pycom16g25740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0006368
Physical Location & Seq
Forward (+)
27870452 .. 27872807
2356 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 474 bp
ATGGCATTAATTTCTGAGTTAATAACTAACACAATGATCTTGGGGACTTGGCCTTTCTCAGTTTTGAAGCTCTTATGCTTGTTTGGCATAAAGACTGCTTTTATTGTCATTCATGCATGGATGGAGTTGGTGAGGGCAGCAGTCTGCTTCCAAGTGAACATTTTCTTGAGAATCATGATATGGACATTGGCACTTATATCTCTGCTGGGGCGAGTTTTGACTACCTTACAGAGGGAGAGGCAGCTGGAAAAACATTTACTCGATATGCAAATTGAGGTGGAGAATCGAGCATTGGATAGAAAAGAGCTTCAGGAGCATCTACATACAGCCATTAACGAACGAAGAATGATGGAGTTGATATTAGCAGAACTTGAAGGGGAACATGACAAGGCCATTGCCAAAGTTGAACTACTAGCGAGCGAGTTACACGATCTGAGAACTGAAAATCTGCGGCTAAAAGAAATTCAGGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

18.25

Weight (kDa)

6.07

Isoelectric Point (pI)

30.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 451
AcsI RAATTY 1 cut(s) 462
AcuI CTGAAG 1 cut(s) 293
AfiI CCNNNNNNNGG 1 cut(s) 231
AgsI TTSAA 3 cut(s) 67, 374, 407
AjuI GAANNNNNNNTTGG 2 cut(s) 275, 307
AluBI AGCT 3 cut(s) 70, 244, 307
AluI AGCT 3 cut(s) 70, 244, 307
AoxI GGCC 2 cut(s) 50, 390
ApeKI GCWGC 2 cut(s) 137, 241
ApoI RAATTY 1 cut(s) 462
AseI ATTAAT 1 cut(s) 8
Asp700I GAANNNNTTC 1 cut(s) 161
AsuHPI GGTGA 1 cut(s) 142
BbvI GCAGC 2 cut(s) 149, 253
BccI CCATC 2 cut(s) 115, 343
BfaI CTAG 1 cut(s) 413
BisI GCNGC 3 cut(s) 138, 242, 452
BlsI GCNGC 3 cut(s) 139, 243, 453
BmsI GCATC 1 cut(s) 325
BpuEI CTTGAG 1 cut(s) 187
Bsc4I CCNNNNNNNGG 1 cut(s) 231
Bse3DI GCAATG 1 cut(s) 393
BseGI GGATG 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 231
BseMI GCAATG 1 cut(s) 393
BseMII CTCAG 3 cut(s) 6, 72, 425
BseXI GCAGC 2 cut(s) 149, 253
BseYI CCCAGC 1 cut(s) 205
BshFI GGCC 2 cut(s) 52, 392
BslFI GGGAC 1 cut(s) 58
BslI CCNNNNNNNGG 1 cut(s) 231
BsmFI GGGAC 1 cut(s) 58
BsnI GGCC 2 cut(s) 52, 392
Bsp143I GATC 2 cut(s) 36, 430
BspACI CCGC 1 cut(s) 451
BspANI GGCC 2 cut(s) 52, 392
BspCNI CTCAG 3 cut(s) 7, 71, 426
BspHI TCATGA 1 cut(s) 174
BsrDI GCAATG 1 cut(s) 393
BssMI GATC 2 cut(s) 36, 430
BstC8I GCNNGC 1 cut(s) 418
BstDEI CTNAG 3 cut(s) 15, 58, 434
BstENI CCTNNNNNAGG 1 cut(s) 229
BstF5I GGATG 1 cut(s) 126
BstKTI GATC 2 cut(s) 39, 433
BstMBI GATC 2 cut(s) 36, 430
BstMWI GCNNNNNNNGC 2 cut(s) 84, 313
BstV1I GCAGC 2 cut(s) 149, 253
BsuRI GGCC 2 cut(s) 52, 392
BtsCI GGATG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 418
CciI TCATGA 1 cut(s) 174
CviAII CATG 4 cut(s) 113, 117, 175, 383
CviJI RGCY 7 cut(s) 52, 70, 244, 307, 329, 392, 454
CviKI_1 RGCY 7 cut(s) 52, 70, 244, 307, 329, 392, 454
DdeI CTNAG 3 cut(s) 15, 58, 434
DpnI GATC 2 cut(s) 38, 432
DpnII GATC 2 cut(s) 36, 430
Eco57I CTGAAG 1 cut(s) 293
EcoNI CCTNNNNNAGG 1 cut(s) 229
EcoT22I ATGCAT 1 cut(s) 118
FaeI CATG 4 cut(s) 116, 120, 178, 386
FaqI GGGAC 1 cut(s) 58
FatI CATG 4 cut(s) 112, 116, 174, 382
Fnu4HI GCNGC 3 cut(s) 138, 242, 452
FokI GGATG 1 cut(s) 133
Fsp4HI GCNGC 3 cut(s) 138, 242, 452
FspBI CTAG 1 cut(s) 413
GluI GCNGC 3 cut(s) 138, 242, 452
GsaI CCCAGC 1 cut(s) 209
HaeIII GGCC 2 cut(s) 52, 392
Hin1II CATG 4 cut(s) 116, 120, 178, 386
HinfI GANTC 2 cut(s) 171, 283
HphI GGTGA 1 cut(s) 142
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 2 cut(s) 16, 435
Hpy188III TCNNGA 3 cut(s) 166, 175, 311
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 368
HpyCH4V TGCA 2 cut(s) 116, 268
HpyF10VI GCNNNNNNNGC 2 cut(s) 84, 313
HpyF3I CTNAG 3 cut(s) 15, 58, 434
Hsp92II CATG 4 cut(s) 116, 120, 178, 386
Kzo9I GATC 2 cut(s) 36, 430
LmnI GCTCC 1 cut(s) 313
LpnPI CCDG 4 cut(s) 191, 230, 296, 452
Lsp1109I GCAGC 2 cut(s) 149, 253
LweI GCATC 1 cut(s) 325
MaeI CTAG 1 cut(s) 413
MaeIII GTNAC 1 cut(s) 423
MalI GATC 2 cut(s) 38, 432
MboI GATC 2 cut(s) 36, 430
MboII GAAGA 1 cut(s) 354
MluCI AATT 3 cut(s) 9, 270, 462
MnlI CCTC 4 cut(s) 126, 225, 231, 268
Mph1103I ATGCAT 1 cut(s) 118
MroXI GAANNNNTTC 1 cut(s) 161
MseI TTAA 3 cut(s) 8, 20, 333
MspA1I CMGCKG 1 cut(s) 244
MwoI GCNNNNNNNGC 2 cut(s) 84, 313
NdeII GATC 2 cut(s) 36, 430
NlaIII CATG 4 cut(s) 116, 120, 178, 386
NsiI ATGCAT 1 cut(s) 118
PagI TCATGA 1 cut(s) 174
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 2 cut(s) 171, 283
PkrI GCNGC 3 cut(s) 139, 243, 453
PshBI ATTAAT 1 cut(s) 8
PspFI CCCAGC 1 cut(s) 205
PvuII CAGCTG 1 cut(s) 244
SaqAI TTAA 3 cut(s) 8, 20, 333
SatI GCNGC 3 cut(s) 138, 242, 452
Sau3AI GATC 2 cut(s) 36, 430
SetI ASST 5 cut(s) 72, 227, 246, 279, 309
SfaNI GCATC 1 cut(s) 325
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
Sse9I AATT 3 cut(s) 9, 270, 462
SsiI CCGC 1 cut(s) 451
SspMI CTAG 1 cut(s) 413
TaqI TCGA 2 cut(s) 261, 286
TasI AATT 3 cut(s) 9, 270, 462
TauI GCSGC 1 cut(s) 454
TfiI GAWTC 2 cut(s) 171, 283
Tru1I TTAA 3 cut(s) 8, 20, 333
Tru9I TTAA 3 cut(s) 8, 20, 333
TseI GCWGC 2 cut(s) 137, 241
TspDTI ATGAA 1 cut(s) 101
VspI ATTAAT 1 cut(s) 8
XagI CCTNNNNNAGG 1 cut(s) 229
XapI RAATTY 1 cut(s) 462
XmnI GAANNNNTTC 1 cut(s) 161
XspI CTAG 1 cut(s) 413
Zsp2I ATGCAT 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.