Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0008726

Physical Location & Seq

Genomic Coordinates Forward (+)

25059011 .. 25060509

Gene Structure 1499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGATTTCAGGTGTTCCCCATCTATGCGGTAAGTACCTGATGGCAGACTTACCAGTCTATATGCGTGCTTGCTTGCACACTGGAAAACTTGCCGCCTTGGCAATTTTGGTCTCTGGAGGAATTGTATTGCAAATTTTGGCATGTGCCTTGTACAATAATTGGTGGCCAATGCTAACTGTAATAATGTATGTGCTCCTTCCCATGCCATTGCTGTTCTTTGTGGGATCCGATTCTTCAATATTTTCAGAATCTGAAAATGGCTGGGTAAATGCAACCAAGTTCCTGACTGGAGCTTCAGCTATTGGAAGCATTGCAATCCCTGCAATCTTAAAACATGCTGGTGTTATTGGTTGGGGAGCCTTGGCAATGGAGCTCTCATCCTTTTTCGTATTTGTACTGGCAATAATGTGTTACATTCGGACGAGTGATGGTGATGACAGCTACAGTATCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0006810 GO:0007034 GO:0008150 GO:0012505 GO:0016192 GO:0016197 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0032879 GO:0032880 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045324 GO:0046907 GO:0048519 GO:0050789 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060341 GO:0065007 GO:0071985 GO:0097708 GO:1903827 GO:1903828 GO:2000008 GO:2000009

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps55

Protein Analysis

152

Amino Acids

16.26

Weight (kDa)

5.78

Isoelectric Point (pI)

36.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps55	PF04133	31 - 144	4e-34	Vacuolar protein sorting 55

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32410 AT1G32410 AT1G32410 AT1G32410 AT1G32410
fragaria_vesca	FvH4_5g21150 FvH4_5g21150
malus_domestica	MD06G1040700.v1.1 MD16G1269000.v1.1
prunus_persica	Prupe.5G047000_v2.0.a1 Prupe.5G047000_v2.0.a1
pyrus_communis	pycom06g03390 pycom16g23800
rosa_chinensis	RchiOBHm_Chr7g0208281
rosa_laevigata	RLG00000003233
rosa_multiflora	Rmu_sc0000841.1_g000021 Rmu_sc0007869.1_g000023 Rmu_sc0032312.1_g000001
rosa_roxburghii	Rroxscaffold_3G00250620
rosa_samantha	Rh7AG237000 Rh7CG252900 Rh7DG243000
rosa_wichuraiana	Rw7G020220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	53
AciI	CCGC	2 cut(s)	27, 93
AclWI	GGATC	2 cut(s)	219, 232
AcoI	YGGCCR	1 cut(s)	164
AcsI	RAATTY	1 cut(s)	132
AcuI	CTGAAG	1 cut(s)	279
AfaI	GTAC	3 cut(s)	35, 152, 396
AgsI	TTSAA	1 cut(s)	237
AluBI	AGCT	4 cut(s)	293, 299, 373, 441
AluI	AGCT	4 cut(s)	293, 299, 373, 441
Alw21I	GWGCWC	2 cut(s)	195, 375
Alw26I	GTCTC	1 cut(s)	115
AlwI	GGATC	2 cut(s)	219, 232
AlwNI	CAGNNNCTG	1 cut(s)	251
AoxI	GGCC	1 cut(s)	164
ApoI	RAATTY	1 cut(s)	132
AsuHPI	GGTGA	1 cut(s)	443
BalI	TGGCCA	1 cut(s)	166
BamHI	GGATCC	1 cut(s)	224
BanII	GRGCYC	1 cut(s)	375
Bbv12I	GWGCWC	2 cut(s)	195, 375
BccI	CCATC	3 cut(s)	27, 34, 422
BcoDI	GTCTC	1 cut(s)	115
BfmI	CTRYAG	1 cut(s)	442
BglI	GCCNNNNNGGC	1 cut(s)	98
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
BmiI	GGNNCC	2 cut(s)	226, 358
BpmI	CTGGAG	2 cut(s)	135, 309
BsaI	GGTCTC	1 cut(s)	115
BsaJI	CCNNGG	2 cut(s)	96, 360
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bse1I	ACTGG	4 cut(s)	53, 85, 292, 402
Bse3DI	GCAATG	3 cut(s)	206, 309, 372
BseDI	CCNNGG	2 cut(s)	96, 360
BseGI	GGATG	1 cut(s)	377
BseMI	GCAATG	3 cut(s)	206, 309, 372
BseNI	ACTGG	4 cut(s)	53, 85, 292, 402
BseYI	CCCAGC	1 cut(s)	261
BshFI	GGCC	1 cut(s)	166
BsiHKAI	GWGCWC	2 cut(s)	195, 375
BsmAI	GTCTC	1 cut(s)	115
BsnI	GGCC	1 cut(s)	166
Bso31I	GGTCTC	1 cut(s)	115
Bsp1286I	GDGCHC	2 cut(s)	195, 375
Bsp1407I	TGTACA	1 cut(s)	150
Bsp143I	GATC	1 cut(s)	224
BspACI	CCGC	2 cut(s)	27, 93
BspANI	GGCC	1 cut(s)	166
BspLI	GGNNCC	2 cut(s)	226, 358
BspPI	GGATC	2 cut(s)	219, 232
BspTNI	GGTCTC	1 cut(s)	115
BsrDI	GCAATG	3 cut(s)	206, 309, 372
BsrGI	TGTACA	1 cut(s)	150
BsrI	ACTGG	4 cut(s)	53, 85, 292, 402
BssECI	CCNNGG	2 cut(s)	96, 360
BssMI	GATC	1 cut(s)	224
BssT1I	CCWWGG	2 cut(s)	96, 360
Bst4CI	ACNGT	2 cut(s)	178, 446
BstAPI	GCANNNNNTGC	1 cut(s)	320
BstAUI	TGTACA	1 cut(s)	150
BstC8I	GCNNGC	3 cut(s)	66, 70, 74
BstF5I	GGATG	1 cut(s)	377
BstKTI	GATC	1 cut(s)	227
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	224
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 320
BstNSI	RCATGY	2 cut(s)	144, 338
BstSFI	CTRYAG	1 cut(s)	442
BstX2I	RGATCY	1 cut(s)	224
BstYI	RGATCY	1 cut(s)	224
BsuRI	GGCC	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	377
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	3 cut(s)	66, 70, 74
CaiI	CAGNNNCTG	1 cut(s)	251
Csp6I	GTAC	3 cut(s)	34, 151, 395
CviAII	CATG	3 cut(s)	141, 202, 335
CviJI	RGCY	7 cut(s)	166, 261, 293, 299, 359, 373, 441
CviKI_1	RGCY	7 cut(s)	166, 261, 293, 299, 359, 373, 441
CviQI	GTAC	3 cut(s)	34, 151, 395
DpnI	GATC	1 cut(s)	226
DpnII	GATC	1 cut(s)	224
DrdI	GACNNNNNNGTC	1 cut(s)	53
DseDI	GACNNNNNNGTC	1 cut(s)	53
EaeI	YGGCCR	1 cut(s)	164
Ecl136II	GAGCTC	1 cut(s)	373
Eco130I	CCWWGG	2 cut(s)	96, 360
Eco24I	GRGCYC	1 cut(s)	375
Eco31I	GGTCTC	1 cut(s)	115
Eco53kI	GAGCTC	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	279
EcoICRI	GAGCTC	1 cut(s)	373
EcoT14I	CCWWGG	2 cut(s)	96, 360
EcoT38I	GRGCYC	1 cut(s)	375
ErhI	CCWWGG	2 cut(s)	96, 360
FaeI	CATG	3 cut(s)	144, 205, 338
FaiI	YATR	7 cut(s)	25, 60, 62, 142, 189, 203, 336
FatI	CATG	3 cut(s)	140, 201, 334
Fnu4HI	GCNGC	1 cut(s)	93
FokI	GGATG	1 cut(s)	364
FriOI	GRGCYC	1 cut(s)	375
Fsp4HI	GCNGC	1 cut(s)	93
GluI	GCNGC	1 cut(s)	93
GsaI	CCCAGC	1 cut(s)	265
GsuI	CTGGAG	2 cut(s)	135, 309
HaeIII	GGCC	1 cut(s)	166
Hin1II	CATG	3 cut(s)	144, 205, 338
HinfI	GANTC	2 cut(s)	230, 248
HphI	GGTGA	1 cut(s)	443
Hpy188I	TCNGA	5 cut(s)	229, 247, 253, 420, 455
Hpy188III	TCNNGA	2 cut(s)	114, 283
HpyAV	CCTTC	1 cut(s)	206
HpyCH4III	ACNGT	2 cut(s)	178, 446
HpyCH4V	TGCA	5 cut(s)	76, 130, 272, 314, 323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 320
Hsp92II	CATG	3 cut(s)	144, 205, 338
Kzo9I	GATC	1 cut(s)	224
LmnI	GCTCC	4 cut(s)	198, 290, 356, 370
MaeIII	GTNAC	1 cut(s)	410
MalI	GATC	1 cut(s)	226
MboI	GATC	1 cut(s)	224
MboII	GAAGA	1 cut(s)	225
MflI	RGATCY	1 cut(s)	224
MhlI	GDGCHC	2 cut(s)	195, 375
MlsI	TGGCCA	1 cut(s)	166
MluCI	AATT	4 cut(s)	102, 120, 132, 157
MluNI	TGGCCA	1 cut(s)	166
MnlI	CCTC	1 cut(s)	110
Mox20I	TGGCCA	1 cut(s)	166
MscI	TGGCCA	1 cut(s)	166
MseI	TTAA	1 cut(s)	329
MslI	CAYNNNNRTG	1 cut(s)	339
Msp20I	TGGCCA	1 cut(s)	166
MwoI	GCNNNNNNNGC	2 cut(s)	98, 320
NdeII	GATC	1 cut(s)	224
NlaIII	CATG	3 cut(s)	144, 205, 338
NlaIV	GGNNCC	2 cut(s)	226, 358
NspI	RCATGY	2 cut(s)	144, 338
PfeI	GAWTC	2 cut(s)	230, 248
PkrI	GCNGC	1 cut(s)	94
Psp124BI	GAGCTC	1 cut(s)	375
PspFI	CCCAGC	1 cut(s)	261
PspN4I	GGNNCC	2 cut(s)	226, 358
PstNI	CAGNNNCTG	1 cut(s)	251
PsuI	RGATCY	1 cut(s)	224
RsaI	GTAC	3 cut(s)	35, 152, 396
RsaNI	GTAC	3 cut(s)	34, 151, 395
RseI	CAYNNNNRTG	1 cut(s)	339
SacI	GAGCTC	1 cut(s)	375
SaqAI	TTAA	1 cut(s)	329
SatI	GCNGC	1 cut(s)	93
Sau3AI	GATC	1 cut(s)	224
SduI	GDGCHC	2 cut(s)	195, 375
SetI	ASST	6 cut(s)	13, 39, 295, 301, 375, 443
SfcI	CTRYAG	1 cut(s)	442
SmiMI	CAYNNNNRTG	1 cut(s)	339
Sse9I	AATT	4 cut(s)	102, 120, 132, 157
SsiI	CCGC	2 cut(s)	27, 93
SspI	AATATT	1 cut(s)	240
SstI	GAGCTC	1 cut(s)	375
StyI	CCWWGG	2 cut(s)	96, 360
TaaI	ACNGT	2 cut(s)	178, 446
TasI	AATT	4 cut(s)	102, 120, 132, 157
TatI	WGTACW	2 cut(s)	150, 394
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	2 cut(s)	230, 248
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TscAI	CASTG	1 cut(s)	85
TspRI	CASTG	1 cut(s)	85
XapI	RAATTY	1 cut(s)	132
XceI	RCATGY	2 cut(s)	144, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.