pycom16g22350

SPT2 chromatin protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
22002769 .. 22003116
348 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 237 bp
ATGCGGGGATATGATAGAGATGATTATGGTCAGTCAGGCAACGAATATGAGGATTATGAGGACGATGAGGATGGTGAAGAGTGTGAAGAGGAAGAGGAAGATCCAAAGCCTACCAAGGAAGCATTGGCATACCTTGAGTTGAGACAACGCTTGAAAGAACAATTACGAAAGAAGAAGAGTGGTTCTTCTTTGGCCAACTCCAGTAATAAAAAGAAGGAGCTCCCATATGACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

79

Amino Acids

9.2

Weight (kDa)

4.54

Isoelectric Point (pI)

65.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 4
AclWI GGATC 1 cut(s) 95
AcoI YGGCCR 1 cut(s) 192
AgsI TTSAA 1 cut(s) 154
AluBI AGCT 1 cut(s) 220
AluI AGCT 1 cut(s) 220
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 1 cut(s) 136
AlwI GGATC 1 cut(s) 95
AoxI GGCC 1 cut(s) 192
AsuHPI GGTGA 1 cut(s) 86
BalI TGGCCA 1 cut(s) 194
BanII GRGCYC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 222
BccI CCATC 1 cut(s) 65
BcoDI GTCTC 1 cut(s) 136
BpmI CTGGAG 1 cut(s) 184
BpuEI CTTGAG 1 cut(s) 155
BsaJI CCNNGG 1 cut(s) 114
Bse1I ACTGG 1 cut(s) 201
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 1 cut(s) 76
BseNI ACTGG 1 cut(s) 201
BshFI GGCC 1 cut(s) 194
BsiHKAI GWGCWC 1 cut(s) 222
BsmAI GTCTC 1 cut(s) 136
BsnI GGCC 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 1 cut(s) 100
BspACI CCGC 1 cut(s) 4
BspANI GGCC 1 cut(s) 194
BspPI GGATC 1 cut(s) 95
BsrI ACTGG 1 cut(s) 201
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 1 cut(s) 100
BssT1I CCWWGG 1 cut(s) 114
Bst6I CTCTTC 4 cut(s) 72, 81, 87, 170
BstF5I GGATG 1 cut(s) 76
BstKTI GATC 1 cut(s) 103
BstMAI GTCTC 1 cut(s) 136
BstMBI GATC 1 cut(s) 100
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BsuRI GGCC 1 cut(s) 194
BtsCI GGATG 1 cut(s) 76
CviJI RGCY 3 cut(s) 109, 194, 220
CviKI_1 RGCY 3 cut(s) 109, 194, 220
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
EaeI YGGCCR 1 cut(s) 192
Eam1104I CTCTTC 4 cut(s) 72, 81, 87, 170
EarI CTCTTC 4 cut(s) 72, 81, 87, 170
Ecl136II GAGCTC 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 114
Eco24I GRGCYC 1 cut(s) 222
Eco53kI GAGCTC 1 cut(s) 220
EcoICRI GAGCTC 1 cut(s) 220
EcoT14I CCWWGG 1 cut(s) 114
EcoT38I GRGCYC 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 114
FaiI YATR 7 cut(s) 12, 27, 48, 57, 130, 226, 228
FauNDI CATATG 1 cut(s) 226
FokI GGATG 1 cut(s) 83
FriOI GRGCYC 1 cut(s) 222
GsuI CTGGAG 1 cut(s) 184
HaeIII GGCC 1 cut(s) 194
HphI GGTGA 1 cut(s) 86
HpyAV CCTTC 1 cut(s) 208
Kzo9I GATC 1 cut(s) 100
LmnI GCTCC 2 cut(s) 217, 225
LpnPI CCDG 2 cut(s) 21, 214
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 7 cut(s) 89, 98, 104, 110, 177, 184, 187
MflI RGATCY 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 222
MlsI TGGCCA 1 cut(s) 194
MluCI AATT 1 cut(s) 161
MluNI TGGCCA 1 cut(s) 194
MnlI CCTC 5 cut(s) 43, 52, 61, 82, 88
Mox20I TGGCCA 1 cut(s) 194
MscI TGGCCA 1 cut(s) 194
Msp20I TGGCCA 1 cut(s) 194
NdeI CATATG 1 cut(s) 226
NdeII GATC 1 cut(s) 100
Psp124BI GAGCTC 1 cut(s) 222
PsuI RGATCY 1 cut(s) 100
SacI GAGCTC 1 cut(s) 222
Sau3AI GATC 1 cut(s) 100
SduI GDGCHC 1 cut(s) 222
SetI ASST 2 cut(s) 135, 222
SgeI CNNG 6 cut(s) 17, 48, 127, 146, 163, 213
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 1 cut(s) 161
SsiI CCGC 1 cut(s) 4
SstI GAGCTC 1 cut(s) 222
StyI CCWWGG 1 cut(s) 114
TasI AATT 1 cut(s) 161
XcmI CCANNNNNNNNNTGG 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.