Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0008586

Physical Location & Seq

Genomic Coordinates Reverse (-)

25323834 .. 25325033

Gene Structure 1200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGTCCAAAGCTAATCCTAGAATCAATCAATCTCCTTACCTTTTTCCCTGTTTGTGTATTAATATTAGCACAATGGTTAGATCCCCTTGTTGTGATGAAGAGAACAGTTTGAAGAAAGGTCCCTGGACAATGGACGAAGATGCGAAATTGACGGATTATATTAGAAGAAATGGTCATGGAAGCTGGAGAGCTCTCCCCAAGCTTGCTGGCCTCAACAGGTGTGGCAAGAGTTGCAGATTAAGGTGGACAAATTACCTGAGGCCTGATATTAAGAGAGGAAAGTTCTCCGAAGAGGAAGAACGAGTTATCATCAATCTTCATTCAGTTCTTGGAAACAAGTGGTCAAAGATTGCAACTCATCTACCAGGGAGAACGGATAACGAAATCAAGAATTACTGGAACACCCACCTGAGAAAGAAGCTCCTGCACATGGGGATTGATCCAAACACCCACAAGCCAAGGACTGACCTAAATCACCTCCTCGACCTTTCATGGTTGGTCAGAGCAGCAAGTGTTGGCAACTCGAACATGATGACTAGTCCTTGGGACAATGCCATGAGCCTGCAAGCAGCAGCGGGTGCTGCCCAACTTGCCAAAATGCAGTTACTTCAATGTTTATACATGATACCAGTCGTGAGCACAAGTAATAGTAGTGTTCCTCCTAAAAATTATAATGCAGACGTGATGAACACTACTACTAATAGTCATTTTGGTTCTCACAGTCTTCATCTGTTTGGAGGAGGGAATATGAGTGGTGCAAGTACCATACTAAGTGGTCAGAAATGGAACCAGCAGGCTGATGAAGTCGACAGCTTCCACGCGATTTCTAACTTGTTTGAAGGATTTCAAGGTGGGTTTGGTGCACAAGGAGGTATTAATAGCAATAGTACTGATCAGGAGAACATGAGCAGTAGTTGCCATGGTGATATATATGTCCAGACCTGGAACCAACCACCTCCTGCATTTTCATCGGCAGCAGTATCTCCGGGGACTTCTTCCACGGCCATCTTTGACGCTTGGGAGAAACTCATGGATGATGAAACAAGTGAATCCTACTGGAAAGATATTCTAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

359

Amino Acids

39.82

Weight (kDa)

7.18

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	39 - 86	2e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	42 - 101	7e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	92 - 137	1.1e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	95 - 140	5.5e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02940 AT3G02940 AT3G02940 AT5G16770 AT5G16770 AT5G16770 AT5G16770
fragaria_vesca	FvH4_5g22510
malus_domestica	MD06G1037300.v1.1 MD16G1271400.v1.1
prunus_persica	Prupe.5G031700_v2.0.a1
pyrus_communis	pycom06g03080 pycom16g24100
rosa_chinensis	RchiOBHm_Chr7g0210281
rosa_laevigata	RLG00000003052
rosa_multiflora	Rmu_sc0003639.1_g000007 Rmu_sc0007188.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248460
rosa_rugosa	Rorug07G0120400
rosa_samantha	Rh7AG253300 Rh7CG270200 Rh7DG260900
rosa_wichuraiana	Rw7G021590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	672
AccI	GTMKAC	1 cut(s)	807
AccII	CGCG	1 cut(s)	821
AciI	CCGC	1 cut(s)	575
AclWI	GGATC	2 cut(s)	75, 434
AcoI	YGGCCR	1 cut(s)	1002
AfaI	GTAC	2 cut(s)	763, 889
AfiI	CCNNNNNNNGG	1 cut(s)	430
AgsI	TTSAA	4 cut(s)	112, 611, 839, 848
AhlI	ACTAGT	1 cut(s)	536
AjiI	CACGTC	1 cut(s)	682
AjnI	CCWGG	3 cut(s)	122, 364, 941
AluBI	AGCT	6 cut(s)	11, 183, 191, 202, 421, 813
AluI	AGCT	6 cut(s)	11, 183, 191, 202, 421, 813
Alw21I	GWGCWC	3 cut(s)	193, 641, 865
Alw44I	GTGCAC	1 cut(s)	861
AlwI	GGATC	2 cut(s)	75, 434
AoxI	GGCC	3 cut(s)	208, 260, 1002
ApaLI	GTGCAC	1 cut(s)	861
ApeKI	GCWGC	5 cut(s)	506, 569, 572, 581, 974
AseI	ATTAAT	2 cut(s)	60, 876
Asp700I	GAANNNNTTC	1 cut(s)	843
AspS9I	GGNCC	1 cut(s)	119
AsuC2I	CCSGG	1 cut(s)	987
AsuHPI	GGTGA	2 cut(s)	467, 935
AvaII	GGWCC	1 cut(s)	119
AxyI	CCTNAGG	1 cut(s)	257
BaeGI	GKGCMC	1 cut(s)	865
BanII	GRGCYC	1 cut(s)	193
BbsI	GAAGAC	1 cut(s)	716
Bbv12I	GWGCWC	3 cut(s)	193, 641, 865
BbvI	GCAGC	5 cut(s)	518, 568, 581, 584, 986
BccI	CCATC	1 cut(s)	1013
BceAI	ACGGC	1 cut(s)	1017
BcgI	CGANNNNNNTGC	2 cut(s)	951, 985
BciT130I	CCWGG	3 cut(s)	124, 366, 943
BclI	TGATCA	1 cut(s)	892
BcnI	CCSGG	1 cut(s)	987
BcuI	ACTAGT	1 cut(s)	536
BfaI	CTAG	3 cut(s)	18, 537, 1070
BisI	GCNGC	5 cut(s)	507, 570, 573, 582, 975
BlsI	GCNGC	5 cut(s)	508, 571, 574, 583, 976
BmcAI	AGTACT	1 cut(s)	889
Bme1390I	CCNGG	4 cut(s)	124, 366, 943, 987
Bme18I	GGWCC	1 cut(s)	119
BmgBI	CACGTC	1 cut(s)	682
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	3 cut(s)	121, 788, 947
BmrFI	CCNGG	4 cut(s)	124, 366, 943, 987
BmsI	GCATC	1 cut(s)	130
BpiI	GAAGAC	1 cut(s)	716
BpmI	CTGGAG	1 cut(s)	205
BpuMI	CCSGG	1 cut(s)	987
BsaJI	CCNNGG	7 cut(s)	122, 365, 458, 542, 919, 986, 999
Bsc4I	CCNNNNNNNGG	1 cut(s)	430
Bse1I	ACTGG	3 cut(s)	401, 629, 1061
Bse21I	CCTNAGG	1 cut(s)	257
BseBI	CCWGG	3 cut(s)	124, 366, 943
BseDI	CCNNGG	7 cut(s)	122, 365, 458, 542, 919, 986, 999
BseGI	GGATG	1 cut(s)	1039
BseLI	CCNNNNNNNGG	1 cut(s)	430
BseMII	CTCAG	2 cut(s)	248, 401
BseNI	ACTGG	3 cut(s)	401, 629, 1061
BseRI	GAGGAG	2 cut(s)	470, 753
BseSI	GKGCMC	1 cut(s)	865
BseXI	GCAGC	5 cut(s)	518, 568, 581, 584, 986
BsgI	GTGCAG	1 cut(s)	410
Bsh1236I	CGCG	1 cut(s)	821
BshFI	GGCC	3 cut(s)	210, 262, 1004
BsiHKAI	GWGCWC	3 cut(s)	193, 641, 865
BsiSI	CCGG	1 cut(s)	986
BslFI	GGGAC	3 cut(s)	105, 560, 1003
BslI	CCNNNNNNNGG	1 cut(s)	430
BsmFI	GGGAC	3 cut(s)	105, 560, 1003
BsnI	GGCC	3 cut(s)	210, 262, 1004
Bsp1286I	GDGCHC	3 cut(s)	193, 641, 865
Bsp143I	GATC	3 cut(s)	80, 439, 892
Bsp19I	CCATGG	1 cut(s)	919
BspACI	CCGC	1 cut(s)	575
BspANI	GGCC	3 cut(s)	210, 262, 1004
BspCNI	CTCAG	2 cut(s)	249, 402
BspFNI	CGCG	1 cut(s)	821
BspLI	GGNNCC	3 cut(s)	121, 788, 947
BspPI	GGATC	2 cut(s)	75, 434
BsrI	ACTGG	3 cut(s)	401, 629, 1061
BssECI	CCNNGG	7 cut(s)	122, 365, 458, 542, 919, 986, 999
BssMI	GATC	3 cut(s)	80, 439, 892
BssT1I	CCWWGG	3 cut(s)	458, 542, 919
Bst2UI	CCWGG	3 cut(s)	124, 366, 943
Bst4CI	ACNGT	2 cut(s)	107, 722
Bst6I	CTCTTC	2 cut(s)	93, 285
BstAPI	GCANNNNNTGC	3 cut(s)	231, 578, 915
BstC8I	GCNNGC	5 cut(s)	204, 208, 563, 567, 795
BstDEI	CTNAG	3 cut(s)	257, 410, 770
BstDSI	CCRYGG	2 cut(s)	919, 999
BstF5I	GGATG	1 cut(s)	1039
BstFNI	CGCG	1 cut(s)	821
BstKTI	GATC	3 cut(s)	83, 442, 895
BstMBI	GATC	3 cut(s)	80, 439, 892
BstMWI	GCNNNNNNNGC	5 cut(s)	231, 578, 581, 590, 915
BstNI	CCWGG	3 cut(s)	124, 366, 943
BstSCI	CCNGG	4 cut(s)	122, 364, 941, 985
BstSLI	GKGCMC	1 cut(s)	865
BstUI	CGCG	1 cut(s)	821
BstV1I	GCAGC	5 cut(s)	518, 568, 581, 584, 986
BstV2I	GAAGAC	1 cut(s)	716
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
Bsu36I	CCTNAGG	1 cut(s)	257
BsuRI	GGCC	3 cut(s)	210, 262, 1004
BtgI	CCRYGG	2 cut(s)	919, 999
BtrI	CACGTC	1 cut(s)	682
BtsCI	GGATG	1 cut(s)	1039
Cac8I	GCNNGC	5 cut(s)	204, 208, 563, 567, 795
Cfr13I	GGNCC	1 cut(s)	119
CseI	GACGC	1 cut(s)	1022
Csp6I	GTAC	2 cut(s)	762, 888
CspCI	CAANNNNNGTGG	2 cut(s)	202, 237
CviAII	CATG	9 cut(s)	176, 430, 492, 529, 556, 622, 904, 920, 1030
CviQI	GTAC	2 cut(s)	762, 888
DdeI	CTNAG	3 cut(s)	257, 410, 770
DpnI	GATC	3 cut(s)	82, 441, 894
DpnII	GATC	3 cut(s)	80, 439, 892
EaeI	YGGCCR	1 cut(s)	1002
Eam1104I	CTCTTC	2 cut(s)	93, 285
EarI	CTCTTC	2 cut(s)	93, 285
Ecl136II	GAGCTC	1 cut(s)	191
Eco130I	CCWWGG	3 cut(s)	458, 542, 919
Eco147I	AGGCCT	1 cut(s)	262
Eco24I	GRGCYC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	119
Eco53kI	GAGCTC	1 cut(s)	191
Eco81I	CCTNAGG	1 cut(s)	257
EcoICRI	GAGCTC	1 cut(s)	191
EcoO109I	RGGNCCY	1 cut(s)	119
EcoRII	CCWGG	3 cut(s)	122, 364, 941
EcoT14I	CCWWGG	3 cut(s)	458, 542, 919
EcoT38I	GRGCYC	1 cut(s)	193
ErhI	CCWWGG	3 cut(s)	458, 542, 919
FaeI	CATG	9 cut(s)	179, 433, 495, 532, 559, 625, 907, 923, 1033
FaqI	GGGAC	3 cut(s)	105, 560, 1003
FatI	CATG	9 cut(s)	175, 429, 491, 528, 555, 621, 903, 919, 1029
FauI	CCCGC	1 cut(s)	568
FbaI	TGATCA	1 cut(s)	892
FblI	GTMKAC	1 cut(s)	807
Fnu4HI	GCNGC	5 cut(s)	507, 570, 573, 582, 975
FokI	GGATG	1 cut(s)	1046
FriOI	GRGCYC	1 cut(s)	193
Fsp4HI	GCNGC	5 cut(s)	507, 570, 573, 582, 975
FspBI	CTAG	3 cut(s)	18, 537, 1070
GluI	GCNGC	5 cut(s)	507, 570, 573, 582, 975
GsuI	CTGGAG	1 cut(s)	205
HaeIII	GGCC	3 cut(s)	210, 262, 1004
HapII	CCGG	1 cut(s)	986
HgaI	GACGC	1 cut(s)	1022
Hin1II	CATG	9 cut(s)	179, 433, 495, 532, 559, 625, 907, 923, 1033
HincII	GTYRAC	1 cut(s)	808
HindII	GTYRAC	1 cut(s)	808
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	2 cut(s)	21, 1049
HpaII	CCGG	1 cut(s)	986
HphI	GGTGA	2 cut(s)	467, 935
Hpy166II	GTNNAC	3 cut(s)	246, 808, 863
Hpy188I	TCNGA	3 cut(s)	289, 503, 780
Hpy188III	TCNNGA	5 cut(s)	388, 634, 896, 937, 1070
Hpy8I	GTNNAC	3 cut(s)	246, 808, 863
HpyAV	CCTTC	1 cut(s)	833
HpyCH4III	ACNGT	2 cut(s)	107, 722
HpyCH4IV	ACGT	1 cut(s)	681
HpyCH4V	TGCA	9 cut(s)	234, 353, 427, 565, 601, 677, 758, 863, 962
HpyF10VI	GCNNNNNNNGC	5 cut(s)	231, 578, 581, 590, 915
HpyF3I	CTNAG	3 cut(s)	257, 410, 770
HpySE526I	ACGT	1 cut(s)	681
Hsp92II	CATG	9 cut(s)	179, 433, 495, 532, 559, 625, 907, 923, 1033
Ksp22I	TGATCA	1 cut(s)	892
Kzo9I	GATC	3 cut(s)	80, 439, 892
LmnI	GCTCC	1 cut(s)	426
Lsp1109I	GCAGC	5 cut(s)	518, 568, 581, 584, 986
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	3 cut(s)	18, 537, 1070
MaeII	ACGT	1 cut(s)	681
MaeIII	GTNAC	1 cut(s)	603
MalI	GATC	3 cut(s)	82, 441, 894
MboI	GATC	3 cut(s)	80, 439, 892
MboII	GAAGA	9 cut(s)	110, 124, 149, 177, 302, 308, 308, 716, 987
MflI	RGATCY	1 cut(s)	80
MhlI	GDGCHC	3 cut(s)	193, 641, 865
MluCI	AATT	4 cut(s)	146, 250, 391, 667
MroXI	GAANNNNTTC	1 cut(s)	843
MseI	TTAA	4 cut(s)	60, 239, 270, 876
MspA1I	CMGCKG	1 cut(s)	575
MspI	CCGG	1 cut(s)	986
MspR9I	CCNGG	4 cut(s)	124, 366, 943, 987
MvaI	CCWGG	3 cut(s)	124, 366, 943
MvnI	CGCG	1 cut(s)	821
MwoI	GCNNNNNNNGC	5 cut(s)	231, 578, 581, 590, 915
NciI	CCSGG	1 cut(s)	987
NcoI	CCATGG	1 cut(s)	919
NdeII	GATC	3 cut(s)	80, 439, 892
NlaIII	CATG	9 cut(s)	179, 433, 495, 532, 559, 625, 907, 923, 1033
NlaIV	GGNNCC	3 cut(s)	121, 788, 947
PceI	AGGCCT	1 cut(s)	262
PdmI	GAANNNNTTC	1 cut(s)	843
PfeI	GAWTC	2 cut(s)	21, 1049
PkrI	GCNGC	5 cut(s)	508, 571, 574, 583, 976
PpuMI	RGGWCCY	1 cut(s)	119
PshBI	ATTAAT	2 cut(s)	60, 876
PsiI	TTATAA	1 cut(s)	672
Psp124BI	GAGCTC	1 cut(s)	193
Psp5II	RGGWCCY	1 cut(s)	119
Psp6I	CCWGG	3 cut(s)	122, 364, 941
PspGI	CCWGG	3 cut(s)	122, 364, 941
PspN4I	GGNNCC	3 cut(s)	121, 788, 947
PspPI	GGNCC	1 cut(s)	119
PspPPI	RGGWCCY	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	80
RsaI	GTAC	2 cut(s)	763, 889
RsaNI	GTAC	2 cut(s)	762, 888
SacI	GAGCTC	1 cut(s)	193
SalI	GTCGAC	1 cut(s)	806
SaqAI	TTAA	4 cut(s)	60, 239, 270, 876
SatI	GCNGC	5 cut(s)	507, 570, 573, 582, 975
Sau3AI	GATC	3 cut(s)	80, 439, 892
Sau96I	GGNCC	1 cut(s)	119
ScaI	AGTACT	1 cut(s)	889
ScrFI	CCNGG	4 cut(s)	124, 366, 943, 987
SduI	GDGCHC	3 cut(s)	193, 641, 865
SfaNI	GCATC	1 cut(s)	130
SinI	GGWCC	1 cut(s)	119
SpeI	ACTAGT	1 cut(s)	536
Sse9I	AATT	4 cut(s)	146, 250, 391, 667
SseBI	AGGCCT	1 cut(s)	262
SsiI	CCGC	1 cut(s)	575
SspI	AATATT	1 cut(s)	64
SspMI	CTAG	3 cut(s)	18, 537, 1070
SstI	GAGCTC	1 cut(s)	193
StuI	AGGCCT	1 cut(s)	262
StyD4I	CCNGG	4 cut(s)	122, 364, 941, 985
StyI	CCWWGG	3 cut(s)	458, 542, 919
TaaI	ACNGT	2 cut(s)	107, 722
TaiI	ACGT	1 cut(s)	684
TaqI	TCGA	3 cut(s)	483, 524, 807
TasI	AATT	4 cut(s)	146, 250, 391, 667
TatI	WGTACW	1 cut(s)	887
TfiI	GAWTC	2 cut(s)	21, 1049
Tru1I	TTAA	4 cut(s)	60, 239, 270, 876
Tru9I	TTAA	4 cut(s)	60, 239, 270, 876
TseI	GCWGC	5 cut(s)	506, 569, 572, 581, 974
TspDTI	ATGAA	8 cut(s)	111, 308, 480, 701, 716, 816, 957, 1053
TspGWI	ACGGA	2 cut(s)	167, 389
VneI	GTGCAC	1 cut(s)	861
VpaK11BI	GGWCC	1 cut(s)	119
VspI	ATTAAT	2 cut(s)	60, 876
XbaI	TCTAGA	1 cut(s)	1069
XmiI	GTMKAC	1 cut(s)	807
XmnI	GAANNNNTTC	1 cut(s)	843
XspI	CTAG	3 cut(s)	18, 537, 1070
ZrmI	AGTACT	1 cut(s)	889

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.