Squamosa promoter-binding-like protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G20980 AT1G76580 AT1G76580 AT1G76580 |
| fragaria_vesca | FvH4_5g26510 FvH4_5g26510 FvH4_5g26510 FvH4_5g26510 |
| malus_domestica | MD00G1031600.v1.1 MD06G1001500.v1.1 |
| prunus_persica | Prupe.5G002300_v2.0.a1 |
| pyrus_communis | pycom06g00160 pycom16g26290 |
| rosa_chinensis | RchiOBHm_Chr7g0217411 |
| rosa_laevigata | RLG00000002479 |
| rosa_multiflora | Rmu_sc0000145.1_g000013 |
| rosa_roxburghii | Rroxscaffold_3G00242100 |
| rosa_rugosa | Rorug07G0169000 |
| rosa_samantha | Rh7AG308600 Rh7BG299300 Rh7CG328000 Rh7DG307900 |
| rosa_wichuraiana | Rw7G026170 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2889 |
| AarI | CACCTGC | 1 cut(s) | 1789 |
| Acc16I | TGCGCA | 2 cut(s) | 1611, 1682 |
| Acc36I | ACCTGC | 3 cut(s) | 573, 1106, 1789 |
| AccB1I | GGYRCC | 1 cut(s) | 2054 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 710 |
| AccI | GTMKAC | 1 cut(s) | 628 |
| AccII | CGCG | 3 cut(s) | 96, 150, 3007 |
| AciI | CCGC | 7 cut(s) | 15, 311, 496, 641, 2353, 2795, 3050 |
| AclI | AACGTT | 1 cut(s) | 183 |
| AclWI | GGATC | 5 cut(s) | 418, 1623, 1649, 1662, 3003 |
| AcoI | YGGCCR | 3 cut(s) | 16, 78, 2354 |
| AcsI | RAATTY | 6 cut(s) | 856, 1924, 2038, 2160, 2468, 3208 |
| AcuI | CTGAAG | 4 cut(s) | 320, 821, 1545, 3080 |
| AfaI | GTAC | 6 cut(s) | 250, 1002, 1180, 1931, 2761, 3034 |
| AflIII | ACRYGT | 1 cut(s) | 2088 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 506 |
| AjiI | CACGTC | 1 cut(s) | 2091 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1279, 1311, 2813, 2845 |
| AleI | CACNNNNGTG | 1 cut(s) | 365 |
| Alw21I | GWGCWC | 1 cut(s) | 3085 |
| Alw26I | GTCTC | 2 cut(s) | 628, 1197 |
| Alw44I | GTGCAC | 1 cut(s) | 3081 |
| AlwI | GGATC | 5 cut(s) | 418, 1623, 1649, 1662, 3003 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 145, 1409, 1850, 2602 |
| Ama87I | CYCGRG | 1 cut(s) | 1230 |
| AoxI | GGCC | 9 cut(s) | 16, 58, 78, 112, 293, 1739, 1983, 2354, 2806 |
| ApaI | GGGCCC | 1 cut(s) | 116 |
| ApaLI | GTGCAC | 1 cut(s) | 3081 |
| ApoI | RAATTY | 6 cut(s) | 856, 1924, 2038, 2160, 2468, 3208 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2519, 2551 |
| AseI | ATTAAT | 1 cut(s) | 2652 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2376 |
| AspLEI | GCGC | 5 cut(s) | 96, 150, 1451, 1612, 1683 |
| AsuC2I | CCSGG | 4 cut(s) | 162, 292, 417, 2609 |
| AsuHPI | GGTGA | 7 cut(s) | 35, 92, 352, 581, 1257, 1341, 1581 |
| AvaI | CYCGRG | 1 cut(s) | 1230 |
| AvaII | GGWCC | 6 cut(s) | 387, 400, 1118, 1582, 2278, 2714 |
| BaeGI | GKGCMC | 3 cut(s) | 116, 384, 3085 |
| BamHI | GGATCC | 1 cut(s) | 1654 |
| BanI | GGYRCC | 1 cut(s) | 2054 |
| BanII | GRGCYC | 3 cut(s) | 116, 378, 3170 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 958, 990 |
| Bbv12I | GWGCWC | 1 cut(s) | 3085 |
| BccI | CCATC | 4 cut(s) | 1723, 1907, 2394, 2629 |
| BceAI | ACGGC | 3 cut(s) | 324, 707, 2445 |
| BcnI | CCSGG | 4 cut(s) | 162, 292, 417, 2609 |
| BcoDI | GTCTC | 2 cut(s) | 628, 1197 |
| BfaI | CTAG | 8 cut(s) | 638, 915, 1016, 1302, 1596, 2396, 2525, 2838 |
| BfmI | CTRYAG | 4 cut(s) | 975, 1462, 2263, 2661 |
| BfuAI | ACCTGC | 3 cut(s) | 573, 1106, 1789 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1991 |
| BglII | AGATCT | 2 cut(s) | 469, 943 |
| Bme18I | GGWCC | 6 cut(s) | 387, 400, 1118, 1582, 2278, 2714 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 506 |
| BmeT110I | CYCGRG | 1 cut(s) | 1230 |
| BmgBI | CACGTC | 1 cut(s) | 2091 |
| BmiI | GGNNCC | 9 cut(s) | 114, 115, 375, 401, 1120, 1656, 1986, 2056, 3169 |
| BmrI | ACTGGG | 1 cut(s) | 202 |
| BmuI | ACTGGG | 1 cut(s) | 202 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 816, 848, 1961, 1993 |
| BpmI | CTGGAG | 3 cut(s) | 1014, 1950, 3008 |
| BpuEI | CTTGAG | 2 cut(s) | 2303, 3181 |
| BpuMI | CCSGG | 4 cut(s) | 162, 292, 417, 2609 |
| Bsa29I | ATCGAT | 1 cut(s) | 1950 |
| BsaAI | YACGTR | 1 cut(s) | 2073 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1653 |
| BsaWI | WCCGGW | 2 cut(s) | 402, 651 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1012, 1042, 2562, 2592 |
| Bse118I | RCCGGY | 3 cut(s) | 11, 60, 76 |
| Bse1I | ACTGG | 8 cut(s) | 176, 197, 1189, 1296, 1824, 1891, 2110, 2237 |
| Bse3DI | GCAATG | 3 cut(s) | 1050, 1676, 2065 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1653 |
| BseCI | ATCGAT | 1 cut(s) | 1950 |
| BseGI | GGATG | 3 cut(s) | 2405, 2770, 2839 |
| BseJI | GATNNNNATC | 1 cut(s) | 1653 |
| BseMI | GCAATG | 3 cut(s) | 1050, 1676, 2065 |
| BseMII | CTCAG | 6 cut(s) | 1260, 1329, 1410, 2292, 2470, 2984 |
| BseNI | ACTGG | 8 cut(s) | 176, 197, 1189, 1296, 1824, 1891, 2110, 2237 |
| BseRI | GAGGAG | 3 cut(s) | 386, 634, 1252 |
| BseSI | GKGCMC | 3 cut(s) | 116, 384, 3085 |
| BseX3I | CGGCCG | 1 cut(s) | 2354 |
| BseYI | CCCAGC | 1 cut(s) | 1160 |
| BsgI | GTGCAG | 2 cut(s) | 598, 1081 |
| Bsh1236I | CGCG | 3 cut(s) | 96, 150, 3007 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2357 |
| BshFI | GGCC | 9 cut(s) | 18, 60, 80, 114, 295, 1741, 1985, 2356, 2808 |
| BshNI | GGYRCC | 1 cut(s) | 2054 |
| BshVI | ATCGAT | 1 cut(s) | 1950 |
| BsiEI | CGRYCG | 1 cut(s) | 2357 |
| BsiHKAI | GWGCWC | 1 cut(s) | 3085 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1230 |
| BsiSI | CCGG | 9 cut(s) | 12, 61, 77, 162, 291, 403, 416, 652, 2608 |
| BslFI | GGGAC | 5 cut(s) | 203, 209, 1104, 1687, 3087 |
| BsmAI | GTCTC | 2 cut(s) | 628, 1197 |
| BsmFI | GGGAC | 5 cut(s) | 203, 209, 1104, 1687, 3087 |
| BsnI | GGCC | 9 cut(s) | 18, 60, 80, 114, 295, 1741, 1985, 2356, 2808 |
| BsoBI | CYCGRG | 1 cut(s) | 1230 |
| Bsp120I | GGGCCC | 1 cut(s) | 112 |
| Bsp1286I | GDGCHC | 5 cut(s) | 116, 378, 384, 3085, 3170 |
| Bsp19I | CCATGG | 3 cut(s) | 81, 984, 1197 |
| BspACI | CCGC | 7 cut(s) | 15, 311, 496, 641, 2353, 2795, 3050 |
| BspANI | GGCC | 9 cut(s) | 18, 60, 80, 114, 295, 1741, 1985, 2356, 2808 |
| BspCNI | CTCAG | 6 cut(s) | 1261, 1330, 1411, 2293, 2469, 2983 |
| BspDI | ATCGAT | 1 cut(s) | 1950 |
| BspFNI | CGCG | 3 cut(s) | 96, 150, 3007 |
| BspHI | TCATGA | 2 cut(s) | 2164, 2341 |
| BspLI | GGNNCC | 9 cut(s) | 114, 115, 375, 401, 1120, 1656, 1986, 2056, 3169 |
| BspMAI | CTGCAG | 1 cut(s) | 2267 |
| BspMI | ACCTGC | 3 cut(s) | 573, 1106, 1789 |
| BspPI | GGATC | 5 cut(s) | 418, 1623, 1649, 1662, 3003 |
| BspQI | GCTCTTC | 1 cut(s) | 2411 |
| BspT107I | GGYRCC | 1 cut(s) | 2054 |
| BsrDI | GCAATG | 3 cut(s) | 1050, 1676, 2065 |
| BsrFI | RCCGGY | 3 cut(s) | 11, 60, 76 |
| BsrI | ACTGG | 8 cut(s) | 176, 197, 1189, 1296, 1824, 1891, 2110, 2237 |
| BssAI | RCCGGY | 3 cut(s) | 11, 60, 76 |
| BssT1I | CCWWGG | 4 cut(s) | 81, 483, 984, 1197 |
| Bst6I | CTCTTC | 6 cut(s) | 611, 1321, 1388, 2025, 2411, 2739 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 145, 881, 1025 |
| BstBAI | YACGTR | 1 cut(s) | 2073 |
| BstDEI | CTNAG | 9 cut(s) | 845, 1089, 1269, 1338, 1419, 2301, 2456, 2970, 3184 |
| BstDSI | CCRYGG | 3 cut(s) | 81, 984, 1197 |
| BstEII | GGTNACC | 1 cut(s) | 1347 |
| BstF5I | GGATG | 3 cut(s) | 2405, 2770, 2839 |
| BstFNI | CGCG | 3 cut(s) | 96, 150, 3007 |
| BstHHI | GCGC | 5 cut(s) | 96, 150, 1451, 1612, 1683 |
| BstMAI | GTCTC | 2 cut(s) | 628, 1197 |
| BstMCI | CGRYCG | 1 cut(s) | 2357 |
| BstNSI | RCATGY | 4 cut(s) | 1489, 1823, 1936, 2596 |
| BstPI | GGTNACC | 1 cut(s) | 1347 |
| BstSFI | CTRYAG | 4 cut(s) | 975, 1462, 2263, 2661 |
| BstSLI | GKGCMC | 3 cut(s) | 116, 384, 3085 |
| BstUI | CGCG | 3 cut(s) | 96, 150, 3007 |
| BstX2I | RGATCY | 4 cut(s) | 410, 469, 943, 1654 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 186, 223, 1115, 1831 |
| BstYI | RGATCY | 4 cut(s) | 410, 469, 943, 1654 |
| BstZI | CGGCCG | 1 cut(s) | 2354 |
| Bsu15I | ATCGAT | 1 cut(s) | 1950 |
| BsuRI | GGCC | 9 cut(s) | 18, 60, 80, 114, 295, 1741, 1985, 2356, 2808 |
| BsuTUI | ATCGAT | 1 cut(s) | 1950 |
| BtgI | CCRYGG | 3 cut(s) | 81, 984, 1197 |
| BtrI | CACGTC | 1 cut(s) | 2091 |
| BtsCI | GGATG | 3 cut(s) | 2405, 2770, 2839 |
| BtsI | GCAGTG | 2 cut(s) | 581, 1078 |
| BtsIMutI | CAGTG | 9 cut(s) | 581, 1078, 1084, 1335, 1379, 2244, 2295, 2491, 2560 |
| BveI | ACCTGC | 3 cut(s) | 573, 1106, 1789 |
| CaiI | CAGNNNCTG | 4 cut(s) | 145, 1409, 1850, 2602 |
| CciI | TCATGA | 2 cut(s) | 2164, 2341 |
| CfoI | GCGC | 5 cut(s) | 96, 150, 1451, 1612, 1683 |
| Cfr10I | RCCGGY | 3 cut(s) | 11, 60, 76 |
| ClaI | ATCGAT | 1 cut(s) | 1950 |
| CseI | GACGC | 5 cut(s) | 58, 139, 206, 1890, 3089 |
| CsiI | ACCWGGT | 1 cut(s) | 1809 |
| Csp6I | GTAC | 6 cut(s) | 249, 1001, 1179, 1930, 2760, 3033 |
| CviQI | GTAC | 6 cut(s) | 249, 1001, 1179, 1930, 2760, 3033 |
| DdeI | CTNAG | 9 cut(s) | 845, 1089, 1269, 1338, 1419, 2301, 2456, 2970, 3184 |
| DriI | GACNNNNNGTC | 1 cut(s) | 506 |
| EaeI | YGGCCR | 3 cut(s) | 16, 78, 2354 |
| EagI | CGGCCG | 1 cut(s) | 2354 |
| Eam1104I | CTCTTC | 6 cut(s) | 611, 1321, 1388, 2025, 2411, 2739 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 506 |
| EarI | CTCTTC | 6 cut(s) | 611, 1321, 1388, 2025, 2411, 2739 |
| EciI | GGCGGA | 1 cut(s) | 326 |
| EclXI | CGGCCG | 1 cut(s) | 2354 |
| Eco130I | CCWWGG | 4 cut(s) | 81, 483, 984, 1197 |
| Eco147I | AGGCCT | 1 cut(s) | 1741 |
| Eco24I | GRGCYC | 3 cut(s) | 116, 378, 3170 |
| Eco47I | GGWCC | 6 cut(s) | 387, 400, 1118, 1582, 2278, 2714 |
| Eco52I | CGGCCG | 1 cut(s) | 2354 |
| Eco57I | CTGAAG | 4 cut(s) | 320, 821, 1545, 3080 |
| Eco88I | CYCGRG | 1 cut(s) | 1230 |
| Eco91I | GGTNACC | 1 cut(s) | 1347 |
| EcoO109I | RGGNCCY | 3 cut(s) | 112, 113, 2278 |
| EcoO65I | GGTNACC | 1 cut(s) | 1347 |
| EcoT14I | CCWWGG | 4 cut(s) | 81, 483, 984, 1197 |
| EcoT22I | ATGCAT | 1 cut(s) | 2173 |
| EcoT38I | GRGCYC | 3 cut(s) | 116, 378, 3170 |
| ErhI | CCWWGG | 4 cut(s) | 81, 483, 984, 1197 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 3078, 3110 |
| FaqI | GGGAC | 5 cut(s) | 203, 209, 1104, 1687, 3087 |
| FauI | CCCGC | 2 cut(s) | 634, 2802 |
| FblI | GTMKAC | 1 cut(s) | 628 |
| FokI | GGATG | 3 cut(s) | 2412, 2777, 2846 |
| FriOI | GRGCYC | 3 cut(s) | 116, 378, 3170 |
| FspBI | CTAG | 8 cut(s) | 638, 915, 1016, 1302, 1596, 2396, 2525, 2838 |
| FspI | TGCGCA | 2 cut(s) | 1611, 1682 |
| GlaI | GCGC | 5 cut(s) | 95, 149, 1450, 1611, 1682 |
| GsaI | CCCAGC | 1 cut(s) | 1164 |
| GsuI | CTGGAG | 3 cut(s) | 1014, 1950, 3008 |
| HaeIII | GGCC | 9 cut(s) | 18, 60, 80, 114, 295, 1741, 1985, 2356, 2808 |
| HapII | CCGG | 9 cut(s) | 12, 61, 77, 162, 291, 403, 416, 652, 2608 |
| HgaI | GACGC | 5 cut(s) | 58, 139, 206, 1890, 3089 |
| HhaI | GCGC | 5 cut(s) | 96, 150, 1451, 1612, 1683 |
| Hin6I | GCGC | 5 cut(s) | 94, 148, 1449, 1610, 1681 |
| HinP1I | GCGC | 5 cut(s) | 94, 148, 1449, 1610, 1681 |
| HincII | GTYRAC | 3 cut(s) | 748, 1095, 2641 |
| HindII | GTYRAC | 3 cut(s) | 748, 1095, 2641 |
| HindIII | AAGCTT | 3 cut(s) | 921, 1939, 2909 |
| HpaII | CCGG | 9 cut(s) | 12, 61, 77, 162, 291, 403, 416, 652, 2608 |
| HphI | GGTGA | 7 cut(s) | 35, 92, 352, 581, 1257, 1341, 1581 |
| Hpy166II | GTNNAC | 6 cut(s) | 629, 748, 773, 1095, 2641, 3083 |
| Hpy8I | GTNNAC | 6 cut(s) | 629, 748, 773, 1095, 2641, 3083 |
| HpyAV | CCTTC | 8 cut(s) | 344, 654, 845, 1362, 1602, 1620, 2269, 2387 |
| HpyCH4IV | ACGT | 4 cut(s) | 183, 681, 2072, 2090 |
| HpyF3I | CTNAG | 9 cut(s) | 845, 1089, 1269, 1338, 1419, 2301, 2456, 2970, 3184 |
| HpySE526I | ACGT | 4 cut(s) | 183, 681, 2072, 2090 |
| HspAI | GCGC | 5 cut(s) | 94, 148, 1449, 1610, 1681 |
| KroI | GCCGGC | 2 cut(s) | 11, 76 |
| KroNI | GCCGGC | 2 cut(s) | 13, 78 |
| LguI | GCTCTTC | 1 cut(s) | 2411 |
| MabI | ACCWGGT | 1 cut(s) | 1809 |
| MaeI | CTAG | 8 cut(s) | 638, 915, 1016, 1302, 1596, 2396, 2525, 2838 |
| MaeII | ACGT | 4 cut(s) | 183, 681, 2072, 2090 |
| MfeI | CAATTG | 3 cut(s) | 1696, 2946, 3045 |
| MflI | RGATCY | 4 cut(s) | 410, 469, 943, 1654 |
| MhlI | GDGCHC | 5 cut(s) | 116, 378, 384, 3085, 3170 |
| MlyI | GAGTC | 3 cut(s) | 221, 2294, 2312 |
| MmeI | TCCRAC | 1 cut(s) | 1731 |
| Mph1103I | ATGCAT | 1 cut(s) | 2173 |
| MreI | CGCCGGCG | 1 cut(s) | 11 |
| MroNI | GCCGGC | 2 cut(s) | 11, 76 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2376 |
| MslI | CAYNNNNRTG | 5 cut(s) | 365, 1911, 2075, 2204, 2346 |
| MspA1I | CMGCKG | 4 cut(s) | 145, 340, 1115, 1160 |
| MspI | CCGG | 9 cut(s) | 12, 61, 77, 162, 291, 403, 416, 652, 2608 |
| MunI | CAATTG | 3 cut(s) | 1696, 2946, 3045 |
| MvnI | CGCG | 3 cut(s) | 96, 150, 3007 |
| NaeI | GCCGGC | 2 cut(s) | 13, 78 |
| NciI | CCSGG | 4 cut(s) | 162, 292, 417, 2609 |
| NcoI | CCATGG | 3 cut(s) | 81, 984, 1197 |
| NgoMIV | GCCGGC | 2 cut(s) | 11, 76 |
| NlaIV | GGNNCC | 9 cut(s) | 114, 115, 375, 401, 1120, 1656, 1986, 2056, 3169 |
| NmuCI | GTSAC | 6 cut(s) | 151, 1073, 1347, 1902, 2672, 2941 |
| NsbI | TGCGCA | 2 cut(s) | 1611, 1682 |
| NsiI | ATGCAT | 1 cut(s) | 2173 |
| NspI | RCATGY | 4 cut(s) | 1489, 1823, 1936, 2596 |
| OliI | CACNNNNGTG | 1 cut(s) | 365 |
| PaeI | GCATGC | 1 cut(s) | 1823 |
| PaeR7I | CTCGAG | 1 cut(s) | 1230 |
| PagI | TCATGA | 2 cut(s) | 2164, 2341 |
| PaqCI | CACCTGC | 1 cut(s) | 1789 |
| PceI | AGGCCT | 1 cut(s) | 1741 |
| PciSI | GCTCTTC | 1 cut(s) | 2411 |
| PdiI | GCCGGC | 2 cut(s) | 13, 78 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2376 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 710 |
| PleI | GAGTC | 3 cut(s) | 221, 2293, 2311 |
| PpsI | GAGTC | 3 cut(s) | 221, 2293, 2311 |
| Ppu21I | YACGTR | 1 cut(s) | 2073 |
| PpuMI | RGGWCCY | 1 cut(s) | 2278 |
| PshBI | ATTAAT | 1 cut(s) | 2652 |
| PsiI | TTATAA | 1 cut(s) | 2889 |
| Psp1406I | AACGTT | 1 cut(s) | 183 |
| Psp5II | RGGWCCY | 1 cut(s) | 2278 |
| PspEI | GGTNACC | 1 cut(s) | 1347 |
| PspFI | CCCAGC | 1 cut(s) | 1160 |
| PspN4I | GGNNCC | 9 cut(s) | 114, 115, 375, 401, 1120, 1656, 1986, 2056, 3169 |
| PspOMI | GGGCCC | 1 cut(s) | 112 |
| PspPPI | RGGWCCY | 1 cut(s) | 2278 |
| PspXI | VCTCGAGB | 1 cut(s) | 1230 |
| PstI | CTGCAG | 1 cut(s) | 2267 |
| PstNI | CAGNNNCTG | 4 cut(s) | 145, 1409, 1850, 2602 |
| PsuI | RGATCY | 4 cut(s) | 410, 469, 943, 1654 |
| PvuII | CAGCTG | 4 cut(s) | 145, 340, 1115, 1160 |
| RsaI | GTAC | 6 cut(s) | 250, 1002, 1180, 1931, 2761, 3034 |
| RsaNI | GTAC | 6 cut(s) | 249, 1001, 1179, 1930, 2760, 3033 |
| RseI | CAYNNNNRTG | 5 cut(s) | 365, 1911, 2075, 2204, 2346 |
| SapI | GCTCTTC | 1 cut(s) | 2411 |
| SchI | GAGTC | 3 cut(s) | 221, 2294, 2312 |
| SduI | GDGCHC | 5 cut(s) | 116, 378, 384, 3085, 3170 |
| SexAI | ACCWGGT | 1 cut(s) | 1809 |
| SfcI | CTRYAG | 4 cut(s) | 975, 1462, 2263, 2661 |
| Sfr274I | CTCGAG | 1 cut(s) | 1230 |
| SgrAI | CRCCGGYG | 1 cut(s) | 11 |
| SinI | GGWCC | 6 cut(s) | 387, 400, 1118, 1582, 2278, 2714 |
| SlaI | CTCGAG | 1 cut(s) | 1230 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 365, 1911, 2075, 2204, 2346 |
| SmlI | CTYRAG | 3 cut(s) | 1230, 2282, 3160 |
| SmoI | CTYRAG | 3 cut(s) | 1230, 2282, 3160 |
| SphI | GCATGC | 1 cut(s) | 1823 |
| SseBI | AGGCCT | 1 cut(s) | 1741 |
| SsiI | CCGC | 7 cut(s) | 15, 311, 496, 641, 2353, 2795, 3050 |
| SspMI | CTAG | 8 cut(s) | 638, 915, 1016, 1302, 1596, 2396, 2525, 2838 |
| StuI | AGGCCT | 1 cut(s) | 1741 |
| StyI | CCWWGG | 4 cut(s) | 81, 483, 984, 1197 |
| TaiI | ACGT | 4 cut(s) | 186, 684, 2075, 2093 |
| TaqI | TCGA | 5 cut(s) | 606, 1231, 1950, 2490, 2965 |
| TatI | WGTACW | 2 cut(s) | 1000, 1178 |
| TauI | GCSGC | 3 cut(s) | 18, 2356, 3053 |
| TscAI | CASTG | 9 cut(s) | 581, 1078, 1084, 1342, 1386, 2244, 2295, 2491, 2560 |
| TseFI | GTSAC | 6 cut(s) | 151, 1073, 1347, 1902, 2672, 2941 |
| Tsp45I | GTSAC | 6 cut(s) | 151, 1073, 1347, 1902, 2672, 2941 |
| TspGWI | ACGGA | 3 cut(s) | 646, 2777, 2841 |
| TspRI | CASTG | 9 cut(s) | 581, 1078, 1084, 1342, 1386, 2244, 2295, 2491, 2560 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 710 |
| VneI | GTGCAC | 1 cut(s) | 3081 |
| VpaK11BI | GGWCC | 6 cut(s) | 387, 400, 1118, 1582, 2278, 2714 |
| VspI | ATTAAT | 1 cut(s) | 2652 |
| XapI | RAATTY | 6 cut(s) | 856, 1924, 2038, 2160, 2468, 3208 |
| XbaI | TCTAGA | 2 cut(s) | 1301, 2524 |
| XceI | RCATGY | 4 cut(s) | 1489, 1823, 1936, 2596 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1785 |
| XhoI | CTCGAG | 1 cut(s) | 1230 |
| XmiI | GTMKAC | 1 cut(s) | 628 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2376 |
| XspI | CTAG | 8 cut(s) | 638, 915, 1016, 1302, 1596, 2396, 2525, 2838 |
| Zsp2I | ATGCAT | 1 cut(s) | 2173 |