pycom17g00060

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0010445
Physical Location & Seq
Reverse (-)
48028 .. 48678
651 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 651 bp
ATGTTGAAGAAGAAAGTATGTGCAGCATTAGTGAAGCAGATAATAGGTGCGGTAAGCTCAATGGGCAAGGGTAAAACCCTAGAGGCTCTCAAGAGAAAAACCAGGGCCATGAAGGCTCGAATCATCATATTCTCGTTGCTGAGCAACAACAAGTTGGTGATGATCACCTCCATCCCTCACAAGATCCACGCTTTGTTTGGCCACTCTGACGACTCTGATCATCAGCAGCTGGAAGAAGAAGAAGATGATGACGATGATGGTATAATATTAATGTCGTCCCATGAATCCCAGTCCCACCTGCAGCAGCCGCGACCGGTTCATGATAATAATATTATTAGTACTCCAACTGATCATCATAATCACGATCACATTACTACGTTGGAGGACCACGTCGTTGTCAATGATGCAGAAAAGTACCCAGATCTGACCCACTCGCTGTTCGACTCGGACGATGATCAGCTTGGATCCGTGATAGATATTGTCAAGAACTCAAAGCAAGAGGCCGGCCAGGAATTCAGTCTCGAAGAAGAAATAGACCACGTGGCAGACTTGTTCATAAGGAGGTTCCACCGCCAAATCAGAATTCAGAAGCAGCACTCCTTCAAGAGGCACCAGCAGCAGCAGTCGGAGCTCATCCACACTGTTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

217

Amino Acids

24.69

Weight (kDa)

5.94

Isoelectric Point (pI)

57.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 175 - 206 7.8e-11 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 306
Acc36I ACCTGC 1 cut(s) 306
AccB1I GGYRCC 1 cut(s) 609
AccII CGCG 1 cut(s) 310
AciI CCGC 3 cut(s) 50, 308, 571
AclWI GGATC 3 cut(s) 178, 459, 472
AcoI YGGCCR 2 cut(s) 199, 505
AcsI RAATTY 2 cut(s) 512, 582
AcvI CACGTG 1 cut(s) 541
AfaI GTAC 2 cut(s) 340, 416
AfiI CCNNNNNNNGG 1 cut(s) 606
AgeI ACCGGT 1 cut(s) 313
AgsI TTSAA 2 cut(s) 7, 604
AjiI CACGTC 1 cut(s) 391
AjnI CCWGG 2 cut(s) 101, 507
AjuI GAANNNNNNNTTGG 2 cut(s) 567, 599
AluBI AGCT 4 cut(s) 57, 229, 460, 631
AluI AGCT 4 cut(s) 57, 229, 460, 631
Alw21I GWGCWC 1 cut(s) 633
Alw26I GTCTC 1 cut(s) 524
AlwI GGATC 3 cut(s) 178, 459, 472
AlwNI CAGNNNCTG 1 cut(s) 229
AoxI GGCC 4 cut(s) 105, 199, 501, 505
ApeKI GCWGC 7 cut(s) 23, 226, 301, 304, 592, 616, 619
ApoI RAATTY 2 cut(s) 512, 582
AseI ATTAAT 1 cut(s) 269
AsiGI ACCGGT 1 cut(s) 313
AspS9I GGNCC 2 cut(s) 105, 385
AsuHPI GGTGA 2 cut(s) 157, 169
AvaII GGWCC 1 cut(s) 385
BalI TGGCCA 1 cut(s) 201
BamHI GGATCC 1 cut(s) 464
BanI GGYRCC 1 cut(s) 609
BanII GRGCYC 1 cut(s) 633
BbrPI CACGTG 1 cut(s) 541
Bbv12I GWGCWC 1 cut(s) 633
BbvI GCAGC 7 cut(s) 35, 238, 313, 316, 604, 628, 631
BccI CCATC 2 cut(s) 179, 251
BciT130I CCWGG 2 cut(s) 103, 509
BclI TGATCA 4 cut(s) 162, 217, 349, 454
BcoDI GTCTC 1 cut(s) 524
BfaI CTAG 1 cut(s) 80
BfmI CTRYAG 1 cut(s) 299
BfuAI ACCTGC 1 cut(s) 306
BglI GCCNNNNNGGC 1 cut(s) 113
BglII AGATCT 1 cut(s) 421
BisI GCNGC 8 cut(s) 24, 227, 302, 305, 308, 593, 617, 620
BlpI GCTNAGC 1 cut(s) 140
BlsI GCNGC 8 cut(s) 25, 228, 303, 306, 309, 594, 618, 621
BmcAI AGTACT 1 cut(s) 340
Bme1390I CCNGG 2 cut(s) 103, 509
Bme18I GGWCC 1 cut(s) 385
BmgBI CACGTC 1 cut(s) 391
BmgT120I GGNCC 2 cut(s) 105, 385
BmiI GGNNCC 3 cut(s) 466, 566, 611
BmrFI CCNGG 2 cut(s) 103, 509
BmrI ACTGGG 1 cut(s) 283
BmsI GCATC 1 cut(s) 394
BmuI ACTGGG 1 cut(s) 283
Bpu1102I GCTNAGC 1 cut(s) 140
BpuEI CTTGAG 1 cut(s) 74
BsaAI YACGTR 1 cut(s) 541
BsaJI CCNNGG 1 cut(s) 102
BsaWI WCCGGW 1 cut(s) 313
Bsc4I CCNNNNNNNGG 1 cut(s) 606
Bse118I RCCGGY 2 cut(s) 313, 503
Bse1I ACTGG 1 cut(s) 289
BseBI CCWGG 2 cut(s) 103, 509
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 2 cut(s) 171, 633
BseLI CCNNNNNNNGG 1 cut(s) 606
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 1 cut(s) 289
BseXI GCAGC 7 cut(s) 35, 238, 313, 316, 604, 628, 631
BsgI GTGCAG 1 cut(s) 42
Bsh1236I CGCG 1 cut(s) 310
Bsh1285I CGRYCG 1 cut(s) 314
BshFI GGCC 4 cut(s) 107, 201, 503, 507
BshNI GGYRCC 1 cut(s) 609
BshTI ACCGGT 1 cut(s) 313
BsiEI CGRYCG 1 cut(s) 314
BsiHKAI GWGCWC 1 cut(s) 633
BsiSI CCGG 2 cut(s) 314, 504
BslFI GGGAC 2 cut(s) 262, 277
BslI CCNNNNNNNGG 1 cut(s) 606
BsmAI GTCTC 1 cut(s) 524
BsmFI GGGAC 2 cut(s) 262, 277
BsnI GGCC 4 cut(s) 107, 201, 503, 507
Bsp1286I GDGCHC 1 cut(s) 633
Bsp143I GATC 8 cut(s) 162, 183, 217, 349, 364, 421, 454, 464
Bsp1720I GCTNAGC 1 cut(s) 140
BspACI CCGC 3 cut(s) 50, 308, 571
BspANI GGCC 4 cut(s) 107, 201, 503, 507
BspCNI CTCAG 1 cut(s) 132
BspFNI CGCG 1 cut(s) 310
BspHI TCATGA 1 cut(s) 319
BspLI GGNNCC 3 cut(s) 466, 566, 611
BspMAI CTGCAG 1 cut(s) 303
BspMI ACCTGC 1 cut(s) 306
BspPI GGATC 3 cut(s) 178, 459, 472
BspT107I GGYRCC 1 cut(s) 609
BsrFI RCCGGY 2 cut(s) 313, 503
BsrI ACTGG 1 cut(s) 289
BssAI RCCGGY 2 cut(s) 313, 503
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 8 cut(s) 162, 183, 217, 349, 364, 421, 454, 464
Bst2UI CCWGG 2 cut(s) 103, 509
Bst4CI ACNGT 1 cut(s) 643
BstBAI YACGTR 1 cut(s) 541
BstC8I GCNNGC 1 cut(s) 505
BstDEI CTNAG 1 cut(s) 140
BstENI CCTNNNNNAGG 1 cut(s) 604
BstF5I GGATG 2 cut(s) 171, 633
BstFNI CGCG 1 cut(s) 310
BstKTI GATC 8 cut(s) 165, 186, 220, 352, 367, 424, 457, 467
BstMAI GTCTC 1 cut(s) 524
BstMBI GATC 8 cut(s) 162, 183, 217, 349, 364, 421, 454, 464
BstMCI CGRYCG 1 cut(s) 314
BstMWI GCNNNNNNNGC 5 cut(s) 63, 113, 307, 616, 628
BstNI CCWGG 2 cut(s) 103, 509
BstSCI CCNGG 2 cut(s) 101, 507
BstSFI CTRYAG 1 cut(s) 299
BstUI CGCG 1 cut(s) 310
BstV1I GCAGC 7 cut(s) 35, 238, 313, 316, 604, 628, 631
BstX2I RGATCY 3 cut(s) 183, 421, 464
BstYI RGATCY 3 cut(s) 183, 421, 464
BsuRI GGCC 4 cut(s) 107, 201, 503, 507
BtrI CACGTC 1 cut(s) 391
BtsCI GGATG 2 cut(s) 171, 633
BtsIMutI CAGTG 1 cut(s) 639
BveI ACCTGC 1 cut(s) 306
Cac8I GCNNGC 1 cut(s) 505
CaiI CAGNNNCTG 1 cut(s) 229
CciI TCATGA 1 cut(s) 319
Cfr10I RCCGGY 2 cut(s) 313, 503
Cfr13I GGNCC 2 cut(s) 105, 385
Csp6I GTAC 2 cut(s) 339, 415
CspAI ACCGGT 1 cut(s) 313
CviAII CATG 3 cut(s) 109, 281, 320
CviQI GTAC 2 cut(s) 339, 415
DdeI CTNAG 1 cut(s) 140
DpnI GATC 8 cut(s) 164, 185, 219, 351, 366, 423, 456, 466
DpnII GATC 8 cut(s) 162, 183, 217, 349, 364, 421, 454, 464
EaeI YGGCCR 2 cut(s) 199, 505
Ecl136II GAGCTC 1 cut(s) 631
Eco24I GRGCYC 1 cut(s) 633
Eco47I GGWCC 1 cut(s) 385
Eco53kI GAGCTC 1 cut(s) 631
Eco72I CACGTG 1 cut(s) 541
EcoICRI GAGCTC 1 cut(s) 631
EcoNI CCTNNNNNAGG 1 cut(s) 604
EcoRI GAATTC 2 cut(s) 512, 582
EcoRII CCWGG 2 cut(s) 101, 507
EcoT38I GRGCYC 1 cut(s) 633
FaeI CATG 3 cut(s) 112, 284, 323
FaiI YATR 8 cut(s) 19, 110, 128, 263, 282, 321, 357, 557
FaqI GGGAC 2 cut(s) 262, 277
FatI CATG 3 cut(s) 108, 280, 319
FbaI TGATCA 4 cut(s) 162, 217, 349, 454
Fnu4HI GCNGC 8 cut(s) 24, 227, 302, 305, 308, 593, 617, 620
FokI GGATG 2 cut(s) 158, 620
FriOI GRGCYC 1 cut(s) 633
FseI GGCCGGCC 1 cut(s) 507
Fsp4HI GCNGC 8 cut(s) 24, 227, 302, 305, 308, 593, 617, 620
FspBI CTAG 1 cut(s) 80
GluI GCNGC 8 cut(s) 24, 227, 302, 305, 308, 593, 617, 620
HaeIII GGCC 4 cut(s) 107, 201, 503, 507
HapII CCGG 2 cut(s) 314, 504
Hin1II CATG 3 cut(s) 112, 284, 323
HinfI GANTC 4 cut(s) 120, 212, 284, 443
HpaII CCGG 2 cut(s) 314, 504
HphI GGTGA 2 cut(s) 157, 169
Hpy188I TCNGA 7 cut(s) 208, 217, 426, 448, 581, 588, 628
Hpy188III TCNNGA 6 cut(s) 91, 320, 362, 484, 521, 604
Hpy99I CGWCG 1 cut(s) 395
HpyAV CCTTC 2 cut(s) 106, 610
HpyCH4III ACNGT 1 cut(s) 643
HpyCH4IV ACGT 3 cut(s) 377, 390, 540
HpyCH4V TGCA 3 cut(s) 23, 301, 407
HpyF10VI GCNNNNNNNGC 5 cut(s) 63, 113, 307, 616, 628
HpyF3I CTNAG 1 cut(s) 140
HpySE526I ACGT 3 cut(s) 377, 390, 540
Hsp92II CATG 3 cut(s) 112, 284, 323
KroI GCCGGC 1 cut(s) 503
KroNI GCCGGC 1 cut(s) 505
Ksp22I TGATCA 4 cut(s) 162, 217, 349, 454
Kzo9I GATC 8 cut(s) 162, 183, 217, 349, 364, 421, 454, 464
LmnI GCTCC 1 cut(s) 628
Lsp1109I GCAGC 7 cut(s) 35, 238, 313, 316, 604, 628, 631
LweI GCATC 1 cut(s) 394
MaeI CTAG 1 cut(s) 80
MaeII ACGT 3 cut(s) 377, 390, 540
MalI GATC 8 cut(s) 164, 185, 219, 351, 366, 423, 456, 466
MboI GATC 8 cut(s) 162, 183, 217, 349, 364, 421, 454, 464
MboII GAAGA 8 cut(s) 19, 22, 245, 248, 251, 254, 536, 539
MflI RGATCY 3 cut(s) 183, 421, 464
MhlI GDGCHC 1 cut(s) 633
MlsI TGGCCA 1 cut(s) 201
MluCI AATT 2 cut(s) 512, 582
MluNI TGGCCA 1 cut(s) 201
MlyI GAGTC 2 cut(s) 206, 437
MmeI TCCRAC 3 cut(s) 360, 368, 606
MnlI CCTC 7 cut(s) 76, 178, 186, 376, 493, 555, 600
Mox20I TGGCCA 1 cut(s) 201
MroNI GCCGGC 1 cut(s) 503
MscI TGGCCA 1 cut(s) 201
MseI TTAA 1 cut(s) 269
Msp20I TGGCCA 1 cut(s) 201
MspA1I CMGCKG 1 cut(s) 229
MspI CCGG 2 cut(s) 314, 504
MspR9I CCNGG 2 cut(s) 103, 509
MvaI CCWGG 2 cut(s) 103, 509
MvnI CGCG 1 cut(s) 310
MwoI GCNNNNNNNGC 5 cut(s) 63, 113, 307, 616, 628
NaeI GCCGGC 1 cut(s) 505
NdeII GATC 8 cut(s) 162, 183, 217, 349, 364, 421, 454, 464
NgoMIV GCCGGC 1 cut(s) 503
NlaIII CATG 3 cut(s) 112, 284, 323
NlaIV GGNNCC 3 cut(s) 466, 566, 611
PagI TCATGA 1 cut(s) 319
PaqCI CACCTGC 1 cut(s) 306
PcsI WCGNNNNNNNCGW 1 cut(s) 447
PdiI GCCGGC 1 cut(s) 505
PfeI GAWTC 2 cut(s) 120, 284
PflFI GACNNNGTC 1 cut(s) 389
PinAI ACCGGT 1 cut(s) 313
PkrI GCNGC 8 cut(s) 25, 228, 303, 306, 309, 594, 618, 621
PleI GAGTC 2 cut(s) 206, 437
PmaCI CACGTG 1 cut(s) 541
PmlI CACGTG 1 cut(s) 541
PpsI GAGTC 2 cut(s) 206, 437
Ppu21I YACGTR 1 cut(s) 541
PshBI ATTAAT 1 cut(s) 269
Psp124BI GAGCTC 1 cut(s) 633
Psp6I CCWGG 2 cut(s) 101, 507
PspCI CACGTG 1 cut(s) 541
PspGI CCWGG 2 cut(s) 101, 507
PspN4I GGNNCC 3 cut(s) 466, 566, 611
PspPI GGNCC 2 cut(s) 105, 385
PstI CTGCAG 1 cut(s) 303
PstNI CAGNNNCTG 1 cut(s) 229
PsuI RGATCY 3 cut(s) 183, 421, 464
PsyI GACNNNGTC 1 cut(s) 389
PvuII CAGCTG 1 cut(s) 229
RigI GGCCGGCC 1 cut(s) 507
RsaI GTAC 2 cut(s) 340, 416
RsaNI GTAC 2 cut(s) 339, 415
SacI GAGCTC 1 cut(s) 633
SaqAI TTAA 1 cut(s) 269
SatI GCNGC 8 cut(s) 24, 227, 302, 305, 308, 593, 617, 620
Sau3AI GATC 8 cut(s) 162, 183, 217, 349, 364, 421, 454, 464
Sau96I GGNCC 2 cut(s) 105, 385
ScaI AGTACT 1 cut(s) 340
SchI GAGTC 2 cut(s) 206, 437
ScrFI CCNGG 2 cut(s) 103, 509
SduI GDGCHC 1 cut(s) 633
SfaNI GCATC 1 cut(s) 394
SfcI CTRYAG 1 cut(s) 299
SinI GGWCC 1 cut(s) 385
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 2 cut(s) 512, 582
SsiI CCGC 3 cut(s) 50, 308, 571
SspI AATATT 2 cut(s) 267, 331
SspMI CTAG 1 cut(s) 80
SstI GAGCTC 1 cut(s) 633
StyD4I CCNGG 2 cut(s) 101, 507
TaaI ACNGT 1 cut(s) 643
TaiI ACGT 3 cut(s) 380, 393, 543
TaqI TCGA 3 cut(s) 118, 441, 522
TasI AATT 2 cut(s) 512, 582
TatI WGTACW 1 cut(s) 338
TauI GCSGC 1 cut(s) 310
TfiI GAWTC 2 cut(s) 120, 284
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TscAI CASTG 1 cut(s) 646
TseI GCWGC 7 cut(s) 23, 226, 301, 304, 592, 616, 619
TspDTI ATGAA 4 cut(s) 125, 297, 308, 544
TspGWI ACGGA 1 cut(s) 457
TspRI CASTG 1 cut(s) 646
Tth111I GACNNNGTC 1 cut(s) 389
VpaK11BI GGWCC 1 cut(s) 385
VspI ATTAAT 1 cut(s) 269
XagI CCTNNNNNAGG 1 cut(s) 604
XapI RAATTY 2 cut(s) 512, 582
XcmI CCANNNNNNNNNTGG 1 cut(s) 194
XspI CTAG 1 cut(s) 80
ZrmI AGTACT 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.