Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003861

Physical Location & Seq

Genomic Coordinates Forward (+)

26946217 .. 26948678

Gene Structure 2462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGATAGAGATGATTATGGTCAATCAGGCGACGAATATGAGGATTATGAGGACGATGAGGATGGTGAAGAATATGAAGAGGAAGAGGAAGATCGATCCTCTTTATAAGCCTACCAAGGAAGCATTGGCATACCTTGAGTTGAGACAACGCTTGAAAGAACAATTACGAAAGAAGAAAAGCGGTTCTTCTTTGGCCAACTCCAGTAATAAAAAGAAGAAGCTCCCCTATGACAATTTTCGATCTTTCTTTGGCCCATCTCAACCAGTTATTGCTGAGAGAGTGATTCAAGAAAGCAAATCGTTGTTAGAAACCAAGCACCTAACATCCAGTTCTACCAACTTTGTCCATCATAACAAGAAGAGCTCTGGATCAACCTCTGCTGTAACGAAATCTGTATCAAATGATCAGAAACCCAAAGTCATTAATGAGGTTAAGAGTAAAGTACAAAAGATTAAGGATACAAGAGATTACTCGTTTTTACTTTCTGACGATGCAGAGCCCCCAGCCCCTACAAAAGATCGACCACCTCAAAATGCCTCTGTTTCAAATTCTGAGGTGCGATCTAGTCAAATGGCGACAAATAATGACCCGTACCTTCATCAAATAATGGAAGACATGTACCTTCGGCAAATAATGGCAGACATGTACCTTCAGCAAATAATGGTAGACATGTACCTTCAGCAAATAATGGCAGACATGTACCTTCAGCAAATAATGGTAGAGTTGTACCTGGCTGTCGTGATGAAAGGAAACTGGTATCTACGAATGGACAGATGCATTCTAAAGTGGGGCCCAATAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPT2

Protein Analysis

268

Amino Acids

31.04

Weight (kDa)

9.84

Isoelectric Point (pI)

42.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22720 AT2G22720 AT2G22720 AT2G22720 AT2G22720 AT2G22720 AT4G37860 AT4G37860
fragaria_vesca	FvH4_1g18820 FvH4_1g18820 FvH4_1g18820 FvH4_1g18820 FvH4_1g18820 FvH4_1g18820
malus_domestica	MD01G1046400.v1.1 MD02G1268800.v1.1 MD02G1269400.v1.1 MD02G1269600.v1.1 MD16G1281700.v1.1
prunus_persica	Prupe.6G211200_v2.0.a1 Prupe.6G211200_v2.0.a1
pyrus_communis	pycom15g26880 pycom16g22350 pycom16g25140
rosa_chinensis	RchiOBHm_Chr2g0109681
rosa_laevigata	RLG00000017756
rosa_multiflora	Rmu_sc0000332.1_g000063 Rmu_sc0036272.1_g000001
rosa_roxburghii	Rroxscaffold_2G00134030
rosa_rugosa	Rorug02G0162000
rosa_samantha	Rh2AG214200 Rh2BG224500 Rh2CG216500 Rh2DG219800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	105
AccI	GTMKAC	1 cut(s)	666
AciI	CCGC	1 cut(s)	180
AclWI	GGATC	2 cut(s)	89, 376
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	547
AcuI	CTGAAG	3 cut(s)	635, 662, 689
AfaI	GTAC	7 cut(s)	444, 593, 620, 647, 674, 701, 728
AflIII	ACRYGT	4 cut(s)	615, 642, 669, 696
AgsI	TTSAA	3 cut(s)	154, 287, 546
AjnI	CCWGG	1 cut(s)	729
AluBI	AGCT	2 cut(s)	220, 363
AluI	AGCT	2 cut(s)	220, 363
Alw21I	GWGCWC	1 cut(s)	365
Alw26I	GTCTC	1 cut(s)	136
AlwI	GGATC	2 cut(s)	89, 376
AoxI	GGCC	3 cut(s)	192, 250, 790
ApaI	GGGCCC	1 cut(s)	794
ApoI	RAATTY	1 cut(s)	547
AseI	ATTAAT	1 cut(s)	423
AspS9I	GGNCC	3 cut(s)	251, 790, 791
AsuHPI	GGTGA	1 cut(s)	76
BaeGI	GKGCMC	1 cut(s)	794
BalI	TGGCCA	1 cut(s)	194
BanII	GRGCYC	3 cut(s)	365, 501, 794
BbsI	GAAGAC	1 cut(s)	618
Bbv12I	GWGCWC	1 cut(s)	365
BccI	CCATC	3 cut(s)	55, 262, 354
BciT130I	CCWGG	1 cut(s)	731
BciVI	GTATCC	1 cut(s)	451
BclI	TGATCA	1 cut(s)	403
BcoDI	GTCTC	1 cut(s)	136
BfaI	CTAG	1 cut(s)	564
BfuI	GTATCC	1 cut(s)	451
Bme1390I	CCNGG	1 cut(s)	731
BmgT120I	GGNCC	3 cut(s)	251, 790, 791
BmiI	GGNNCC	2 cut(s)	791, 792
BmrFI	CCNGG	1 cut(s)	731
BmsI	GCATC	2 cut(s)	481, 764
BpiI	GAAGAC	1 cut(s)	618
BpmI	CTGGAG	1 cut(s)	184
BpuEI	CTTGAG	1 cut(s)	155
Bsa29I	ATCGAT	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	114
Bse1I	ACTGG	4 cut(s)	201, 263, 327, 758
BseBI	CCWGG	1 cut(s)	731
BseCI	ATCGAT	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	114
BseGI	GGATG	2 cut(s)	66, 323
BseMII	CTCAG	2 cut(s)	264, 543
BseNI	ACTGG	4 cut(s)	201, 263, 327, 758
BseSI	GKGCMC	1 cut(s)	794
BseYI	CCCAGC	1 cut(s)	502
BshFI	GGCC	3 cut(s)	194, 252, 792
BshVI	ATCGAT	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	365
BsmAI	GTCTC	1 cut(s)	136
BsmI	GAATGC	1 cut(s)	777
BsnI	GGCC	3 cut(s)	194, 252, 792
Bsp120I	GGGCCC	1 cut(s)	790
Bsp1286I	GDGCHC	3 cut(s)	365, 501, 794
Bsp143I	GATC	7 cut(s)	90, 94, 239, 368, 403, 517, 560
BspACI	CCGC	1 cut(s)	180
BspANI	GGCC	3 cut(s)	194, 252, 792
BspCNI	CTCAG	2 cut(s)	265, 544
BspDI	ATCGAT	1 cut(s)	93
BspLI	GGNNCC	2 cut(s)	791, 792
BspPI	GGATC	2 cut(s)	89, 376
BspQI	GCTCTTC	1 cut(s)	353
BsrI	ACTGG	4 cut(s)	201, 263, 327, 758
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	7 cut(s)	90, 94, 239, 368, 403, 517, 560
BssT1I	CCWWGG	1 cut(s)	114
Bst2UI	CCWGG	1 cut(s)	731
Bst6I	CTCTTC	3 cut(s)	71, 77, 353
BstDEI	CTNAG	2 cut(s)	273, 552
BstF5I	GGATG	2 cut(s)	66, 323
BstKTI	GATC	7 cut(s)	93, 97, 242, 371, 406, 520, 563
BstMAI	GTCTC	1 cut(s)	136
BstMBI	GATC	7 cut(s)	90, 94, 239, 368, 403, 517, 560
BstNI	CCWGG	1 cut(s)	731
BstNSI	RCATGY	4 cut(s)	619, 646, 673, 700
BstSCI	CCNGG	1 cut(s)	729
BstSLI	GKGCMC	1 cut(s)	794
BstV2I	GAAGAC	1 cut(s)	618
Bsu15I	ATCGAT	1 cut(s)	93
BsuI	GTATCC	1 cut(s)	451
BsuRI	GGCC	3 cut(s)	194, 252, 792
BsuTUI	ATCGAT	1 cut(s)	93
BtsCI	GGATG	2 cut(s)	66, 323
Cfr13I	GGNCC	3 cut(s)	251, 790, 791
ClaI	ATCGAT	1 cut(s)	93
Csp6I	GTAC	7 cut(s)	443, 592, 619, 646, 673, 700, 727
CviAII	CATG	4 cut(s)	616, 643, 670, 697
CviJI	RGCY	9 cut(s)	109, 194, 220, 252, 363, 499, 506, 734, 792
CviKI_1	RGCY	9 cut(s)	109, 194, 220, 252, 363, 499, 506, 734, 792
CviQI	GTAC	7 cut(s)	443, 592, 619, 646, 673, 700, 727
DdeI	CTNAG	2 cut(s)	273, 552
DpnI	GATC	7 cut(s)	92, 96, 241, 370, 405, 519, 562
DpnII	GATC	7 cut(s)	90, 94, 239, 368, 403, 517, 560
EaeI	YGGCCR	1 cut(s)	192
Eam1104I	CTCTTC	3 cut(s)	71, 77, 353
EarI	CTCTTC	3 cut(s)	71, 77, 353
Ecl136II	GAGCTC	1 cut(s)	363
Eco130I	CCWWGG	1 cut(s)	114
Eco24I	GRGCYC	3 cut(s)	365, 501, 794
Eco53kI	GAGCTC	1 cut(s)	363
Eco57I	CTGAAG	3 cut(s)	635, 662, 689
EcoICRI	GAGCTC	1 cut(s)	363
EcoO109I	RGGNCCY	1 cut(s)	790
EcoRII	CCWGG	1 cut(s)	729
EcoT14I	CCWWGG	1 cut(s)	114
EcoT22I	ATGCAT	1 cut(s)	779
EcoT38I	GRGCYC	3 cut(s)	365, 501, 794
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	4 cut(s)	619, 646, 673, 700
FalI	AAGNNNNNCTT	2 cut(s)	169, 201
FatI	CATG	4 cut(s)	615, 642, 669, 696
FbaI	TGATCA	1 cut(s)	403
FblI	GTMKAC	1 cut(s)	666
FokI	GGATG	2 cut(s)	73, 310
FriOI	GRGCYC	3 cut(s)	365, 501, 794
FspBI	CTAG	1 cut(s)	564
GsaI	CCCAGC	1 cut(s)	506
GsuI	CTGGAG	1 cut(s)	184
HaeIII	GGCC	3 cut(s)	194, 252, 792
Hin1II	CATG	4 cut(s)	619, 646, 673, 700
HinfI	GANTC	1 cut(s)	283
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	1 cut(s)	667
Hpy188I	TCNGA	3 cut(s)	408, 487, 553
Hpy188III	TCNNGA	3 cut(s)	287, 366, 739
Hpy8I	GTNNAC	1 cut(s)	667
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	5 cut(s)	605, 632, 659, 686, 713
HpyCH4V	TGCA	2 cut(s)	494, 777
HpyF3I	CTNAG	2 cut(s)	273, 552
Hsp92II	CATG	4 cut(s)	619, 646, 673, 700
Ksp22I	TGATCA	1 cut(s)	403
Kzo9I	GATC	7 cut(s)	90, 94, 239, 368, 403, 517, 560
LguI	GCTCTTC	1 cut(s)	353
LmnI	GCTCC	1 cut(s)	225
LpnPI	CCDG	9 cut(s)	11, 214, 276, 340, 351, 516, 716, 739, 743
LweI	GCATC	2 cut(s)	481, 764
MaeI	CTAG	1 cut(s)	564
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	7 cut(s)	92, 96, 241, 370, 405, 519, 562
MboI	GATC	7 cut(s)	90, 94, 239, 368, 403, 517, 560
MboII	GAAGA	9 cut(s)	79, 88, 94, 100, 177, 184, 226, 370, 623
MhlI	GDGCHC	3 cut(s)	365, 501, 794
MlsI	TGGCCA	1 cut(s)	194
MluCI	AATT	3 cut(s)	161, 232, 547
MluNI	TGGCCA	1 cut(s)	194
Mox20I	TGGCCA	1 cut(s)	194
Mph1103I	ATGCAT	1 cut(s)	779
MscI	TGGCCA	1 cut(s)	194
MseI	TTAA	3 cut(s)	423, 432, 453
Msp20I	TGGCCA	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	731
Mva1269I	GAATGC	1 cut(s)	777
MvaI	CCWGG	1 cut(s)	731
NdeII	GATC	7 cut(s)	90, 94, 239, 368, 403, 517, 560
NlaIII	CATG	4 cut(s)	619, 646, 673, 700
NlaIV	GGNNCC	2 cut(s)	791, 792
NsiI	ATGCAT	1 cut(s)	779
NspI	RCATGY	4 cut(s)	619, 646, 673, 700
PciI	ACATGT	4 cut(s)	615, 642, 669, 696
PciSI	GCTCTTC	1 cut(s)	353
PctI	GAATGC	1 cut(s)	777
PfeI	GAWTC	1 cut(s)	283
PscI	ACATGT	4 cut(s)	615, 642, 669, 696
PshBI	ATTAAT	1 cut(s)	423
PsiI	TTATAA	1 cut(s)	105
Psp124BI	GAGCTC	1 cut(s)	365
Psp6I	CCWGG	1 cut(s)	729
PspFI	CCCAGC	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	729
PspN4I	GGNNCC	2 cut(s)	791, 792
PspOMI	GGGCCC	1 cut(s)	790
PspPI	GGNCC	3 cut(s)	251, 790, 791
RsaI	GTAC	7 cut(s)	444, 593, 620, 647, 674, 701, 728
RsaNI	GTAC	7 cut(s)	443, 592, 619, 646, 673, 700, 727
SacI	GAGCTC	1 cut(s)	365
SapI	GCTCTTC	1 cut(s)	353
SaqAI	TTAA	3 cut(s)	423, 432, 453
Sau3AI	GATC	7 cut(s)	90, 94, 239, 368, 403, 517, 560
Sau96I	GGNCC	3 cut(s)	251, 790, 791
ScrFI	CCNGG	1 cut(s)	731
SduI	GDGCHC	3 cut(s)	365, 501, 794
SfaNI	GCATC	2 cut(s)	481, 764
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	3 cut(s)	161, 232, 547
SsiI	CCGC	1 cut(s)	180
SspMI	CTAG	1 cut(s)	564
SstI	GAGCTC	1 cut(s)	365
StyD4I	CCNGG	1 cut(s)	729
StyI	CCWWGG	1 cut(s)	114
TaqI	TCGA	3 cut(s)	93, 238, 520
TasI	AATT	3 cut(s)	161, 232, 547
TatI	WGTACW	1 cut(s)	442
TfiI	GAWTC	1 cut(s)	283
Tru1I	TTAA	3 cut(s)	423, 432, 453
Tru9I	TTAA	3 cut(s)	423, 432, 453
TspDTI	ATGAA	3 cut(s)	89, 587, 758
VspI	ATTAAT	1 cut(s)	423
XapI	RAATTY	1 cut(s)	547
XceI	RCATGY	4 cut(s)	619, 646, 673, 700
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XmiI	GTMKAC	1 cut(s)	666
XspI	CTAG	1 cut(s)	564
Zsp2I	ATGCAT	1 cut(s)	779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.