Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0005490

Physical Location & Seq

Genomic Coordinates Reverse (-)

26098044 .. 26100610

Gene Structure 2567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGAGAAGGCTGGCAGAGACAAAGCCAAAATTGAAGTCAACTGTGGTTGCAGTCTTTATAGCAAATGAAGAGAATTCTGCCATTTCAGGAGTTGGTGTGGATGCGCTCGTAAAGGATGGGCTACTCAGTAGGCTAAAGGATGGTCCTCTGTTTTGGATTGACACAGCAGATAAACAACCTTGCATCGGTACTGGTGGTATGATACCTTGGAAGCTTCATGTGACTGGGAAGCTTTTTCACAGTGGTTTGGCACACAAGGCTATAAACCCTTTGGAGCTAGCTATGGAAGCACTGAAAGATATCCAGTTGCGGTTCTATAGAGATTTTCCTCCCCATCCCAAGGAAGAGGTCTATGGATTTGCTACACCATCAACCATGAAGCCAACACAATGGAGTTATCCAGTTGGTGGAATAAATCAAATTCCAGCTGAGTGCACAATTTCGGGAGATGTCAGGTTAACTCCCTTCTACAACGTTAAGGATGTTATGAAAAAGCTTCAAGAATATGTGGATGACATTAACGAAAACATAGGAAACGTAGAGTCACGAGGTCCGGTTTCAAAGTATATCTTACCAGATGAAAACCTAAGGGGAAGCCTTACATTAAGTTTTGATGAGGCAATGTCCGGAGTTGCTTGCGATCTCAACTCCCGTGGATTTCATGTATTGTGTAAAGCTACTGAAGAGGTTGTTGGTCATGTAAAACCGTACTCAATTACTGGAAGTTTACCTCTCATTCGAGAACTGCAGGATGAAGGATTCGATGTTCAAACTGCTGGCTACGGCTTGATGGCAACATACCATGCCAAGAATGAGTACTGCCTTTTTTCCGATATGCGCCAAGGCTACCAGGTGTTTCTCAGCGTTATCTCTCAACTAGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

296

Amino Acids

32.72

Weight (kDa)

5.56

Isoelectric Point (pI)

33.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M20	PF01546	2 - 291	7.2e-07	Peptidase family M20/M25/M40
M20_dimer	PF07687	62 - 175	7.5e-15	Peptidase dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17830 AT4G17830
fragaria_vesca	FvH4_5g21890
malus_domestica	MD06G1033100.v1.1 MD16G1275900.v1.1
prunus_persica	Prupe.5G038300_v2.0.a1
pyrus_communis	pycom06g02740 pycom06g02750 pycom16g24540
rosa_chinensis	RchiOBHm_Chr7g0209441
rosa_laevigata	RLG00000003136
rosa_multiflora	Rmu_sc0015095.1_g000002 Rmu_sc0017361.1_g000002
rosa_roxburghii	Rroxscaffold_174G00435090 Rroxscaffold_3G00249460
rosa_rugosa	Rorug07G0112600 Rorug07G0112700 Rorug07G0112800
rosa_samantha	Rh4AG088700 Rh4CG096800 Rh5CG212700 Rh6CG141200 Rh7AG246800 Rh7BG241800 Rh7CG262400 Rh7CG389200 Rh7DG253000
rosa_wichuraiana	Rw3G003940 Rw7G020860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	407
AccIII	TCCGGA	1 cut(s)	626
AciI	CCGC	1 cut(s)	310
AclI	AACGTT	1 cut(s)	474
AcsI	RAATTY	2 cut(s)	73, 420
AcuI	CTGAAG	1 cut(s)	702
AfaI	GTAC	3 cut(s)	190, 710, 818
AfiI	CCNNNNNNNGG	3 cut(s)	185, 340, 407
AgsI	TTSAA	4 cut(s)	34, 500, 561, 770
AjnI	CCWGG	1 cut(s)	849
AjuI	GAANNNNNNNTTGG	2 cut(s)	675, 707
AloI	GAACNNNNNNTCC	2 cut(s)	750, 782
AluBI	AGCT	7 cut(s)	214, 232, 277, 281, 428, 496, 677
AluI	AGCT	7 cut(s)	214, 232, 277, 281, 428, 496, 677
Alw21I	GWGCWC	1 cut(s)	437
Alw26I	GTCTC	1 cut(s)	11
Alw44I	GTGCAC	1 cut(s)	433
Aor13HI	TCCGGA	1 cut(s)	626
ApaLI	GTGCAC	1 cut(s)	433
ApoI	RAATTY	2 cut(s)	73, 420
ArsI	GACNNNNNNTTYG	2 cut(s)	20, 52
AspLEI	GCGC	2 cut(s)	106, 840
AspS9I	GGNCC	2 cut(s)	143, 551
AsuNHI	GCTAGC	1 cut(s)	277
AvaII	GGWCC	2 cut(s)	143, 551
AxyI	CCTNAGG	1 cut(s)	587
BaeGI	GKGCMC	1 cut(s)	437
BauI	CACGAG	1 cut(s)	546
Bbv12I	GWGCWC	1 cut(s)	437
BccI	CCATC	5 cut(s)	110, 134, 342, 376, 784
BceAI	ACGGC	1 cut(s)	799
BciT130I	CCWGG	1 cut(s)	851
BcoDI	GTCTC	1 cut(s)	11
BfaI	CTAG	2 cut(s)	278, 878
BfmI	CTRYAG	2 cut(s)	316, 746
BmcAI	AGTACT	1 cut(s)	818
Bme1390I	CCNGG	1 cut(s)	851
Bme18I	GGWCC	2 cut(s)	143, 551
BmgT120I	GGNCC	2 cut(s)	143, 551
BmrFI	CCNGG	1 cut(s)	851
BmrI	ACTGGG	1 cut(s)	234
BmsI	GCATC	2 cut(s)	91, 192
BmtI	GCTAGC	1 cut(s)	281
BmuI	ACTGGG	1 cut(s)	234
BsaJI	CCNNGG	4 cut(s)	206, 339, 652, 841
BsaWI	WCCGGW	2 cut(s)	553, 626
BsaXI	ACNNNNNCTCC	2 cut(s)	81, 111
Bsc4I	CCNNNNNNNGG	3 cut(s)	185, 340, 407
Bse1I	ACTGG	5 cut(s)	196, 229, 304, 401, 724
Bse21I	CCTNAGG	1 cut(s)	587
Bse3DI	GCAATG	1 cut(s)	627
BseAI	TCCGGA	1 cut(s)	626
BseBI	CCWGG	1 cut(s)	851
BseDI	CCNNGG	4 cut(s)	206, 339, 652, 841
BseGI	GGATG	7 cut(s)	106, 121, 145, 334, 487, 517, 757
BseLI	CCNNNNNNNGG	3 cut(s)	185, 340, 407
BseMI	GCAATG	1 cut(s)	627
BseMII	CTCAG	3 cut(s)	139, 420, 874
BseNI	ACTGG	5 cut(s)	196, 229, 304, 401, 724
BseSI	GKGCMC	1 cut(s)	437
BsiHKAI	GWGCWC	1 cut(s)	437
BsiSI	CCGG	2 cut(s)	554, 627
BslI	CCNNNNNNNGG	3 cut(s)	185, 340, 407
BsmAI	GTCTC	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	437
Bsp13I	TCCGGA	1 cut(s)	626
Bsp143I	GATC	1 cut(s)	640
BspACI	CCGC	1 cut(s)	310
BspCNI	CTCAG	3 cut(s)	138, 421, 873
BspEI	TCCGGA	1 cut(s)	626
BspMAI	CTGCAG	1 cut(s)	750
BspOI	GCTAGC	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	627
BsrI	ACTGG	5 cut(s)	196, 229, 304, 401, 724
BssECI	CCNNGG	4 cut(s)	206, 339, 652, 841
BssMI	GATC	1 cut(s)	640
BssSI	CACGAG	1 cut(s)	546
BssT1I	CCWWGG	3 cut(s)	206, 339, 841
Bst2BI	CACGAG	1 cut(s)	546
Bst2UI	CCWGG	1 cut(s)	851
Bst4CI	ACNGT	3 cut(s)	43, 242, 708
Bst6I	CTCTTC	3 cut(s)	63, 339, 678
BstC8I	GCNNGC	4 cut(s)	12, 279, 637, 778
BstDEI	CTNAG	4 cut(s)	125, 429, 587, 860
BstDSI	CCRYGG	1 cut(s)	652
BstF5I	GGATG	7 cut(s)	106, 121, 145, 334, 487, 517, 757
BstHHI	GCGC	2 cut(s)	106, 840
BstKTI	GATC	1 cut(s)	643
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	1 cut(s)	640
BstMWI	GCNNNNNNNGC	2 cut(s)	257, 287
BstNI	CCWGG	1 cut(s)	851
BstSCI	CCNGG	1 cut(s)	849
BstSFI	CTRYAG	2 cut(s)	316, 746
BstSLI	GKGCMC	1 cut(s)	437
BstXI	CCANNNNNNTGG	1 cut(s)	390
Bsu36I	CCTNAGG	1 cut(s)	587
BtgI	CCRYGG	1 cut(s)	652
BtsCI	GGATG	7 cut(s)	106, 121, 145, 334, 487, 517, 757
BtsIMutI	CAGTG	2 cut(s)	247, 290
Cac8I	GCNNGC	4 cut(s)	12, 279, 637, 778
CfoI	GCGC	2 cut(s)	106, 840
Cfr13I	GGNCC	2 cut(s)	143, 551
CsiI	ACCWGGT	1 cut(s)	849
Csp6I	GTAC	3 cut(s)	189, 709, 817
CspCI	CAANNNNNGTGG	2 cut(s)	634, 669
CviAII	CATG	5 cut(s)	218, 376, 662, 698, 803
CviQI	GTAC	3 cut(s)	189, 709, 817
DdeI	CTNAG	4 cut(s)	125, 429, 587, 860
DpnI	GATC	1 cut(s)	642
DpnII	GATC	1 cut(s)	640
Eam1104I	CTCTTC	3 cut(s)	63, 339, 678
EarI	CTCTTC	3 cut(s)	63, 339, 678
Eco130I	CCWWGG	3 cut(s)	206, 339, 841
Eco32I	GATATC	1 cut(s)	301
Eco47I	GGWCC	2 cut(s)	143, 551
Eco57I	CTGAAG	1 cut(s)	702
Eco81I	CCTNAGG	1 cut(s)	587
EcoRI	GAATTC	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	849
EcoRV	GATATC	1 cut(s)	301
EcoT14I	CCWWGG	3 cut(s)	206, 339, 841
ErhI	CCWWGG	3 cut(s)	206, 339, 841
FaeI	CATG	5 cut(s)	221, 379, 665, 701, 806
FalI	AAGNNNNNCTT	2 cut(s)	554, 586
FatI	CATG	5 cut(s)	217, 375, 661, 697, 802
FokI	GGATG	7 cut(s)	113, 128, 152, 321, 494, 524, 764
FspBI	CTAG	2 cut(s)	278, 878
GlaI	GCGC	2 cut(s)	105, 839
HapII	CCGG	2 cut(s)	554, 627
HhaI	GCGC	2 cut(s)	106, 840
Hin1II	CATG	5 cut(s)	221, 379, 665, 701, 806
Hin6I	GCGC	2 cut(s)	104, 838
HinP1I	GCGC	2 cut(s)	104, 838
HincII	GTYRAC	2 cut(s)	39, 459
HindII	GTYRAC	2 cut(s)	39, 459
HindIII	AAGCTT	3 cut(s)	212, 230, 494
HinfI	GANTC	2 cut(s)	542, 759
HpaI	GTTAAC	1 cut(s)	459
HpaII	CCGG	2 cut(s)	554, 627
Hpy166II	GTNNAC	4 cut(s)	39, 435, 459, 728
Hpy188I	TCNGA	1 cut(s)	832
Hpy188III	TCNNGA	6 cut(s)	87, 444, 500, 546, 627, 740
Hpy8I	GTNNAC	4 cut(s)	39, 435, 459, 728
HpyAV	CCTTC	2 cut(s)	475, 749
HpyCH4III	ACNGT	3 cut(s)	43, 242, 708
HpyCH4IV	ACGT	2 cut(s)	474, 537
HpyCH4V	TGCA	4 cut(s)	50, 183, 435, 748
HpyF10VI	GCNNNNNNNGC	2 cut(s)	257, 287
HpyF3I	CTNAG	4 cut(s)	125, 429, 587, 860
HpySE526I	ACGT	2 cut(s)	474, 537
Hsp92II	CATG	5 cut(s)	221, 379, 665, 701, 806
HspAI	GCGC	2 cut(s)	104, 838
Kpn2I	TCCGGA	1 cut(s)	626
KspAI	GTTAAC	1 cut(s)	459
Kzo9I	GATC	1 cut(s)	640
LmnI	GCTCC	1 cut(s)	274
LweI	GCATC	2 cut(s)	91, 192
MabI	ACCWGGT	1 cut(s)	849
MaeI	CTAG	2 cut(s)	278, 878
MaeII	ACGT	2 cut(s)	474, 537
MaeIII	GTNAC	2 cut(s)	220, 543
MalI	GATC	1 cut(s)	642
MboI	GATC	1 cut(s)	640
MboII	GAAGA	3 cut(s)	80, 356, 695
MhlI	GDGCHC	1 cut(s)	437
MluCI	AATT	5 cut(s)	29, 73, 420, 438, 714
MlyI	GAGTC	1 cut(s)	551
MnlI	CCTC	7 cut(s)	156, 339, 340, 542, 610, 679, 741
MroI	TCCGGA	1 cut(s)	626
MseI	TTAA	4 cut(s)	458, 477, 519, 605
MspA1I	CMGCKG	1 cut(s)	428
MspI	CCGG	2 cut(s)	554, 627
MspR9I	CCNGG	1 cut(s)	851
MvaI	CCWGG	1 cut(s)	851
MwoI	GCNNNNNNNGC	2 cut(s)	257, 287
NdeII	GATC	1 cut(s)	640
NheI	GCTAGC	1 cut(s)	277
NlaIII	CATG	5 cut(s)	221, 379, 665, 701, 806
NmuCI	GTSAC	2 cut(s)	220, 543
PfeI	GAWTC	1 cut(s)	759
PflMI	CCANNNNNTGG	1 cut(s)	407
PleI	GAGTC	1 cut(s)	550
PpsI	GAGTC	1 cut(s)	550
Psp1406I	AACGTT	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	849
PspGI	CCWGG	1 cut(s)	849
PspPI	GGNCC	2 cut(s)	143, 551
PstI	CTGCAG	1 cut(s)	750
PvuII	CAGCTG	1 cut(s)	428
RsaI	GTAC	3 cut(s)	190, 710, 818
RsaNI	GTAC	3 cut(s)	189, 709, 817
SaqAI	TTAA	4 cut(s)	458, 477, 519, 605
Sau3AI	GATC	1 cut(s)	640
Sau96I	GGNCC	2 cut(s)	143, 551
ScaI	AGTACT	1 cut(s)	818
SchI	GAGTC	1 cut(s)	551
ScrFI	CCNGG	1 cut(s)	851
SduI	GDGCHC	1 cut(s)	437
SexAI	ACCWGGT	1 cut(s)	849
SfaNI	GCATC	2 cut(s)	91, 192
SfcI	CTRYAG	2 cut(s)	316, 746
SinI	GGWCC	2 cut(s)	143, 551
Sse9I	AATT	5 cut(s)	29, 73, 420, 438, 714
SsiI	CCGC	1 cut(s)	310
SspMI	CTAG	2 cut(s)	278, 878
StyD4I	CCNGG	1 cut(s)	849
StyI	CCWWGG	3 cut(s)	206, 339, 841
TaaI	ACNGT	3 cut(s)	43, 242, 708
TaiI	ACGT	2 cut(s)	477, 540
TaqI	TCGA	2 cut(s)	739, 762
TasI	AATT	5 cut(s)	29, 73, 420, 438, 714
TatI	WGTACW	1 cut(s)	816
TfiI	GAWTC	1 cut(s)	759
Tru1I	TTAA	4 cut(s)	458, 477, 519, 605
Tru9I	TTAA	4 cut(s)	458, 477, 519, 605
TscAI	CASTG	2 cut(s)	247, 297
TseFI	GTSAC	2 cut(s)	220, 543
Tsp45I	GTSAC	2 cut(s)	220, 543
TspDTI	ATGAA	7 cut(s)	81, 206, 392, 503, 594, 650, 768
TspRI	CASTG	2 cut(s)	247, 297
Van91I	CCANNNNNTGG	1 cut(s)	407
VneI	GTGCAC	1 cut(s)	433
VpaK11BI	GGWCC	2 cut(s)	143, 551
XapI	RAATTY	2 cut(s)	73, 420
XspI	CTAG	2 cut(s)	278, 878
ZrmI	AGTACT	1 cut(s)	818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.