Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0010255

Physical Location & Seq

Genomic Coordinates Reverse (-)

260412 .. 263464

Gene Structure 3053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGCGAGCAGGTATTGGGTGGTGTCTCTGCCGGCTCAAAACTCGGCGTCGTCTCTATGGAACCGTCTGCAGGAACAAATCTCCAAGCACTCCTTCGACACTCCCCTCTACAGATTCAATATTCCCAATCTCCGTGTTGGAACCCTGGATTCTCTTCTCTCCCTCAGCGACGATCTCTTAAAGTCCAACAACTTTGTAGAGGGTGTTTCTCATAAGATCAGGCGCCAGATTGAGGAGCTCGAGAGGGTTTCAGGGGTGGAGAGTAGCGCTCTGACTGTCGATGGAGTCCCTGTCGATTCATACCTCACCAGGTTCGTTTGGGATGAAGCCAAGTACCCTACAATGTCGCCTTTGAAGGAGATTGTAGACAGCATTCATGGTCAAGTTGCAAAGATTGAGGATGATCTCAAGGTTCGAGTAGCCGAGTATAATAATGTCCGCAGTCAATTGAACGCTATCAATCGAAAGCAGAGTGGCAGTTTAGCAGTCCGTGATCTTTCTGGTTTAGTGAAACCAGAGGACATCATTATTTCAGAACATCTAGTGACTCTCCTTGCAATTGTTCCCAAGTACTCTCAGAAGGACTGGCTATCAAGCTATGAGACCCTGACTAACTATGTGGTTCCAAGGTCATCCAAGAAGTTATTTGAAGATAATGAATATGCTCTTTACACTGTAACACTGTTTAATCGGGTCGCAGATAACTTTAGAACAAGTGCTCGTGAAAAGGGGTTCCAGATTCGTGATTTTGAATACAGTTCTGAAGCACAAGAAAGTCGAAAGCAGGAGTTAGAAAAATTGGTGCAAGACCAAGAAAATTTAAGAGGCTCCCTTTTGCAGTGGTGCTATACCAGTTATGGGGAGGTTTTCAGCTCCTGGATGCATTTTTGTGCCGTACGTGTCTTTACAGAGAGCATTTTGAGATATGGTTTACCACCAAATTTCTTGGCATGTGTATTAGCCCCTCCTACAAAAGCTGAGAAGAAAGTGCGTTCAATCCTTGAAGGGTTGTGTGACAGTGGCAACAGCACCTTCTGGAAAACCGATGATGAAGTCGGCGGAGGGGTGCCTGGTCTAGCAGGTGATGTGGATGCACATCCATATGTTTCGTTCACGATCAATCTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000221 GO:0000325 GO:0000902 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008553 GO:0009507 GO:0009536 GO:0009653 GO:0009826 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016043 GO:0016049 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0032502 GO:0032989 GO:0032991 GO:0033176 GO:0033178 GO:0033180 GO:0034220 GO:0036442 GO:0040007 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0055085 GO:0060560 GO:0071840 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

V-ATPase_C

Protein Analysis

377

Amino Acids

42.58

Weight (kDa)

5.55

Isoelectric Point (pI)

46.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-ATPase_C	PF03223	5 - 346	7.2e-130	V-ATPase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12840
fragaria_vesca	FvH4_6g54180 FvH4_6g54180 FvH4_6g54180
malus_domestica	MD09G1004500.v1.1 MD17G1008500.v1.1
prunus_persica	Prupe.3G312200_v2.0.a1 Prupe.3G312200_v2.0.a1
pyrus_communis	pycom111g00330 pycom17g00350
rosa_chinensis	RchiOBHm_Chr2g0176361
rosa_laevigata	RLG00000022406
rosa_multiflora	Rmu_sc0009140.1_g000001 Rmu_sc0027060.1_g000004 Rmu_sc0035399.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076540
rosa_rugosa	Rorug02G0593500
rosa_samantha	Rh2AG672000 Rh2BG683500 Rh2DG697000
rosa_wichuraiana	Rw2G055110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1070
Acc36I	ACCTGC	1 cut(s)	1070
AccB1I	GGYRCC	2 cut(s)	222, 1066
AccI	GTMKAC	1 cut(s)	366
AciI	CCGC	2 cut(s)	439, 1059
AcsI	RAATTY	2 cut(s)	817, 940
AcuI	CTGAAG	1 cut(s)	783
AcyI	GRCGYC	2 cut(s)	47, 223
AfaI	GTAC	3 cut(s)	335, 572, 897
AfeI	AGCGCT	1 cut(s)	268
AfiI	CCNNNNNNNGG	3 cut(s)	70, 232, 858
AflIII	ACRYGT	1 cut(s)	898
AgsI	TTSAA	7 cut(s)	118, 355, 451, 650, 752, 996, 1004
AjnI	CCWGG	4 cut(s)	144, 308, 875, 1069
AjuI	GAANNNNNNNTTGG	2 cut(s)	77, 109
AluBI	AGCT	4 cut(s)	238, 597, 873, 977
AluI	AGCT	4 cut(s)	238, 597, 873, 977
Alw21I	GWGCWC	2 cut(s)	240, 721
Alw26I	GTCTC	3 cut(s)	30, 57, 596
AlwNI	CAGNNNCTG	1 cut(s)	876
Ama87I	CYCGRG	1 cut(s)	239
Aor51HI	AGCGCT	1 cut(s)	268
ApoI	RAATTY	2 cut(s)	817, 940
AspLEI	GCGC	2 cut(s)	225, 269
AsuHPI	GGTGA	2 cut(s)	298, 1094
AvaI	CYCGRG	1 cut(s)	239
BanI	GGYRCC	2 cut(s)	222, 1066
BanII	GRGCYC	1 cut(s)	240
BauI	CACGAG	1 cut(s)	720
Bbv12I	GWGCWC	2 cut(s)	240, 721
BbvCI	CCTCAGC	1 cut(s)	164
BccI	CCATC	1 cut(s)	275
BceAI	ACGGC	1 cut(s)	878
BciT130I	CCWGG	4 cut(s)	146, 310, 877, 1071
BcoDI	GTCTC	3 cut(s)	30, 57, 596
BfaI	CTAG	2 cut(s)	542, 1076
BfmI	CTRYAG	2 cut(s)	68, 109
BfoI	RGCGCY	2 cut(s)	226, 270
BfuAI	ACCTGC	1 cut(s)	1070
BmcAI	AGTACT	1 cut(s)	572
Bme1390I	CCNGG	4 cut(s)	146, 310, 877, 1071
BmeT110I	CYCGRG	1 cut(s)	239
BmiI	GGNNCC	7 cut(s)	62, 142, 224, 624, 734, 829, 1068
BmrFI	CCNGG	4 cut(s)	146, 310, 877, 1071
BmsI	GCATC	2 cut(s)	870, 1081
BplI	GAGNNNNNCTC	2 cut(s)	253, 285
Bpu10I	CCTNAGC	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	392
BsaAI	YACGTR	1 cut(s)	899
BsaBI	GATNNNNATC	1 cut(s)	1095
BsaHI	GRCGYC	2 cut(s)	47, 223
BsaI	GGTCTC	1 cut(s)	596
BsaJI	CCNNGG	2 cut(s)	144, 626
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 232, 858
Bse118I	RCCGGY	1 cut(s)	31
Bse1I	ACTGG	2 cut(s)	590, 852
Bse8I	GATNNNNATC	1 cut(s)	1095
BseBI	CCWGG	4 cut(s)	146, 310, 877, 1071
BseDI	CCNNGG	2 cut(s)	144, 626
BseGI	GGATG	6 cut(s)	328, 406, 632, 885, 1096, 1096
BseJI	GATNNNNATC	1 cut(s)	1095
BseLI	CCNNNNNNNGG	3 cut(s)	70, 232, 858
BseMII	CTCAG	3 cut(s)	178, 590, 969
BseNI	ACTGG	2 cut(s)	590, 852
BseRI	GAGGAG	1 cut(s)	248
BshNI	GGYRCC	2 cut(s)	222, 1066
BsiHKAI	GWGCWC	2 cut(s)	240, 721
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	1 cut(s)	32
BsiWI	CGTACG	1 cut(s)	895
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	3 cut(s)	70, 232, 858
BsmAI	GTCTC	3 cut(s)	30, 57, 596
BsmBI	CGTCTC	1 cut(s)	57
BsmFI	GGGAC	1 cut(s)	272
BsmI	GAATGC	1 cut(s)	372
Bso31I	GGTCTC	1 cut(s)	596
BsoBI	CYCGRG	1 cut(s)	239
Bsp1286I	GDGCHC	2 cut(s)	240, 721
Bsp143I	GATC	5 cut(s)	172, 216, 403, 493, 1116
BspACI	CCGC	2 cut(s)	439, 1059
BspCNI	CTCAG	3 cut(s)	177, 589, 970
BspLI	GGNNCC	7 cut(s)	62, 142, 224, 624, 734, 829, 1068
BspMAI	CTGCAG	1 cut(s)	72
BspMI	ACCTGC	1 cut(s)	1070
BspT107I	GGYRCC	2 cut(s)	222, 1066
BspTNI	GGTCTC	1 cut(s)	596
BsrFI	RCCGGY	1 cut(s)	31
BsrI	ACTGG	2 cut(s)	590, 852
BssAI	RCCGGY	1 cut(s)	31
BssECI	CCNNGG	2 cut(s)	144, 626
BssMI	GATC	5 cut(s)	172, 216, 403, 493, 1116
BssNI	GRCGYC	2 cut(s)	47, 223
BssSI	CACGAG	1 cut(s)	720
BssT1I	CCWWGG	1 cut(s)	626
Bst2BI	CACGAG	1 cut(s)	720
Bst2UI	CCWGG	4 cut(s)	146, 310, 877, 1071
Bst4CI	ACNGT	6 cut(s)	65, 277, 676, 684, 758, 1019
Bst6I	CTCTTC	1 cut(s)	159
BstACI	GRCGYC	2 cut(s)	47, 223
BstBAI	YACGTR	1 cut(s)	899
BstC8I	GCNNGC	2 cut(s)	7, 33
BstDEI	CTNAG	3 cut(s)	164, 576, 978
BstF5I	GGATG	6 cut(s)	328, 406, 632, 885, 1096, 1096
BstH2I	RGCGCY	2 cut(s)	226, 270
BstHHI	GCGC	2 cut(s)	225, 269
BstKTI	GATC	5 cut(s)	175, 219, 406, 496, 1119
BstMAI	GTCTC	3 cut(s)	30, 57, 596
BstMBI	GATC	5 cut(s)	172, 216, 403, 493, 1116
BstNI	CCWGG	4 cut(s)	146, 310, 877, 1071
BstNSI	RCATGY	1 cut(s)	954
BstSCI	CCNGG	4 cut(s)	144, 308, 875, 1069
BstSFI	CTRYAG	2 cut(s)	68, 109
BtsCI	GGATG	6 cut(s)	328, 406, 632, 885, 1096, 1096
BtsI	GCAGTG	1 cut(s)	845
BtsIMutI	CAGTG	4 cut(s)	672, 680, 845, 1024
BveI	ACCTGC	1 cut(s)	1070
Cac8I	GCNNGC	2 cut(s)	7, 33
CaiI	CAGNNNCTG	1 cut(s)	876
CfoI	GCGC	2 cut(s)	225, 269
Cfr10I	RCCGGY	1 cut(s)	31
CseI	GACGC	1 cut(s)	36
CsiI	ACCWGGT	1 cut(s)	308
Csp6I	GTAC	3 cut(s)	334, 571, 896
CviAII	CATG	2 cut(s)	377, 951
CviQI	GTAC	3 cut(s)	334, 571, 896
DdeI	CTNAG	3 cut(s)	164, 576, 978
DinI	GGCGCC	1 cut(s)	224
DpnI	GATC	5 cut(s)	174, 218, 405, 495, 1118
DpnII	GATC	5 cut(s)	172, 216, 403, 493, 1116
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
EciI	GGCGGA	1 cut(s)	1074
Ecl136II	GAGCTC	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	626
Eco24I	GRGCYC	1 cut(s)	240
Eco31I	GGTCTC	1 cut(s)	596
Eco47III	AGCGCT	1 cut(s)	268
Eco53kI	GAGCTC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	783
Eco88I	CYCGRG	1 cut(s)	239
EcoICRI	GAGCTC	1 cut(s)	238
EcoRII	CCWGG	4 cut(s)	144, 308, 875, 1069
EcoT14I	CCWWGG	1 cut(s)	626
EcoT22I	ATGCAT	1 cut(s)	885
EcoT38I	GRGCYC	1 cut(s)	240
EgeI	GGCGCC	1 cut(s)	224
EheI	GGCGCC	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	626
Esp3I	CGTCTC	1 cut(s)	57
FaeI	CATG	2 cut(s)	380, 954
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	2 cut(s)	376, 950
FauNDI	CATATG	1 cut(s)	1102
FblI	GTMKAC	1 cut(s)	366
FokI	GGATG	6 cut(s)	335, 413, 619, 892, 1083, 1103
FriOI	GRGCYC	1 cut(s)	240
FspBI	CTAG	2 cut(s)	542, 1076
GlaI	GCGC	2 cut(s)	224, 268
HaeII	RGCGCY	2 cut(s)	226, 270
HapII	CCGG	1 cut(s)	32
HgaI	GACGC	1 cut(s)	36
HhaI	GCGC	2 cut(s)	225, 269
Hin1I	GRCGYC	2 cut(s)	47, 223
Hin1II	CATG	2 cut(s)	380, 954
Hin6I	GCGC	2 cut(s)	223, 267
HinP1I	GCGC	2 cut(s)	223, 267
HinfI	GANTC	6 cut(s)	114, 149, 285, 296, 547, 739
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	2 cut(s)	298, 1094
Hpy166II	GTNNAC	3 cut(s)	367, 932, 1113
Hpy188I	TCNGA	4 cut(s)	273, 535, 579, 763
Hpy188III	TCNNGA	6 cut(s)	241, 722, 736, 743, 1036, 1114
Hpy8I	GTNNAC	3 cut(s)	367, 932, 1113
Hpy99I	CGWCG	2 cut(s)	52, 173
HpyAV	CCTTC	5 cut(s)	103, 349, 574, 998, 1042
HpyCH4III	ACNGT	6 cut(s)	65, 277, 676, 684, 758, 1019
HpyCH4IV	ACGT	1 cut(s)	898
HpyCH4V	TGCA	7 cut(s)	70, 389, 557, 805, 838, 883, 1094
HpyF3I	CTNAG	3 cut(s)	164, 576, 978
HpySE526I	ACGT	1 cut(s)	898
Hsp92I	GRCGYC	2 cut(s)	47, 223
Hsp92II	CATG	2 cut(s)	380, 954
HspAI	GCGC	2 cut(s)	223, 267
KasI	GGCGCC	1 cut(s)	222
KroI	GCCGGC	1 cut(s)	31
KroNI	GCCGGC	1 cut(s)	33
Kzo9I	GATC	5 cut(s)	172, 216, 403, 493, 1116
LmnI	GCTCC	3 cut(s)	235, 833, 878
LweI	GCATC	2 cut(s)	870, 1081
MabI	ACCWGGT	1 cut(s)	308
MaeI	CTAG	2 cut(s)	542, 1076
MaeII	ACGT	1 cut(s)	898
MaeIII	GTNAC	3 cut(s)	544, 676, 1013
MalI	GATC	5 cut(s)	174, 218, 405, 495, 1118
MboI	GATC	5 cut(s)	172, 216, 403, 493, 1116
MboII	GAAGA	3 cut(s)	146, 662, 994
MfeI	CAATTG	2 cut(s)	446, 558
MhlI	GDGCHC	2 cut(s)	240, 721
MluCI	AATT	5 cut(s)	446, 558, 797, 817, 940
Mly113I	GGCGCC	1 cut(s)	223
MlyI	GAGTC	2 cut(s)	294, 541
MmeI	TCCRAC	2 cut(s)	118, 210
Mph1103I	ATGCAT	1 cut(s)	885
MroNI	GCCGGC	1 cut(s)	31
MseI	TTAA	3 cut(s)	179, 687, 821
MslI	CAYNNNNRTG	2 cut(s)	888, 1101
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	4 cut(s)	146, 310, 877, 1071
MunI	CAATTG	2 cut(s)	446, 558
Mva1269I	GAATGC	1 cut(s)	372
MvaI	CCWGG	4 cut(s)	146, 310, 877, 1071
NaeI	GCCGGC	1 cut(s)	33
NarI	GGCGCC	1 cut(s)	223
NdeI	CATATG	1 cut(s)	1102
NdeII	GATC	5 cut(s)	172, 216, 403, 493, 1116
NgoMIV	GCCGGC	1 cut(s)	31
NlaIII	CATG	2 cut(s)	380, 954
NlaIV	GGNNCC	7 cut(s)	62, 142, 224, 624, 734, 829, 1068
NmeAIII	GCCGAG	2 cut(s)	23, 448
NmuCI	GTSAC	2 cut(s)	544, 1013
NsiI	ATGCAT	1 cut(s)	885
NspI	RCATGY	1 cut(s)	954
PaeR7I	CTCGAG	1 cut(s)	239
PaqCI	CACCTGC	1 cut(s)	1070
PctI	GAATGC	1 cut(s)	372
PdiI	GCCGGC	1 cut(s)	33
PfeI	GAWTC	4 cut(s)	114, 149, 296, 739
Pfl23II	CGTACG	1 cut(s)	895
PfoI	TCCNGGA	1 cut(s)	875
PleI	GAGTC	2 cut(s)	293, 541
PluTI	GGCGCC	1 cut(s)	226
PpsI	GAGTC	2 cut(s)	293, 541
Ppu21I	YACGTR	1 cut(s)	899
Psp124BI	GAGCTC	1 cut(s)	240
Psp6I	CCWGG	4 cut(s)	144, 308, 875, 1069
PspGI	CCWGG	4 cut(s)	144, 308, 875, 1069
PspLI	CGTACG	1 cut(s)	895
PspN4I	GGNNCC	7 cut(s)	62, 142, 224, 624, 734, 829, 1068
PstI	CTGCAG	1 cut(s)	72
PstNI	CAGNNNCTG	1 cut(s)	876
RsaI	GTAC	3 cut(s)	335, 572, 897
RsaNI	GTAC	3 cut(s)	334, 571, 896
RseI	CAYNNNNRTG	2 cut(s)	888, 1101
SacI	GAGCTC	1 cut(s)	240
SaqAI	TTAA	3 cut(s)	179, 687, 821
Sau3AI	GATC	5 cut(s)	172, 216, 403, 493, 1116
ScaI	AGTACT	1 cut(s)	572
SchI	GAGTC	2 cut(s)	294, 541
ScrFI	CCNGG	4 cut(s)	146, 310, 877, 1071
SduI	GDGCHC	2 cut(s)	240, 721
SexAI	ACCWGGT	1 cut(s)	308
SfaNI	GCATC	2 cut(s)	870, 1081
SfcI	CTRYAG	2 cut(s)	68, 109
SfoI	GGCGCC	1 cut(s)	224
Sfr274I	CTCGAG	1 cut(s)	239
SlaI	CTCGAG	1 cut(s)	239
SmiMI	CAYNNNNRTG	2 cut(s)	888, 1101
SmlI	CTYRAG	2 cut(s)	239, 407
SmoI	CTYRAG	2 cut(s)	239, 407
Sse9I	AATT	5 cut(s)	446, 558, 797, 817, 940
SsiI	CCGC	2 cut(s)	439, 1059
SspDI	GGCGCC	1 cut(s)	222
SspI	AATATT	1 cut(s)	121
SspMI	CTAG	2 cut(s)	542, 1076
SstI	GAGCTC	1 cut(s)	240
StyD4I	CCNGG	4 cut(s)	144, 308, 875, 1069
StyI	CCWWGG	1 cut(s)	626
TaaI	ACNGT	6 cut(s)	65, 277, 676, 684, 758, 1019
TaiI	ACGT	1 cut(s)	901
TaqI	TCGA	7 cut(s)	96, 240, 279, 294, 415, 463, 778
TasI	AATT	5 cut(s)	446, 558, 797, 817, 940
TatI	WGTACW	1 cut(s)	570
TfiI	GAWTC	4 cut(s)	114, 149, 296, 739
Tru1I	TTAA	3 cut(s)	179, 687, 821
Tru9I	TTAA	3 cut(s)	179, 687, 821
TscAI	CASTG	4 cut(s)	679, 687, 845, 1024
TseFI	GTSAC	2 cut(s)	544, 1013
Tsp45I	GTSAC	2 cut(s)	544, 1013
TspDTI	ATGAA	5 cut(s)	288, 339, 365, 672, 1065
TspGWI	ACGGA	2 cut(s)	122, 479
TspRI	CASTG	4 cut(s)	679, 687, 845, 1024
XapI	RAATTY	2 cut(s)	817, 940
XceI	RCATGY	1 cut(s)	954
XhoI	CTCGAG	1 cut(s)	239
XmiI	GTMKAC	1 cut(s)	366
XspI	CTAG	2 cut(s)	542, 1076
ZrmI	AGTACT	1 cut(s)	572
Zsp2I	ATGCAT	1 cut(s)	885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.