Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0008761

Physical Location & Seq

Genomic Coordinates Reverse (-)

15822535 .. 15826130

Gene Structure 3596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

ATGCACCTCAGAAGCTCATCAACCCCAGTCACTGAAACATCTTTTTCATGCAACTCTTCTTCTCCAAACTCGCATTCTGCTTCTGGGTTCCCAGAATTTAATCAAGAATCTGAAAGTTTAAGCTTGGAAGGCATTCGGCGAGTTCTGTCTGACGGAAACTTAGAAGGACGGCTAGTCTATAGTTTTTGTGACATGGAAGAGTTTAGGAATTCAGTTGCACCATTAAAGTCTTCATATACACATGATCACAACGCAATGCTGGAAACAGCTCCTTCTTTTAATATATTTAACAAGGCAAGTGAGTTTCATGATGAAATGATTCGGAGGCAAGATTCAAAACAAGAACCACTGGAGAGGTGTATTACAATAGGAGATAGCATAGACGTGACAGGGCTTGGAGGCTTCAGCTTTGAGAAGAAGATGCGATTGATTGAAGAGAAGGGTGAAGAGGAAGTGGAAGGTTTGAAGGCGATCCGGACTTTGCGTGTTGACGAAGAAGTAAGAACACCTGTCAGTCCTCCCATGTACCTTGCAACAGGGCTTGGGGTTGGTGGTGCTGGTTTTGGTTGTGATGCTTGGGATAATGATTTATCTATGGAAAATGTCGATGAGAACGGCAACCCGGAAGAGTATTATAAGCGGATGGTTGATGAATATCCCTGCCACCCTTTGTTCCTTAGGAAGTATGGTCAAGCTTTAGAGGCTAAGGGAGATTTTGATGGAGCTGAAGAGTTCTATTTTCGTGCTACACTAGCGAATCCTTCAGATGGTGAGGCTTTATGTCAGTATGCTGAGCTGGTTTGGCAACTCCGTCATGACCAAGATAAAGCCTTGAGTTACTTTGAACGTGCAGCTCAAGCTAGTCCTCACGACAGCAATGTTCTTGCAGCATATGCTAGTTTTCTTTGGGAAATAGAGGATGACTCGGAAGATGATGAAGCATGTCGTGATGAGATTGAGGTGCAGGATGTCGCTGGCGATAGTGTGCCTGATACGGCAGTGGCTGGCTCAAGGAGTGACAACCCCGAGGAGAATTACAAGATGATGATTGAAGAGAACCCTGACAATGCTTTGTTGCTAAGAAATTATGCTCAGTTCTTGTGGCAGTCCAAAGGAGATCTTCAAGGAGCAGAGGAGCACTATTTGCGGGCAATACTAACTGATCTTGGGGACGGTGAGATCATGGCACAATATGCTACACTGGTGTGGGAACTTCATCATGACAGTAAGAAGGCACTGTCGTACTTTGAGCGAGCTGTTCAAGCTAATCCTGAAGATAGCTATATTCTTGCGGCCTACGCTAATTTCCTCTGGGAACATGAAGAAGATGAGGAGGACAGCGTAACGCAAGCTCACGTCCAAGTGCCTCCTGTACAAGGAGGAGCGGTGAGCGTTGGAAACGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_8

Protein Analysis

469

Amino Acids

52.43

Weight (kDa)

4.39

Isoelectric Point (pI)

63.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04530
fragaria_vesca	FvH4_4g04670 FvH4_4g04670 FvH4_4g04670
malus_domestica	MD13G1221900.v1.1 MD16G1226800.v1.1
prunus_persica	Prupe.1G049000_v2.0.a1 Prupe.1G049000_v2.0.a1
pyrus_communis	pycom16g18990
rosa_chinensis	RchiOBHm_Chr4g0395481
rosa_laevigata	RLG00000009619
rosa_multiflora	Rmu_sc0001951.1_g000004 Rmu_sc0003334.1_g000007 Rmu_sc0011701.1_g000033
rosa_roxburghii	Rroxscaffold_5G00340420
rosa_rugosa	Rorug03G0355800 Rorug03G0355900
rosa_samantha	Rh4AG060500 Rh4AG062000 Rh4BG059400 Rh4CG065100 Rh4DG055400
rosa_wichuraiana	Rw4G005060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	636
AccBSI	CCGCTC	1 cut(s)	1385
AccIII	TCCGGA	1 cut(s)	474
AciI	CCGC	4 cut(s)	640, 1147, 1292, 1385
AclWI	GGATC	1 cut(s)	466
AcsI	RAATTY	2 cut(s)	95, 208
AcuI	CTGAAG	4 cut(s)	388, 747, 747, 1293
AfaI	GTAC	3 cut(s)	527, 1244, 1374
AfiI	CCNNNNNNNGG	2 cut(s)	767, 1376
AgsI	TTSAA	7 cut(s)	336, 434, 466, 845, 1052, 1124, 1262
AhdI	GACNNNNNGTC	1 cut(s)	173
AjiI	CACGTC	2 cut(s)	385, 1357
AjuI	GAANNNNNNNTTGG	2 cut(s)	58, 90
AleI	CACNNNNGTG	1 cut(s)	1204
Alw21I	GWGCWC	1 cut(s)	1140
AlwI	GGATC	1 cut(s)	466
AlwNI	CAGNNNCTG	2 cut(s)	32, 1004
Ama87I	CYCGRG	1 cut(s)	1025
Aor13HI	TCCGGA	1 cut(s)	474
AoxI	GGCC	1 cut(s)	1293
ApeKI	GCWGC	2 cut(s)	851, 887
ApoI	RAATTY	2 cut(s)	95, 208
Asp700I	GAANNNNTTC	2 cut(s)	132, 318
AsuC2I	CCSGG	1 cut(s)	623
AsuHPI	GGTGA	4 cut(s)	455, 782, 1187, 1399
AvaI	CYCGRG	1 cut(s)	1025
AxyI	CCTNAGG	1 cut(s)	677
BaeI	ACNNNNGTAYC	2 cut(s)	984, 1017
BbsI	GAAGAC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	1140
BbvI	GCAGC	2 cut(s)	863, 899
BccI	CCATC	3 cut(s)	637, 713, 761
BceAI	ACGGC	3 cut(s)	185, 631, 1011
BclI	TGATCA	1 cut(s)	244
BcnI	CCSGG	1 cut(s)	623
BfaI	CTAG	4 cut(s)	173, 752, 861, 897
BfmI	CTRYAG	1 cut(s)	178
BglII	AGATCT	1 cut(s)	1117
BisI	GCNGC	3 cut(s)	852, 888, 1293
BlpI	GCTNAGC	1 cut(s)	792
BlsI	GCNGC	3 cut(s)	853, 889, 1294
Bme1390I	CCNGG	1 cut(s)	623
BmeRI	GACNNNNNGTC	1 cut(s)	173
BmeT110I	CYCGRG	1 cut(s)	1025
BmgBI	CACGTC	2 cut(s)	385, 1357
BmiI	GGNNCC	1 cut(s)	89
BmrFI	CCNGG	1 cut(s)	623
BmrI	ACTGGG	1 cut(s)	20
BmsI	GCATC	2 cut(s)	411, 562
BmuI	ACTGGG	1 cut(s)	20
BpiI	GAAGAC	1 cut(s)	222
BplI	GAGNNNNNCTC	2 cut(s)	908, 940
BpmI	CTGGAG	1 cut(s)	371
Bpu10I	CCTNAGC	1 cut(s)	705
Bpu1102I	GCTNAGC	1 cut(s)	792
BpuEI	CTTGAG	3 cut(s)	840, 853, 994
BpuMI	CCSGG	1 cut(s)	623
BsaBI	GATNNNNATC	1 cut(s)	654
BsaJI	CCNNGG	1 cut(s)	1026
BsaWI	WCCGGW	1 cut(s)	474
BsaXI	ACNNNNNCTCC	2 cut(s)	1371, 1401
Bsc4I	CCNNNNNNNGG	2 cut(s)	767, 1376
Bse1I	ACTGG	3 cut(s)	26, 354, 1206
Bse21I	CCTNAGG	1 cut(s)	677
Bse3DI	GCAATG	2 cut(s)	261, 883
Bse8I	GATNNNNATC	1 cut(s)	654
BseAI	TCCGGA	1 cut(s)	474
BseDI	CCNNGG	1 cut(s)	1026
BseGI	GGATG	3 cut(s)	648, 925, 973
BseJI	GATNNNNATC	1 cut(s)	654
BseLI	CCNNNNNNNGG	2 cut(s)	767, 1376
BseMI	GCAATG	2 cut(s)	261, 883
BseMII	CTCAG	3 cut(s)	22, 783, 1106
BseNI	ACTGG	3 cut(s)	26, 354, 1206
BseRI	GAGGAG	4 cut(s)	1043, 1148, 1346, 1395
BseXI	GCAGC	2 cut(s)	863, 899
BsgI	GTGCAG	2 cut(s)	870, 983
BshFI	GGCC	1 cut(s)	1295
BsiHKAI	GWGCWC	1 cut(s)	1140
BsiHKCI	CYCGRG	1 cut(s)	1025
BsiSI	CCGG	2 cut(s)	475, 623
BslFI	GGGAC	1 cut(s)	1184
BslI	CCNNNNNNNGG	2 cut(s)	767, 1376
BsmFI	GGGAC	1 cut(s)	1184
BsmI	GAATGC	2 cut(s)	73, 132
BsnI	GGCC	1 cut(s)	1295
BsoBI	CYCGRG	1 cut(s)	1025
Bsp1286I	GDGCHC	1 cut(s)	1140
Bsp13I	TCCGGA	1 cut(s)	474
Bsp1407I	TGTACA	1 cut(s)	1372
Bsp143I	GATC	5 cut(s)	244, 471, 1117, 1162, 1179
Bsp1720I	GCTNAGC	1 cut(s)	792
BspACI	CCGC	4 cut(s)	640, 1147, 1292, 1385
BspANI	GGCC	1 cut(s)	1295
BspCNI	CTCAG	3 cut(s)	21, 784, 1105
BspEI	TCCGGA	1 cut(s)	474
BspHI	TCATGA	3 cut(s)	307, 814, 1219
BspLI	GGNNCC	1 cut(s)	89
BspPI	GGATC	1 cut(s)	466
BsrBI	CCGCTC	1 cut(s)	1385
BsrDI	GCAATG	2 cut(s)	261, 883
BsrGI	TGTACA	1 cut(s)	1372
BsrI	ACTGG	3 cut(s)	26, 354, 1206
BssECI	CCNNGG	1 cut(s)	1026
BssMI	GATC	5 cut(s)	244, 471, 1117, 1162, 1179
Bst4CI	ACNGT	3 cut(s)	1175, 1226, 1239
Bst6I	CTCTTC	7 cut(s)	61, 192, 429, 441, 621, 723, 1047
BstAPI	GCANNNNNTGC	3 cut(s)	893, 1144, 1193
BstAUI	TGTACA	1 cut(s)	1372
BstC8I	GCNNGC	5 cut(s)	976, 1006, 1149, 1254, 1350
BstDEI	CTNAG	7 cut(s)	8, 160, 677, 705, 792, 1079, 1092
BstENI	CCTNNNNNAGG	1 cut(s)	1374
BstF5I	GGATG	3 cut(s)	648, 925, 973
BstKTI	GATC	5 cut(s)	247, 474, 1120, 1165, 1182
BstMBI	GATC	5 cut(s)	244, 471, 1117, 1162, 1179
BstNSI	RCATGY	1 cut(s)	945
BstSCI	CCNGG	1 cut(s)	621
BstSFI	CTRYAG	1 cut(s)	178
BstV1I	GCAGC	2 cut(s)	863, 899
BstV2I	GAAGAC	1 cut(s)	222
BstX2I	RGATCY	1 cut(s)	1117
BstYI	RGATCY	1 cut(s)	1117
Bsu36I	CCTNAGG	1 cut(s)	677
BsuRI	GGCC	1 cut(s)	1295
BtrI	CACGTC	2 cut(s)	385, 1357
BtsCI	GGATG	3 cut(s)	648, 925, 973
BtsI	GCAGTG	1 cut(s)	1005
BtsIMutI	CAGTG	5 cut(s)	30, 347, 1005, 1199, 1235
Cac8I	GCNNGC	5 cut(s)	976, 1006, 1149, 1254, 1350
CaiI	CAGNNNCTG	2 cut(s)	32, 1004
CciI	TCATGA	3 cut(s)	307, 814, 1219
Csp6I	GTAC	3 cut(s)	526, 1243, 1373
CviQI	GTAC	3 cut(s)	526, 1243, 1373
DdeI	CTNAG	7 cut(s)	8, 160, 677, 705, 792, 1079, 1092
DpnI	GATC	5 cut(s)	246, 473, 1119, 1164, 1181
DpnII	GATC	5 cut(s)	244, 471, 1117, 1162, 1179
DriI	GACNNNNNGTC	1 cut(s)	173
Eam1104I	CTCTTC	7 cut(s)	61, 192, 429, 441, 621, 723, 1047
Eam1105I	GACNNNNNGTC	1 cut(s)	173
EarI	CTCTTC	7 cut(s)	61, 192, 429, 441, 621, 723, 1047
Eco57I	CTGAAG	4 cut(s)	388, 747, 747, 1293
Eco81I	CCTNAGG	1 cut(s)	677
Eco88I	CYCGRG	1 cut(s)	1025
EcoNI	CCTNNNNNAGG	1 cut(s)	1374
EcoRI	GAATTC	1 cut(s)	208
FalI	AAGNNNNNCTT	2 cut(s)	1104, 1136
FaqI	GGGAC	1 cut(s)	1184
FauI	CCCGC	1 cut(s)	1140
FauNDI	CATATG	1 cut(s)	892
FbaI	TGATCA	1 cut(s)	244
Fnu4HI	GCNGC	3 cut(s)	852, 888, 1293
FokI	GGATG	3 cut(s)	655, 932, 980
Fsp4HI	GCNGC	3 cut(s)	852, 888, 1293
FspBI	CTAG	4 cut(s)	173, 752, 861, 897
GluI	GCNGC	3 cut(s)	852, 888, 1293
GsuI	CTGGAG	1 cut(s)	371
HaeIII	GGCC	1 cut(s)	1295
HapII	CCGG	2 cut(s)	475, 623
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HindIII	AAGCTT	2 cut(s)	121, 693
HinfI	GANTC	5 cut(s)	107, 319, 332, 757, 923
HpaII	CCGG	2 cut(s)	475, 623
HphI	GGTGA	4 cut(s)	455, 782, 1187, 1399
Hpy166II	GTNNAC	1 cut(s)	490
Hpy188I	TCNGA	6 cut(s)	11, 112, 151, 324, 766, 928
Hpy188III	TCNNGA	8 cut(s)	104, 308, 475, 815, 869, 947, 1220, 1271
Hpy8I	GTNNAC	1 cut(s)	490
HpyAV	CCTTC	8 cut(s)	122, 158, 282, 433, 452, 460, 771, 1225
HpyCH4III	ACNGT	3 cut(s)	1175, 1226, 1239
HpyCH4IV	ACGT	3 cut(s)	384, 847, 1356
HpyCH4V	TGCA	7 cut(s)	4, 51, 218, 533, 851, 887, 964
HpyF3I	CTNAG	7 cut(s)	8, 160, 677, 705, 792, 1079, 1092
HpySE526I	ACGT	3 cut(s)	384, 847, 1356
Kpn2I	TCCGGA	1 cut(s)	474
Ksp22I	TGATCA	1 cut(s)	244
Kzo9I	GATC	5 cut(s)	244, 471, 1117, 1162, 1179
LmnI	GCTCC	5 cut(s)	274, 722, 1127, 1135, 1382
Lsp1109I	GCAGC	2 cut(s)	863, 899
LweI	GCATC	2 cut(s)	411, 562
MaeI	CTAG	4 cut(s)	173, 752, 861, 897
MaeII	ACGT	3 cut(s)	384, 847, 1356
MaeIII	GTNAC	6 cut(s)	28, 188, 385, 836, 1016, 1342
MalI	GATC	5 cut(s)	246, 473, 1119, 1164, 1181
MbiI	CCGCTC	1 cut(s)	1385
MboI	GATC	5 cut(s)	244, 471, 1117, 1162, 1179
MflI	RGATCY	1 cut(s)	1117
MhlI	GDGCHC	1 cut(s)	1140
MluCI	AATT	5 cut(s)	95, 208, 1033, 1084, 1303
MlyI	GAGTC	1 cut(s)	917
MmeI	TCCRAC	1 cut(s)	1375
MroI	TCCGGA	1 cut(s)	474
MroXI	GAANNNNTTC	2 cut(s)	132, 318
MseI	TTAA	5 cut(s)	99, 119, 224, 279, 288
MslI	CAYNNNNRTG	2 cut(s)	383, 1204
MspI	CCGG	2 cut(s)	475, 623
MspR9I	CCNGG	1 cut(s)	623
Mva1269I	GAATGC	2 cut(s)	73, 132
NciI	CCSGG	1 cut(s)	623
NdeI	CATATG	1 cut(s)	892
NdeII	GATC	5 cut(s)	244, 471, 1117, 1162, 1179
NlaIV	GGNNCC	1 cut(s)	89
NmuCI	GTSAC	4 cut(s)	28, 188, 385, 1016
NspI	RCATGY	1 cut(s)	945
OliI	CACNNNNGTG	1 cut(s)	1204
PagI	TCATGA	3 cut(s)	307, 814, 1219
PctI	GAATGC	2 cut(s)	73, 132
PdmI	GAANNNNTTC	2 cut(s)	132, 318
PfeI	GAWTC	4 cut(s)	107, 319, 332, 757
PkrI	GCNGC	3 cut(s)	853, 889, 1294
PleI	GAGTC	1 cut(s)	917
PpsI	GAGTC	1 cut(s)	917
PsiI	TTATAA	1 cut(s)	636
PspN4I	GGNNCC	1 cut(s)	89
PstNI	CAGNNNCTG	2 cut(s)	32, 1004
PsuI	RGATCY	1 cut(s)	1117
RsaI	GTAC	3 cut(s)	527, 1244, 1374
RsaNI	GTAC	3 cut(s)	526, 1243, 1373
RseI	CAYNNNNRTG	2 cut(s)	383, 1204
SaqAI	TTAA	5 cut(s)	99, 119, 224, 279, 288
SatI	GCNGC	3 cut(s)	852, 888, 1293
Sau3AI	GATC	5 cut(s)	244, 471, 1117, 1162, 1179
SchI	GAGTC	1 cut(s)	917
ScrFI	CCNGG	1 cut(s)	623
SduI	GDGCHC	1 cut(s)	1140
SfaNI	GCATC	2 cut(s)	411, 562
SfcI	CTRYAG	1 cut(s)	178
SmiMI	CAYNNNNRTG	2 cut(s)	383, 1204
SmlI	CTYRAG	3 cut(s)	832, 855, 1009
SmoI	CTYRAG	3 cut(s)	832, 855, 1009
Sse9I	AATT	5 cut(s)	95, 208, 1033, 1084, 1303
SsiI	CCGC	4 cut(s)	640, 1147, 1292, 1385
SspMI	CTAG	4 cut(s)	173, 752, 861, 897
StyD4I	CCNGG	1 cut(s)	621
TaaI	ACNGT	3 cut(s)	1175, 1226, 1239
TaiI	ACGT	3 cut(s)	387, 850, 1359
TaqI	TCGA	1 cut(s)	606
TasI	AATT	5 cut(s)	95, 208, 1033, 1084, 1303
TatI	WGTACW	1 cut(s)	1372
TauI	GCSGC	1 cut(s)	1295
TfiI	GAWTC	4 cut(s)	107, 319, 332, 757
Tru1I	TTAA	5 cut(s)	99, 119, 224, 279, 288
Tru9I	TTAA	5 cut(s)	99, 119, 224, 279, 288
TscAI	CASTG	5 cut(s)	37, 354, 1005, 1206, 1242
TseFI	GTSAC	4 cut(s)	28, 188, 385, 1016
TseI	GCWGC	2 cut(s)	851, 887
Tsp45I	GTSAC	4 cut(s)	28, 188, 385, 1016
TspDTI	ATGAA	8 cut(s)	36, 222, 296, 327, 666, 951, 1205, 1335
TspGWI	ACGGA	2 cut(s)	168, 800
TspRI	CASTG	5 cut(s)	37, 354, 1005, 1206, 1242
XagI	CCTNNNNNAGG	1 cut(s)	1374
XapI	RAATTY	2 cut(s)	95, 208
XceI	RCATGY	1 cut(s)	945
XmnI	GAANNNNTTC	2 cut(s)	132, 318
XspI	CTAG	4 cut(s)	173, 752, 861, 897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.