pycom16g26200

psbP domain-containing protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0009272
Physical Location & Seq
Forward (+)
28486505 .. 28488740
2236 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 984 bp
ATGTCCCGATTCGATTTTAGAGCTGAAATAAACGAGAAGAAGGCGGAAGGCAATCTAAAAGGCATGGCGTGCGTTGCGTCCTGGTATTCTCTGCCTCCGGTGCGACCTCGCACATGCCACTCCAACGCCTTCTCGAACAACAGAGGCATCGCCGTACGCAGTAGAAAAAGCCATGCGCTCCTGCAATGTTGCGAAAACAAACAAGAAAAAACCGACGCCAAAACAGAAACATGTTTTGGCATTGAATTCCAATCTACGAGGAGACAAGTTGTGCTTGGGACGGCGTTTGCTGCATTTTCTTTTCCCCATCTCATTTCAAATGCATTTGCAGAGAATGATGTGCCGGAGGGTTTTCGAGTTTACACTGATGATGTCAATAAGTTCAAGATATTGATTCCCCAAGACTGGCAAGTAGGCGCAGGAGAGCCAACTGGGTTTAAATCAGTCACAGCTTTCTACCCAGAACAAGAGGGTAATAGCTCAAGTGGTCTTTCTGGGGCTGCTGCTTCAGTTAGCGTTGTGATCACGGGGCTTGGTCCGGATTTTACAAAGATGGAATCCTTTGGTAAAGTTGAAGCGTTTGCTGAGACTCTGGTTAGTGGATTGGATAGGAGCTGGCAAAGGCCAGCAGGAGTGGCAGCAAAGCTTATAGATTGCAAAGCATCGAAAGGCCTTTACTTCATCGAGTATTCGCTACAAAAACCCGGTGAAAGTTGCAAGCACCTGTTTTCAGCACTTGGGATGGCAACCAACGGTTGGTACAACAGACTGTATACAGTCACCGGACAGTACGTCGAGGAAGAATCAGATAAATACAGCGCCAATGTTAAGGAGGTCAGCTTAAAACGAAACGTTACGCTGTCAAATCCTTCAGGTTCATTTGAGGGCTCCAGCCAGAGTTTGAAACTACAGTTTTACGCCGATTTTGATTGTCAGTACGGTCAGTATTTCGTGCTTCTAACTGGTAGATACATAGCAAATTGA

Protein Analysis

328

Amino Acids

36.11

Weight (kDa)

8.03

Isoelectric Point (pI)

41.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 116 - 279 4.5e-25 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 756
AccI GTMKAC 1 cut(s) 773
AccIII TCCGGA 1 cut(s) 538
AciI CCGC 1 cut(s) 44
AclI AACGTT 1 cut(s) 852
AcsI RAATTY 1 cut(s) 245
AcuI CTGAAG 2 cut(s) 492, 855
AcyI GRCGYC 1 cut(s) 216
AfaI GTAC 4 cut(s) 156, 761, 791, 938
AfiI CCNNNNNNNGG 2 cut(s) 405, 756
AflIII ACRYGT 1 cut(s) 230
AgsI TTSAA 5 cut(s) 245, 318, 385, 575, 904
AhdI GACNNNNNGTC 1 cut(s) 791
AjnI CCWGG 1 cut(s) 80
AjuI GAANNNNNNNTTGG 2 cut(s) 219, 251
AluBI AGCT 6 cut(s) 23, 452, 480, 615, 646, 840
AluI AGCT 6 cut(s) 23, 452, 480, 615, 646, 840
Alw26I GTCTC 2 cut(s) 256, 581
Aor13HI TCCGGA 1 cut(s) 538
AoxI GGCC 2 cut(s) 623, 670
ApeKI GCWGC 4 cut(s) 290, 500, 503, 638
ApoI RAATTY 1 cut(s) 245
AspLEI GCGC 3 cut(s) 178, 419, 821
AspS9I GGNCC 1 cut(s) 536
AsuC2I CCSGG 1 cut(s) 705
AsuHPI GGTGA 2 cut(s) 719, 772
AvaII GGWCC 1 cut(s) 536
BanII GRGCYC 1 cut(s) 890
BbvI GCAGC 4 cut(s) 277, 487, 490, 650
BccI CCATC 3 cut(s) 315, 547, 736
BceAI ACGGC 2 cut(s) 137, 297
BciT130I CCWGG 1 cut(s) 82
BclI TGATCA 1 cut(s) 522
BcnI CCSGG 1 cut(s) 705
BcoDI GTCTC 2 cut(s) 256, 581
BfmI CTRYAG 1 cut(s) 908
BfoI RGCGCY 1 cut(s) 822
BisI GCNGC 4 cut(s) 291, 501, 504, 639
BlsI GCNGC 4 cut(s) 292, 502, 505, 640
Bme1390I CCNGG 2 cut(s) 82, 705
Bme18I GGWCC 1 cut(s) 536
BmeRI GACNNNNNGTC 1 cut(s) 791
BmgT120I GGNCC 1 cut(s) 536
BmiI GGNNCC 1 cut(s) 889
BmrFI CCNGG 2 cut(s) 82, 705
BmrI ACTGGG 1 cut(s) 441
BmsI GCATC 2 cut(s) 156, 671
BmuI ACTGGG 1 cut(s) 441
BpmI CTGGAG 1 cut(s) 874
BpuEI CTTGAG 1 cut(s) 466
BpuMI CCSGG 1 cut(s) 705
BsaHI GRCGYC 1 cut(s) 216
BsaWI WCCGGW 3 cut(s) 97, 538, 782
Bsc4I CCNNNNNNNGG 2 cut(s) 405, 756
Bse1I ACTGG 3 cut(s) 410, 436, 967
Bse3DI GCAATG 1 cut(s) 191
BseAI TCCGGA 1 cut(s) 538
BseBI CCWGG 1 cut(s) 82
BseGI GGATG 1 cut(s) 747
BseLI CCNNNNNNNGG 2 cut(s) 405, 756
BseMI GCAATG 1 cut(s) 191
BseMII CTCAG 1 cut(s) 576
BseNI ACTGG 3 cut(s) 410, 436, 967
BseRI GAGGAG 1 cut(s) 274
BseXI GCAGC 4 cut(s) 277, 487, 490, 650
BshFI GGCC 2 cut(s) 625, 672
BsiSI CCGG 5 cut(s) 98, 344, 539, 705, 783
BsiWI CGTACG 1 cut(s) 154
BslFI GGGAC 1 cut(s) 292
BslI CCNNNNNNNGG 2 cut(s) 405, 756
BsmAI GTCTC 2 cut(s) 256, 581
BsmFI GGGAC 1 cut(s) 292
BsnI GGCC 2 cut(s) 625, 672
Bsp1286I GDGCHC 1 cut(s) 890
Bsp13I TCCGGA 1 cut(s) 538
Bsp143I GATC 1 cut(s) 522
BspACI CCGC 1 cut(s) 44
BspANI GGCC 2 cut(s) 625, 672
BspCNI CTCAG 1 cut(s) 577
BspEI TCCGGA 1 cut(s) 538
BspLI GGNNCC 1 cut(s) 889
BsrDI GCAATG 1 cut(s) 191
BsrI ACTGG 3 cut(s) 410, 436, 967
BssMI GATC 1 cut(s) 522
BssNAI GTATAC 1 cut(s) 774
BssNI GRCGYC 1 cut(s) 216
Bst1107I GTATAC 1 cut(s) 774
Bst2UI CCWGG 1 cut(s) 82
Bst4CI ACNGT 6 cut(s) 755, 771, 778, 789, 912, 941
BstACI GRCGYC 1 cut(s) 216
BstAPI GCANNNNNTGC 1 cut(s) 69
BstC8I GCNNGC 4 cut(s) 70, 617, 627, 719
BstDEI CTNAG 1 cut(s) 585
BstF5I GGATG 1 cut(s) 747
BstH2I RGCGCY 1 cut(s) 822
BstHHI GCGC 3 cut(s) 178, 419, 821
BstKTI GATC 1 cut(s) 525
BstMAI GTCTC 2 cut(s) 256, 581
BstMBI GATC 1 cut(s) 522
BstMWI GCNNNNNNNGC 5 cut(s) 69, 74, 100, 290, 635
BstNI CCWGG 1 cut(s) 82
BstNSI RCATGY 2 cut(s) 117, 234
BstSCI CCNGG 2 cut(s) 80, 703
BstSFI CTRYAG 1 cut(s) 908
BstV1I GCAGC 4 cut(s) 277, 487, 490, 650
BstZ17I GTATAC 1 cut(s) 774
BsuRI GGCC 2 cut(s) 625, 672
BtgZI GCGATG 1 cut(s) 133
BtsCI GGATG 1 cut(s) 747
BtsIMutI CAGTG 1 cut(s) 363
Cac8I GCNNGC 4 cut(s) 70, 617, 627, 719
CfoI GCGC 3 cut(s) 178, 419, 821
Cfr13I GGNCC 1 cut(s) 536
CseI GACGC 2 cut(s) 66, 224
Csp6I GTAC 4 cut(s) 155, 760, 790, 937
CviAII CATG 4 cut(s) 64, 114, 173, 231
CviQI GTAC 4 cut(s) 155, 760, 790, 937
DdeI CTNAG 1 cut(s) 585
DpnI GATC 1 cut(s) 524
DpnII GATC 1 cut(s) 522
DraI TTTAAA 1 cut(s) 439
DriI GACNNNNNGTC 1 cut(s) 791
Eam1105I GACNNNNNGTC 1 cut(s) 791
EciI GGCGGA 1 cut(s) 59
Eco147I AGGCCT 1 cut(s) 672
Eco24I GRGCYC 1 cut(s) 890
Eco47I GGWCC 1 cut(s) 536
Eco57I CTGAAG 2 cut(s) 492, 855
EcoRI GAATTC 1 cut(s) 245
EcoRII CCWGG 1 cut(s) 80
EcoT22I ATGCAT 1 cut(s) 325
EcoT38I GRGCYC 1 cut(s) 890
FaeI CATG 4 cut(s) 67, 117, 176, 234
FaiI YATR 7 cut(s) 65, 115, 174, 232, 650, 774, 974
FalI AAGNNNNNCTT 2 cut(s) 258, 290
FaqI GGGAC 1 cut(s) 292
FatI CATG 4 cut(s) 63, 113, 172, 230
FbaI TGATCA 1 cut(s) 522
FblI GTMKAC 1 cut(s) 773
Fnu4HI GCNGC 4 cut(s) 291, 501, 504, 639
FokI GGATG 1 cut(s) 754
FriOI GRGCYC 1 cut(s) 890
Fsp4HI GCNGC 4 cut(s) 291, 501, 504, 639
GlaI GCGC 3 cut(s) 177, 418, 820
GluI GCNGC 4 cut(s) 291, 501, 504, 639
GsuI CTGGAG 1 cut(s) 874
HaeII RGCGCY 1 cut(s) 822
HaeIII GGCC 2 cut(s) 625, 672
HapII CCGG 5 cut(s) 98, 344, 539, 705, 783
HgaI GACGC 2 cut(s) 66, 224
HhaI GCGC 3 cut(s) 178, 419, 821
Hin1I GRCGYC 1 cut(s) 216
Hin1II CATG 4 cut(s) 67, 117, 176, 234
Hin6I GCGC 3 cut(s) 176, 417, 819
HinP1I GCGC 3 cut(s) 176, 417, 819
HindIII AAGCTT 1 cut(s) 644
HinfI GANTC 5 cut(s) 9, 394, 557, 589, 803
HpaII CCGG 5 cut(s) 98, 344, 539, 705, 783
HphI GGTGA 2 cut(s) 719, 772
Hpy166II GTNNAC 2 cut(s) 361, 774
Hpy188I TCNGA 1 cut(s) 808
Hpy188III TCNNGA 4 cut(s) 6, 133, 385, 539
Hpy8I GTNNAC 2 cut(s) 361, 774
Hpy99I CGWCG 2 cut(s) 218, 797
HpyAV CCTTC 4 cut(s) 34, 41, 139, 879
HpyCH4III ACNGT 6 cut(s) 755, 771, 778, 789, 912, 941
HpyCH4IV ACGT 2 cut(s) 792, 852
HpyCH4V TGCA 6 cut(s) 184, 293, 323, 329, 657, 717
HpyF10VI GCNNNNNNNGC 5 cut(s) 69, 74, 100, 290, 635
HpyF3I CTNAG 1 cut(s) 585
HpySE526I ACGT 2 cut(s) 792, 852
Hsp92I GRCGYC 1 cut(s) 216
Hsp92II CATG 4 cut(s) 67, 117, 176, 234
HspAI GCGC 3 cut(s) 176, 417, 819
Kpn2I TCCGGA 1 cut(s) 538
Ksp22I TGATCA 1 cut(s) 522
Kzo9I GATC 1 cut(s) 522
LmnI GCTCC 3 cut(s) 183, 612, 893
Lsp1109I GCAGC 4 cut(s) 277, 487, 490, 650
LweI GCATC 2 cut(s) 156, 671
MaeII ACGT 2 cut(s) 792, 852
MaeIII GTNAC 3 cut(s) 445, 778, 853
MalI GATC 1 cut(s) 524
MboI GATC 1 cut(s) 522
MboII GAAGA 2 cut(s) 49, 812
MhlI GDGCHC 1 cut(s) 890
MluCI AATT 2 cut(s) 245, 979
MlyI GAGTC 1 cut(s) 583
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 9 cut(s) 105, 117, 137, 252, 340, 463, 790, 826, 877
Mph1103I ATGCAT 1 cut(s) 325
MroI TCCGGA 1 cut(s) 538
MseI TTAA 3 cut(s) 438, 828, 842
MspI CCGG 5 cut(s) 98, 344, 539, 705, 783
MspR9I CCNGG 2 cut(s) 82, 705
MvaI CCWGG 1 cut(s) 82
MwoI GCNNNNNNNGC 5 cut(s) 69, 74, 100, 290, 635
NciI CCSGG 1 cut(s) 705
NdeII GATC 1 cut(s) 522
NlaIII CATG 4 cut(s) 67, 117, 176, 234
NlaIV GGNNCC 1 cut(s) 889
NmuCI GTSAC 2 cut(s) 445, 778
NsiI ATGCAT 1 cut(s) 325
NspI RCATGY 2 cut(s) 117, 234
PceI AGGCCT 1 cut(s) 672
PciI ACATGT 1 cut(s) 230
PfeI GAWTC 4 cut(s) 9, 394, 557, 803
Pfl23II CGTACG 1 cut(s) 154
PflMI CCANNNNNTGG 1 cut(s) 756
PkrI GCNGC 4 cut(s) 292, 502, 505, 640
PleI GAGTC 1 cut(s) 583
PpsI GAGTC 1 cut(s) 583
PscI ACATGT 1 cut(s) 230
Psp1406I AACGTT 1 cut(s) 852
Psp6I CCWGG 1 cut(s) 80
PspGI CCWGG 1 cut(s) 80
PspLI CGTACG 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 889
PspPI GGNCC 1 cut(s) 536
RsaI GTAC 4 cut(s) 156, 761, 791, 938
RsaNI GTAC 4 cut(s) 155, 760, 790, 937
SaqAI TTAA 3 cut(s) 438, 828, 842
SatI GCNGC 4 cut(s) 291, 501, 504, 639
Sau3AI GATC 1 cut(s) 522
Sau96I GGNCC 1 cut(s) 536
SchI GAGTC 1 cut(s) 583
ScrFI CCNGG 2 cut(s) 82, 705
SduI GDGCHC 1 cut(s) 890
SfaNI GCATC 2 cut(s) 156, 671
SfcI CTRYAG 1 cut(s) 908
SinI GGWCC 1 cut(s) 536
SmlI CTYRAG 1 cut(s) 481
SmoI CTYRAG 1 cut(s) 481
Sse9I AATT 2 cut(s) 245, 979
SseBI AGGCCT 1 cut(s) 672
SsiI CCGC 1 cut(s) 44
StuI AGGCCT 1 cut(s) 672
StyD4I CCNGG 2 cut(s) 80, 703
TaaI ACNGT 6 cut(s) 755, 771, 778, 789, 912, 941
TaiI ACGT 2 cut(s) 795, 855
TaqI TCGA 6 cut(s) 12, 134, 355, 665, 684, 795
TasI AATT 2 cut(s) 245, 979
TfiI GAWTC 4 cut(s) 9, 394, 557, 803
Tru1I TTAA 3 cut(s) 438, 828, 842
Tru9I TTAA 3 cut(s) 438, 828, 842
TscAI CASTG 1 cut(s) 370
TseFI GTSAC 2 cut(s) 445, 778
TseI GCWGC 4 cut(s) 290, 500, 503, 638
Tsp45I GTSAC 2 cut(s) 445, 778
TspDTI ATGAA 2 cut(s) 670, 867
TspRI CASTG 1 cut(s) 370
Van91I CCANNNNNTGG 1 cut(s) 756
VpaK11BI GGWCC 1 cut(s) 536
XapI RAATTY 1 cut(s) 245
XceI RCATGY 2 cut(s) 117, 234
XmiI GTMKAC 1 cut(s) 773
Zsp2I ATGCAT 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.