Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0010064

Physical Location & Seq

Genomic Coordinates Forward (+)

27225441 .. 27227642

Gene Structure 2202 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGAGAGGAATATTTATGGTAATTGTGAAGGGGAAGGGAATTGTGGATATGAGAATGGGGTGATGATGACAAGAGACCCCAAACCAAGGCTAAGGTGGACGCCGGATCTTCACCACAGATTCGTTGATGCTGTCACTAAACTCGGCGGCCCTCACAAAGCAACTCCAAAGTCCGTCTTGAGGCTCATGGGCTTGAAGGGATTAACTTTGTACCATTTGAAAAGCCATTTGCAGAAGTATAGGCTTGGACAGCACGCTCAGAAACACAACTCCATCGAAGAACAAAGCCGGGAGAATAATGGGGACTCATATGTACATTTCAGTAATCATCTTTCCACAGGTTCTAGCATCAAATCATCAAGAGGCGGTAATATCGAACAAGGAACACTTCCATTGTCGGAGGAACTCAAGTGTCAGATTGAAGTACAAAACAGATTGCAAGAGCAGCTTGAGGTTCAAAAGAAGTTGCAGATGAGAATTGAAGCTCAAGGAAAGTACTTGCAAGCCATATTGGAGAAGGCCCAAAATGGCCTCACCCTCGACGTGAAAGGACCTGATAATATAGAAGCAACAAGAGCCCAATTAACGGATTTCAATTTGGCTCTATCGAATTTTATGGAGAATATGGGCGAACAAGATCGAGGAGGCAACACAATAGAGATGAATGATATTTATAAGAAGAACAATGGATCAACTTTTGAGATATATGAAGAGGGAATAAGAGAAGAAAATAAAGATACAAAGATTAAGGTTGAGGGGGGTTCGATACGTTTGGACTTAAATACTAAAGGAAGCTATGATTATGTTGGTTCAAATGGAGGTGAATTCGAAACAAGATGCTTTCGTTTACAAGATACTACACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

289

Amino Acids

32.61

Weight (kDa)

6.52

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	30 - 81	2e-08	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	132 - 176	1e-20	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45580 AT5G45580 AT5G45580
fragaria_vesca	FvH4_5g23660
malus_domestica	MD00G1000500.v1.1 MD06G1022600.v1.1
prunus_persica	Prupe.5G023700_v2.0.a1 Prupe.5G023700_v2.0.a1 Prupe.5G023700_v2.0.a1
pyrus_communis	pycom16g25380
rosa_chinensis	RchiOBHm_Chr7g0212961
rosa_laevigata	RLG00000002842
rosa_multiflora	Rmu_sc0001684.1_g000008 Rmu_sc0037369.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246380
rosa_rugosa	Rorug07G0138400
rosa_samantha	Rh7AG269700 Rh7BG265100 Rh7CG288900 Rh7DG277800
rosa_wichuraiana	Rw7G023430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	675
AciI	CCGC	2 cut(s)	147, 366
AclWI	GGATC	2 cut(s)	114, 697
AcsI	RAATTY	2 cut(s)	610, 824
AcyI	GRCGYC	1 cut(s)	101
AfaI	GTAC	4 cut(s)	212, 315, 426, 497
AfiI	CCNNNNNNNGG	3 cut(s)	87, 180, 586
AgsI	TTSAA	7 cut(s)	196, 220, 422, 458, 482, 595, 813
AjiI	CACGTC	1 cut(s)	544
AluBI	AGCT	3 cut(s)	448, 485, 795
AluI	AGCT	3 cut(s)	448, 485, 795
Alw26I	GTCTC	1 cut(s)	69
AlwI	GGATC	2 cut(s)	114, 697
AoxI	GGCC	3 cut(s)	148, 519, 529
ApeKI	GCWGC	1 cut(s)	445
ApoI	RAATTY	2 cut(s)	610, 824
AspS9I	GGNCC	3 cut(s)	149, 520, 551
AsuC2I	CCSGG	1 cut(s)	290
AsuHPI	GGTGA	4 cut(s)	73, 104, 526, 833
AsuII	TTCGAA	1 cut(s)	828
AvaII	GGWCC	1 cut(s)	551
BanII	GRGCYC	1 cut(s)	580
BbvI	GCAGC	1 cut(s)	457
BccI	CCATC	1 cut(s)	281
BcnI	CCSGG	1 cut(s)	290
BcoDI	GTCTC	1 cut(s)	69
BfaI	CTAG	1 cut(s)	345
BisI	GCNGC	2 cut(s)	148, 446
BlsI	GCNGC	2 cut(s)	149, 447
BmcAI	AGTACT	1 cut(s)	497
Bme1390I	CCNGG	1 cut(s)	290
Bme18I	GGWCC	1 cut(s)	551
BmgBI	CACGTC	1 cut(s)	544
BmgT120I	GGNCC	3 cut(s)	149, 520, 551
BmrFI	CCNGG	1 cut(s)	290
BmsI	GCATC	3 cut(s)	118, 357, 827
Bpu10I	CCTNAGC	1 cut(s)	92
Bpu14I	TTCGAA	1 cut(s)	828
BpuEI	CTTGAG	4 cut(s)	199, 392, 470, 471
BpuMI	CCSGG	1 cut(s)	290
BsaHI	GRCGYC	1 cut(s)	101
BsaI	GGTCTC	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 180, 586
BseDI	CCNNGG	1 cut(s)	86
BseLI	CCNNNNNNNGG	3 cut(s)	87, 180, 586
BseMII	CTCAG	1 cut(s)	272
BseRI	GAGGAG	1 cut(s)	657
BseXI	GCAGC	1 cut(s)	457
BshFI	GGCC	3 cut(s)	150, 521, 531
BsiSI	CCGG	2 cut(s)	104, 289
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	3 cut(s)	87, 180, 586
BsmAI	GTCTC	1 cut(s)	69
BsmFI	GGGAC	1 cut(s)	317
BsnI	GGCC	3 cut(s)	150, 521, 531
Bso31I	GGTCTC	1 cut(s)	69
Bsp119I	TTCGAA	1 cut(s)	828
Bsp1286I	GDGCHC	1 cut(s)	580
Bsp1407I	TGTACA	1 cut(s)	313
Bsp143I	GATC	3 cut(s)	106, 637, 689
BspACI	CCGC	2 cut(s)	147, 366
BspANI	GGCC	3 cut(s)	150, 521, 531
BspCNI	CTCAG	1 cut(s)	271
BspPI	GGATC	2 cut(s)	114, 697
BspT104I	TTCGAA	1 cut(s)	828
BspTNI	GGTCTC	1 cut(s)	69
BsrGI	TGTACA	1 cut(s)	313
BssECI	CCNNGG	1 cut(s)	86
BssMI	GATC	3 cut(s)	106, 637, 689
BssNI	GRCGYC	1 cut(s)	101
BssT1I	CCWWGG	1 cut(s)	86
Bst6I	CTCTTC	1 cut(s)	705
BstACI	GRCGYC	1 cut(s)	101
BstAUI	TGTACA	1 cut(s)	313
BstBI	TTCGAA	1 cut(s)	828
BstC8I	GCNNGC	2 cut(s)	255, 504
BstDEI	CTNAG	2 cut(s)	92, 258
BstKTI	GATC	3 cut(s)	109, 640, 692
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	3 cut(s)	106, 637, 689
BstMWI	GCNNNNNNNGC	3 cut(s)	250, 445, 575
BstSCI	CCNGG	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	457
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BsuRI	GGCC	3 cut(s)	150, 521, 531
BtrI	CACGTC	1 cut(s)	544
Cac8I	GCNNGC	2 cut(s)	255, 504
Cfr13I	GGNCC	3 cut(s)	149, 520, 551
CseI	GACGC	1 cut(s)	109
Csp6I	GTAC	4 cut(s)	211, 314, 425, 496
CviAII	CATG	1 cut(s)	187
CviQI	GTAC	4 cut(s)	211, 314, 425, 496
DdeI	CTNAG	2 cut(s)	92, 258
DpnI	GATC	3 cut(s)	108, 639, 691
DpnII	GATC	3 cut(s)	106, 637, 689
Eam1104I	CTCTTC	1 cut(s)	705
EarI	CTCTTC	1 cut(s)	705
Eco130I	CCWWGG	1 cut(s)	86
Eco24I	GRGCYC	1 cut(s)	580
Eco31I	GGTCTC	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	551
EcoO109I	RGGNCCY	1 cut(s)	551
EcoRI	GAATTC	1 cut(s)	824
EcoT14I	CCWWGG	1 cut(s)	86
EcoT38I	GRGCYC	1 cut(s)	580
ErhI	CCWWGG	1 cut(s)	86
FaeI	CATG	1 cut(s)	190
FalI	AAGNNNNNCTT	6 cut(s)	161, 193, 372, 404, 432, 464
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	1 cut(s)	186
FauNDI	CATATG	1 cut(s)	310
Fnu4HI	GCNGC	2 cut(s)	148, 446
FriOI	GRGCYC	1 cut(s)	580
Fsp4HI	GCNGC	2 cut(s)	148, 446
FspBI	CTAG	1 cut(s)	345
GluI	GCNGC	2 cut(s)	148, 446
HaeIII	GGCC	3 cut(s)	150, 521, 531
HapII	CCGG	2 cut(s)	104, 289
HgaI	GACGC	1 cut(s)	109
Hin1I	GRCGYC	1 cut(s)	101
Hin1II	CATG	1 cut(s)	190
HinfI	GANTC	2 cut(s)	120, 305
HpaII	CCGG	2 cut(s)	104, 289
HphI	GGTGA	4 cut(s)	73, 104, 526, 833
Hpy166II	GTNNAC	2 cut(s)	99, 848
Hpy188I	TCNGA	3 cut(s)	261, 400, 417
Hpy188III	TCNNGA	2 cut(s)	178, 360
Hpy8I	GTNNAC	2 cut(s)	99, 848
Hpy99I	CGWCG	1 cut(s)	545
HpyAV	CCTTC	4 cut(s)	23, 29, 190, 511
HpyCH4IV	ACGT	2 cut(s)	543, 769
HpyCH4V	TGCA	4 cut(s)	232, 439, 469, 502
HpyF10VI	GCNNNNNNNGC	3 cut(s)	250, 445, 575
HpyF3I	CTNAG	2 cut(s)	92, 258
HpySE526I	ACGT	2 cut(s)	543, 769
Hsp92I	GRCGYC	1 cut(s)	101
Hsp92II	CATG	1 cut(s)	190
Kzo9I	GATC	3 cut(s)	106, 637, 689
LpnPI	CCDG	4 cut(s)	117, 302, 324, 567
Lsp1109I	GCAGC	1 cut(s)	457
LweI	GCATC	3 cut(s)	118, 357, 827
MaeI	CTAG	1 cut(s)	345
MaeII	ACGT	2 cut(s)	543, 769
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	3 cut(s)	108, 639, 691
MboI	GATC	3 cut(s)	106, 637, 689
MboII	GAAGA	5 cut(s)	101, 290, 691, 722, 737
MflI	RGATCY	1 cut(s)	106
MhlI	GDGCHC	1 cut(s)	580
MluCI	AATT	7 cut(s)	22, 40, 477, 581, 595, 610, 824
MlyI	GAGTC	1 cut(s)	299
MmeI	TCCRAC	1 cut(s)	378
MseI	TTAA	4 cut(s)	203, 584, 747, 779
MspI	CCGG	2 cut(s)	104, 289
MspR9I	CCNGG	1 cut(s)	290
MwoI	GCNNNNNNNGC	3 cut(s)	250, 445, 575
NciI	CCSGG	1 cut(s)	290
NdeI	CATATG	1 cut(s)	310
NdeII	GATC	3 cut(s)	106, 637, 689
NlaIII	CATG	1 cut(s)	190
NmeAIII	GCCGAG	1 cut(s)	123
NmuCI	GTSAC	1 cut(s)	133
NspV	TTCGAA	1 cut(s)	828
PfeI	GAWTC	1 cut(s)	120
PkrI	GCNGC	2 cut(s)	149, 447
PleI	GAGTC	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	299
PpuMI	RGGWCCY	1 cut(s)	551
PsiI	TTATAA	1 cut(s)	675
Psp5II	RGGWCCY	1 cut(s)	551
PspPI	GGNCC	3 cut(s)	149, 520, 551
PspPPI	RGGWCCY	1 cut(s)	551
PsuI	RGATCY	1 cut(s)	106
RsaI	GTAC	4 cut(s)	212, 315, 426, 497
RsaNI	GTAC	4 cut(s)	211, 314, 425, 496
SaqAI	TTAA	4 cut(s)	203, 584, 747, 779
SatI	GCNGC	2 cut(s)	148, 446
Sau3AI	GATC	3 cut(s)	106, 637, 689
Sau96I	GGNCC	3 cut(s)	149, 520, 551
ScaI	AGTACT	1 cut(s)	497
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	1 cut(s)	290
SduI	GDGCHC	1 cut(s)	580
SfaNI	GCATC	3 cut(s)	118, 357, 827
SfuI	TTCGAA	1 cut(s)	828
SinI	GGWCC	1 cut(s)	551
SmlI	CTYRAG	4 cut(s)	178, 407, 449, 486
SmoI	CTYRAG	4 cut(s)	178, 407, 449, 486
Sse9I	AATT	7 cut(s)	22, 40, 477, 581, 595, 610, 824
SsiI	CCGC	2 cut(s)	147, 366
SspI	AATATT	1 cut(s)	13
SspMI	CTAG	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	288
StyI	CCWWGG	1 cut(s)	86
TaiI	ACGT	2 cut(s)	546, 772
TaqI	TCGA	7 cut(s)	276, 375, 540, 608, 640, 764, 828
TasI	AATT	7 cut(s)	22, 40, 477, 581, 595, 610, 824
TatI	WGTACW	3 cut(s)	313, 424, 495
TauI	GCSGC	1 cut(s)	150
TfiI	GAWTC	1 cut(s)	120
Tru1I	TTAA	4 cut(s)	203, 584, 747, 779
Tru9I	TTAA	4 cut(s)	203, 584, 747, 779
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	1 cut(s)	445
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	2 cut(s)	677, 723
TspGWI	ACGGA	2 cut(s)	163, 602
VpaK11BI	GGWCC	1 cut(s)	551
XapI	RAATTY	2 cut(s)	610, 824
XcmI	CCANNNNNNNNNTGG	1 cut(s)	93
XspI	CTAG	1 cut(s)	345
ZrmI	AGTACT	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.