cut(s)	189, 671
BstX2I	RGATCY	2 cut(s)	304, 623
BstYI	RGATCY	2 cut(s)	304, 623
Bsu36I	CCTNAGG	1 cut(s)	487
BsuRI	GGCC	4 cut(s)	5, 492, 568, 602
BtgI	CCRYGG	2 cut(s)	6, 563
BtsI	GCAGTG	1 cut(s)	421
BtsIMutI	CAGTG	2 cut(s)	363, 421
CaiI	CAGNNNCTG	1 cut(s)	323
Cfr13I	GGNCC	4 cut(s)	353, 455, 567, 601
CseI	GACGC	1 cut(s)	225
Csp6I	GTAC	1 cut(s)	432
CviAII	CATG	3 cut(s)	7, 71, 564
CviQI	GTAC	1 cut(s)	432
DdeI	CTNAG	5 cut(s)	17, 152, 487, 708, 815
DpnI	GATC	4 cut(s)	306, 375, 625, 641
DpnII	GATC	4 cut(s)	304, 373, 623, 639
DraI	TTTAAA	1 cut(s)	243
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	21
Eco130I	CCWWGG	3 cut(s)	6, 330, 563
Eco24I	GRGCYC	1 cut(s)	23
Eco32I	GATATC	2 cut(s)	364, 784
Eco47I	GGWCC	2 cut(s)	353, 455
Eco53kI	GAGCTC	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	502
Eco81I	CCTNAGG	1 cut(s)	487
EcoICRI	GAGCTC	1 cut(s)	21
EcoRII	CCWGG	4 cut(s)	451, 492, 629, 742
EcoRV	GATATC	2 cut(s)	364, 784
EcoT14I	CCWWGG	3 cut(s)	6, 330, 563
EcoT38I	GRGCYC	1 cut(s)	23
ErhI	CCWWGG	3 cut(s)	6, 330, 563
Esp3I	CGTCTC	1 cut(s)	801
FaeI	CATG	3 cut(s)	10, 74, 567
FaiI	YATR	8 cut(s)	8, 72, 409, 411, 539, 565, 620, 835
FatI	CATG	3 cut(s)	6, 70, 563
Fnu4HI	GCNGC	8 cut(s)	159, 191, 291, 324, 327, 345, 575, 686
FriOI	GRGCYC	1 cut(s)	23
Fsp4HI	GCNGC	8 cut(s)	159, 191, 291, 324, 327, 345, 575, 686
FspBI	CTAG	2 cut(s)	437, 554
GluI	GCNGC	8 cut(s)	159, 191, 291, 324, 327, 345, 575, 686
GsuI	CTGGAG	1 cut(s)	369
HaeIII	GGCC	4 cut(s)	5, 492, 568, 602
HapII	CCGG	2 cut(s)	201, 465
HgaI	GACGC	1 cut(s)	225
Hin1II	CATG	3 cut(s)	10, 74, 567
HindIII	AAGCTT	1 cut(s)	142
HpaII	CCGG	2 cut(s)	201, 465
HphI	GGTGA	2 cut(s)	764, 784
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	2 cut(s)	18, 153
Hpy188III	TCNNGA	4 cut(s)	182, 201, 297, 377
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	3 cut(s)	60, 462, 713
HpyCH4III	ACNGT	1 cut(s)	661
HpyCH4IV	ACGT	1 cut(s)	762
HpyCH4V	TGCA	4 cut(s)	65, 290, 388, 419
HpyF10VI	GCNNNNNNNGC	5 cut(s)	102, 155, 323, 574, 599
HpyF3I	CTNAG	5 cut(s)	17, 152, 487, 708, 815
HpySE526I	ACGT	1 cut(s)	762
Hsp92II	CATG	3 cut(s)	10, 74, 567
Kpn2I	TCCGGA	1 cut(s)	200
Kzo9I	GATC	4 cut(s)	304, 373, 623, 639
LmnI	GCTCC	3 cut(s)	444, 544, 565
Lsp1109I	GCAGC	6 cut(s)	170, 302, 310, 313, 331, 697
LweI	GCATC	3 cut(s)	302, 766, 798
MaeI	CTAG	2 cut(s)	437, 554
MaeII	ACGT	1 cut(s)	762
MaeIII	GTNAC	4 cut(s)	131, 702, 711, 763
MalI	GATC	4 cut(s)	306, 375, 625, 641
MboI	GATC	4 cut(s)	304, 373, 623, 639
MboII	GAAGA	6 cut(s)	51, 189, 417, 508, 618, 676
MflI	RGATCY	2 cut(s)	304, 623
MhlI	GDGCHC	2 cut(s)	23, 562
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	401, 480, 608, 755
MluNI	TGGCCA	1 cut(s)	5
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	242, 636
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	2 cut(s)	201, 465
MspR9I	CCNGG	4 cut(s)	453, 494, 631, 744
MvaI	CCWGG	4 cut(s)	453, 494, 631, 744
MwoI	GCNNNNNNNGC	5 cut(s)	102, 155, 323, 574, 599
NcoI	CCATGG	2 cut(s)	6, 563
NdeII	GATC	4 cut(s)	304, 373, 623, 639
NlaIII	CATG	3 cut(s)	10, 74, 567
NlaIV	GGNNCC	2 cut(s)	446, 569
NmuCI	GTSAC	1 cut(s)	131
NspI	RCATGY	1 cut(s)	74
PciI	ACATGT	1 cut(s)	70
PflMI	CCANNNNNTGG	1 cut(s)	749
PkrI	GCNGC	8 cut(s)	160, 192, 292, 325, 328, 346, 576, 687
PscI	ACATGT	1 cut(s)	70
PshAI	GACNNNNGTC	1 cut(s)	733
Psp124BI	GAGCTC	1 cut(s)	23
Psp6I	CCWGG	4 cut(s)	451, 492, 629, 742
PspGI	CCWGG	4 cut(s)	451, 492, 629, 742
PspN4I	GGNNCC	2 cut(s)	446, 569
PspPI	GGNCC	4 cut(s)	353, 455, 567, 601
PstNI	CAGNNNCTG	1 cut(s)	323
PsuI	RGATCY	2 cut(s)	304, 623
PvuII	CAGCTG	1 cut(s)	161
RsaI	GTAC	1 cut(s)	433
RsaNI	GTAC	1 cut(s)	432
SacI	GAGCTC	1 cut(s)	23
SaqAI	TTAA	2 cut(s)	242, 636
SatI	GCNGC	8 cut(s)	159, 191, 291, 324, 327, 345, 575, 686
Sau3AI	GATC	4 cut(s)	304, 373, 623, 639
Sau96I	GGNCC	4 cut(s)	353, 455, 567, 601
ScrFI	CCNGG	4 cut(s)	453, 494, 631, 744
SduI	GDGCHC	2 cut(s)	23, 562
SfaNI	GCATC	3 cut(s)	302, 766, 798
SinI	GGWCC	2 cut(s)	353, 455
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	4 cut(s)	401, 480, 608, 755
SsiI	CCGC	3 cut(s)	191, 575, 787
SspMI	CTAG	2 cut(s)	437, 554
SstI	GAGCTC	1 cut(s)	23
StyD4I	CCNGG	4 cut(s)	451, 492, 629, 742
StyI	CCWWGG	3 cut(s)	6, 330, 563
TaaI	ACNGT	1 cut(s)	661
TaiI	ACGT	1 cut(s)	765
TaqI	TCGA	1 cut(s)	183
TasI	AATT	4 cut(s)	401, 480, 608, 755
TauI	GCSGC	2 cut(s)	193, 577
Tru1I	TTAA	2 cut(s)	242, 636
Tru9I	TTAA	2 cut(s)	242, 636
TscAI	CASTG	2 cut(s)	363, 421
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	6 cut(s)	158, 290, 323, 326, 344, 685
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	1 cut(s)	822
TspGWI	ACGGA	3 cut(s)	98, 520, 723
TspRI	CASTG	2 cut(s)	363, 421
Van91I	CCANNNNNTGG	1 cut(s)	749
VpaK11BI	GGWCC	2 cut(s)	353, 455
XapI	RAATTY	2 cut(s)	608, 755
XceI	RCATGY	1 cut(s)	74
XspI	CTAG	2 cut(s)	437, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.