pycom17g00540

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0008943
Physical Location & Seq
Reverse (-)
385787 .. 389202
3416 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1341 bp
ATGTACGTGGTGCCTCCACCGCAGCGATCGGATCCGGCTTCCGGATCCGCCGGCGCCGCCGCTGATTTGCGGGTCTACCAGAATTGGAAGGGCAGCAATATATTTTTCCTTCAGGGGAGGATTGTTTTTGGACCAGATGTAAGATCGTTGGGGCTGACCATATTTCTGATTGTTGCTCCTGTTACAATATTCTGCATCTTTGTTGCCAGAAAGTTGATGGACCATTACTCACATCACTTGGGAATATTCATAATGGCTGTTGCTGTTGTATTCACTGTTTATGATTTAATTCTCCTCCTGCTAACCTCTGGAAGAGATCCTGGTATAATTCCCCGTAACACACACCCTCCAGAGCCTGAAGGATTTGATGGGAATATAGAAGGTGGGGCGGGACAAACTCCACAGTTGCGCTTGCCTCGCATCAAAGAAGTTGAGGTGAATGGAATCTCTGTTAAGATCAAGTATTGCGATACTTGTATGCTTTATAGACCTCCTCGCTGCTCCCACTGTTCAATATGCAACAACTGTGTACAAAGGATCGATCACCATTGTCCCTGGGTTGGGCAGTGTATTGGGCTGAGGAACTATCGATTCTTCTTCATGTTTGTCTTCTCCACAACTCTTCTTTGTATATATGTTTTTGCATTCTGCTGGGTGTACGTTAGAAGGATCATGGAAGCTGAGGAGACAACGATTTGGAAAGCAATGATTAAAACTCCAGCATCTATTGTGCTGATAGTCTATACTTTCATATCGATGTGGTTTGTTGGTGGTCTTACTGCCTTCCATTTGTATCTCATCAGTACAAATCAGACTACATATGAGAATTTCCGCTATCGATATGATAGGCGAGCCAACCCGTATAACAAAGGAGTGGTCGACAATTTCAAAGAGATATTTTGTACCACCATTCCCAAGTCCAAGAACAATTTCAGGGACAAGGTTCCAAGGGAACCGGTGTTACCTCCTCGATCAGGGGGTGGGGGTTTTATGAGCCCAAATATGGGAAAAGCTGTGGATGACATTGAAATGGGCAGAAAAACAGTGTGGGGTGACATGAATGCTGGGGGAGATAATTACGACGGGCAGCATAACGGCAATGATCGCGTGAATGTAAAAGATGGTGAATTAAGTGAAGTATCCCCAGATATAAGGACGACAGTAGATGAAACTGTGGATCGCGCTGGAATACATCCCAGGCGATCATCGAGCTGGGGAAGGAAAAGTGGAAGTTGGGAAATGTCCCCAGAAGTTCTTGCTTTAGCAGCTAGAGTCGGGGAACCAAACCGCATGGGCGGCAGTAGCAGCGGTGGCTTGACGAACGAGAACCGACATACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04391 map04391
Pfam Domains
Protein Families
DHHC

Protein Analysis

447

Amino Acids

50.08

Weight (kDa)

8.84

Isoelectric Point (pI)

36.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 152 - 278 6.5e-40 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 10, 53
AccI GTMKAC 2 cut(s) 75, 879
AccII CGCG 2 cut(s) 1107, 1182
AccIII TCCGGA 1 cut(s) 41
AclWI GGATC 8 cut(s) 26, 39, 39, 52, 311, 545, 677, 1185
AcsI RAATTY 1 cut(s) 826
AcuI CTGAAG 2 cut(s) 95, 378
AcyI GRCGYC 1 cut(s) 54
AfaI GTAC 5 cut(s) 5, 531, 659, 805, 904
AfiI CCNNNNNNNGG 6 cut(s) 41, 560, 561, 974, 1003, 1004
AgeI ACCGGT 1 cut(s) 955
AgsI TTSAA 3 cut(s) 513, 889, 1028
AjnI CCWGG 3 cut(s) 319, 554, 1196
AjuI GAANNNNNNNTTGG 2 cut(s) 914, 946
AluBI AGCT 4 cut(s) 680, 1013, 1212, 1268
AluI AGCT 4 cut(s) 680, 1013, 1212, 1268
Alw26I GTCTC 1 cut(s) 680
AlwI GGATC 8 cut(s) 26, 39, 39, 52, 311, 545, 677, 1185
AlwNI CAGNNNCTG 1 cut(s) 356
Aor13HI TCCGGA 1 cut(s) 41
ApeKI GCWGC 6 cut(s) 22, 93, 498, 1087, 1265, 1305
ApoI RAATTY 1 cut(s) 826
ArsI GACNNNNNNTTYG 2 cut(s) 861, 893
AsiGI ACCGGT 1 cut(s) 955
Asp700I GAANNNNTTC 1 cut(s) 929
AspLEI GCGC 3 cut(s) 56, 411, 1184
AspS9I GGNCC 2 cut(s) 131, 220
AsuHPI GGTGA 4 cut(s) 448, 536, 1064, 1136
AvaII GGWCC 2 cut(s) 131, 220
BamHI GGATCC 2 cut(s) 31, 44
BanI GGYRCC 2 cut(s) 10, 53
BanII GRGCYC 1 cut(s) 998
BbsI GAAGAC 1 cut(s) 601
BbvCI CCTCAGC 2 cut(s) 578, 681
BbvI GCAGC 6 cut(s) 34, 105, 485, 1099, 1277, 1317
BccI CCATC 3 cut(s) 211, 362, 1115
BceAI ACGGC 1 cut(s) 1111
BciT130I CCWGG 3 cut(s) 321, 556, 1198
BciVI GTATCC 1 cut(s) 1150
BcoDI GTCTC 1 cut(s) 680
BfaI CTAG 1 cut(s) 1269
BfoI RGCGCY 1 cut(s) 57
BfuI GTATCC 1 cut(s) 1150
BisI GCNGC 9 cut(s) 23, 57, 60, 94, 499, 1088, 1266, 1297, 1306
BlsI GCNGC 9 cut(s) 24, 58, 61, 95, 500, 1089, 1267, 1298, 1307
Bme1390I CCNGG 3 cut(s) 321, 556, 1198
Bme18I GGWCC 2 cut(s) 131, 220
BmgT120I GGNCC 2 cut(s) 131, 220
BmiI GGNNCC 7 cut(s) 12, 33, 46, 55, 945, 954, 1281
BmrFI CCNGG 3 cut(s) 321, 556, 1198
BmsI GCATC 3 cut(s) 204, 429, 731
BpiI GAAGAC 1 cut(s) 601
BpmI CTGGAG 2 cut(s) 333, 702
Bpu10I CCTNAGC 2 cut(s) 578, 681
Bsa29I ATCGAT 4 cut(s) 540, 589, 755, 838
BsaAI YACGTR 1 cut(s) 7
BsaHI GRCGYC 1 cut(s) 54
BsaJI CCNNGG 4 cut(s) 554, 555, 947, 1196
BsaWI WCCGGW 2 cut(s) 41, 955
BsaXI ACNNNNNCTCC 2 cut(s) 331, 361
Bsc4I CCNNNNNNNGG 6 cut(s) 41, 560, 561, 974, 1003, 1004
Bse118I RCCGGY 2 cut(s) 50, 955
Bse3DI GCAATG 2 cut(s) 711, 1105
BseAI TCCGGA 1 cut(s) 41
BseBI CCWGG 3 cut(s) 321, 556, 1198
BseCI ATCGAT 4 cut(s) 540, 589, 755, 838
BseDI CCNNGG 4 cut(s) 554, 555, 947, 1196
BseGI GGATG 2 cut(s) 1024, 1192
BseLI CCNNNNNNNGG 6 cut(s) 41, 560, 561, 974, 1003, 1004
BseMI GCAATG 2 cut(s) 711, 1105
BseMII CTCAG 2 cut(s) 569, 672
BseRI GAGGAG 4 cut(s) 284, 483, 698, 957
BseXI GCAGC 6 cut(s) 34, 105, 485, 1099, 1277, 1317
BseYI CCCAGC 3 cut(s) 651, 1064, 1212
Bsh1236I CGCG 2 cut(s) 1107, 1182
Bsh1285I CGRYCG 1 cut(s) 29
BshNI GGYRCC 2 cut(s) 10, 53
BshTI ACCGGT 1 cut(s) 955
BshVI ATCGAT 4 cut(s) 540, 589, 755, 838
BsiEI CGRYCG 1 cut(s) 29
BsiSI CCGG 4 cut(s) 35, 42, 51, 956
BslFI GGGAC 4 cut(s) 405, 537, 950, 1228
BslI CCNNNNNNNGG 6 cut(s) 41, 560, 561, 974, 1003, 1004
BsmAI GTCTC 1 cut(s) 680
BsmFI GGGAC 4 cut(s) 405, 537, 950, 1228
BsmI GAATGC 2 cut(s) 644, 1066
Bsp1286I GDGCHC 1 cut(s) 998
Bsp13I TCCGGA 1 cut(s) 41
Bsp1407I TGTACA 1 cut(s) 529
BspCNI CTCAG 2 cut(s) 570, 673
BspDI ATCGAT 4 cut(s) 540, 589, 755, 838
BspEI TCCGGA 1 cut(s) 41
BspFNI CGCG 2 cut(s) 1107, 1182
BspLI GGNNCC 7 cut(s) 12, 33, 46, 55, 945, 954, 1281
BspPI GGATC 8 cut(s) 26, 39, 39, 52, 311, 545, 677, 1185
BspT107I GGYRCC 2 cut(s) 10, 53
BsrDI GCAATG 2 cut(s) 711, 1105
BsrFI RCCGGY 2 cut(s) 50, 955
BsrGI TGTACA 1 cut(s) 529
BssAI RCCGGY 2 cut(s) 50, 955
BssECI CCNNGG 4 cut(s) 554, 555, 947, 1196
BssNI GRCGYC 1 cut(s) 54
BssT1I CCWWGG 1 cut(s) 947
Bst2UI CCWGG 3 cut(s) 321, 556, 1198
Bst4CI ACNGT 7 cut(s) 277, 405, 509, 527, 1045, 1162, 1174
Bst6I CTCTTC 2 cut(s) 307, 627
BstACI GRCGYC 1 cut(s) 54
BstAUI TGTACA 1 cut(s) 529
BstBAI YACGTR 1 cut(s) 7
BstC8I GCNNGC 3 cut(s) 52, 413, 852
BstDEI CTNAG 2 cut(s) 578, 681
BstENI CCTNNNNNAGG 1 cut(s) 972
BstF5I GGATG 2 cut(s) 1024, 1192
BstFNI CGCG 2 cut(s) 1107, 1182
BstH2I RGCGCY 1 cut(s) 57
BstHHI GCGC 3 cut(s) 56, 411, 1184
BstMAI GTCTC 1 cut(s) 680
BstMCI CGRYCG 1 cut(s) 29
BstMWI GCNNNNNNNGC 9 cut(s) 19, 56, 417, 1104, 1265, 1296, 1302, 1305, 1311
BstNI CCWGG 3 cut(s) 321, 556, 1198
BstSCI CCNGG 3 cut(s) 319, 554, 1196
BstUI CGCG 2 cut(s) 1107, 1182
BstV1I GCAGC 6 cut(s) 34, 105, 485, 1099, 1277, 1317
BstV2I GAAGAC 1 cut(s) 601
BstX2I RGATCY 3 cut(s) 31, 44, 316
BstYI RGATCY 3 cut(s) 31, 44, 316
Bsu15I ATCGAT 4 cut(s) 540, 589, 755, 838
BsuI GTATCC 1 cut(s) 1150
BsuTUI ATCGAT 4 cut(s) 540, 589, 755, 838
BtsCI GGATG 2 cut(s) 1024, 1192
BtsI GCAGTG 1 cut(s) 572
BtsIMutI CAGTG 4 cut(s) 273, 505, 572, 1050
Cac8I GCNNGC 3 cut(s) 52, 413, 852
CaiI CAGNNNCTG 1 cut(s) 356
CfoI GCGC 3 cut(s) 56, 411, 1184
Cfr10I RCCGGY 2 cut(s) 50, 955
Cfr13I GGNCC 2 cut(s) 131, 220
ClaI ATCGAT 4 cut(s) 540, 589, 755, 838
Csp6I GTAC 5 cut(s) 4, 530, 658, 804, 903
CspAI ACCGGT 1 cut(s) 955
CviAII CATG 4 cut(s) 601, 673, 1057, 1291
CviQI GTAC 5 cut(s) 4, 530, 658, 804, 903
DdeI CTNAG 2 cut(s) 578, 681
DinI GGCGCC 1 cut(s) 55
Eam1104I CTCTTC 2 cut(s) 307, 627
EarI CTCTTC 2 cut(s) 307, 627
EciI GGCGGA 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 947
Eco24I GRGCYC 1 cut(s) 998
Eco47I GGWCC 2 cut(s) 131, 220
Eco57I CTGAAG 2 cut(s) 95, 378
EcoNI CCTNNNNNAGG 1 cut(s) 972
EcoRII CCWGG 3 cut(s) 319, 554, 1196
EcoT14I CCWWGG 1 cut(s) 947
EcoT38I GRGCYC 1 cut(s) 998
EgeI GGCGCC 1 cut(s) 55
EheI GGCGCC 1 cut(s) 55
ErhI CCWWGG 1 cut(s) 947
FaeI CATG 4 cut(s) 604, 676, 1060, 1294
FaqI GGGAC 4 cut(s) 405, 537, 950, 1228
FatI CATG 4 cut(s) 600, 672, 1056, 1290
FauI CCCGC 2 cut(s) 63, 382
FauNDI CATATG 1 cut(s) 820
FblI GTMKAC 2 cut(s) 75, 879
Fnu4HI GCNGC 9 cut(s) 23, 57, 60, 94, 499, 1088, 1266, 1297, 1306
FokI GGATG 2 cut(s) 1031, 1179
FriOI GRGCYC 1 cut(s) 998
Fsp4HI GCNGC 9 cut(s) 23, 57, 60, 94, 499, 1088, 1266, 1297, 1306
FspBI CTAG 1 cut(s) 1269
GlaI GCGC 3 cut(s) 55, 410, 1183
GluI GCNGC 9 cut(s) 23, 57, 60, 94, 499, 1088, 1266, 1297, 1306
GsaI CCCAGC 3 cut(s) 655, 1068, 1216
GsuI CTGGAG 2 cut(s) 333, 702
HaeII RGCGCY 1 cut(s) 57
HapII CCGG 4 cut(s) 35, 42, 51, 956
HhaI GCGC 3 cut(s) 56, 411, 1184
Hin1I GRCGYC 1 cut(s) 54
Hin1II CATG 4 cut(s) 604, 676, 1060, 1294
Hin6I GCGC 3 cut(s) 54, 409, 1182
HinP1I GCGC 3 cut(s) 54, 409, 1182
HincII GTYRAC 1 cut(s) 880
HindII GTYRAC 1 cut(s) 880
HinfI GANTC 3 cut(s) 444, 591, 1272
HpaII CCGG 4 cut(s) 35, 42, 51, 956
HphI GGTGA 4 cut(s) 448, 536, 1064, 1136
Hpy166II GTNNAC 4 cut(s) 76, 530, 658, 880
Hpy188I TCNGA 3 cut(s) 31, 168, 813
Hpy188III TCNNGA 3 cut(s) 42, 309, 350
Hpy8I GTNNAC 4 cut(s) 76, 530, 658, 880
Hpy99I CGWCG 1 cut(s) 1085
HpyAV CCTTC 7 cut(s) 82, 119, 353, 374, 660, 793, 1212
HpyCH4III ACNGT 7 cut(s) 277, 405, 509, 527, 1045, 1162, 1174
HpyCH4IV ACGT 2 cut(s) 6, 660
HpyCH4V TGCA 3 cut(s) 195, 519, 644
HpyF10VI GCNNNNNNNGC 9 cut(s) 19, 56, 417, 1104, 1265, 1296, 1302, 1305, 1311
HpyF3I CTNAG 2 cut(s) 578, 681
HpySE526I ACGT 2 cut(s) 6, 660
Hsp92I GRCGYC 1 cut(s) 54
Hsp92II CATG 4 cut(s) 604, 676, 1060, 1294
HspAI GCGC 3 cut(s) 54, 409, 1182
KasI GGCGCC 1 cut(s) 53
Kpn2I TCCGGA 1 cut(s) 41
KroI GCCGGC 1 cut(s) 50
KroNI GCCGGC 1 cut(s) 52
LmnI GCTCC 2 cut(s) 181, 506
Lsp1109I GCAGC 6 cut(s) 34, 105, 485, 1099, 1277, 1317
LweI GCATC 3 cut(s) 204, 429, 731
MaeI CTAG 1 cut(s) 1269
MaeII ACGT 2 cut(s) 6, 660
MaeIII GTNAC 4 cut(s) 181, 335, 960, 1052
MboII GAAGA 5 cut(s) 324, 586, 589, 601, 614
MflI RGATCY 3 cut(s) 31, 44, 316
MhlI GDGCHC 1 cut(s) 998
MluCI AATT 8 cut(s) 82, 288, 327, 826, 883, 928, 1075, 1127
Mly113I GGCGCC 1 cut(s) 54
MlyI GAGTC 1 cut(s) 1281
MreI CGCCGGCG 1 cut(s) 50
MroI TCCGGA 1 cut(s) 41
MroNI GCCGGC 1 cut(s) 50
MroXI GAANNNNTTC 1 cut(s) 929
MseI TTAA 4 cut(s) 287, 453, 711, 1130
MslI CAYNNNNRTG 2 cut(s) 755, 1028
MspA1I CMGCKG 2 cut(s) 62, 1308
MspI CCGG 4 cut(s) 35, 42, 51, 956
MspR9I CCNGG 3 cut(s) 321, 556, 1198
Mva1269I GAATGC 2 cut(s) 644, 1066
MvaI CCWGG 3 cut(s) 321, 556, 1198
MvnI CGCG 2 cut(s) 1107, 1182
MwoI GCNNNNNNNGC 9 cut(s) 19, 56, 417, 1104, 1265, 1296, 1302, 1305, 1311
NaeI GCCGGC 1 cut(s) 52
NarI GGCGCC 1 cut(s) 54
NdeI CATATG 1 cut(s) 820
NgoMIV GCCGGC 1 cut(s) 50
NlaIII CATG 4 cut(s) 604, 676, 1060, 1294
NlaIV GGNNCC 7 cut(s) 12, 33, 46, 55, 945, 954, 1281
NmuCI GTSAC 1 cut(s) 1052
PasI CCCWGGG 1 cut(s) 555
PctI GAATGC 2 cut(s) 644, 1066
PdiI GCCGGC 1 cut(s) 52
PdmI GAANNNNTTC 1 cut(s) 929
PfeI GAWTC 2 cut(s) 444, 591
PinAI ACCGGT 1 cut(s) 955
PkrI GCNGC 9 cut(s) 24, 58, 61, 95, 500, 1089, 1267, 1298, 1307
Ple19I CGATCG 1 cut(s) 29
PleI GAGTC 1 cut(s) 1280
PluTI GGCGCC 1 cut(s) 57
PpsI GAGTC 1 cut(s) 1280
Ppu21I YACGTR 1 cut(s) 7
Psp6I CCWGG 3 cut(s) 319, 554, 1196
PspFI CCCAGC 3 cut(s) 651, 1064, 1212
PspGI CCWGG 3 cut(s) 319, 554, 1196
PspN4I GGNNCC 7 cut(s) 12, 33, 46, 55, 945, 954, 1281
PspPI GGNCC 2 cut(s) 131, 220
PsrI GAACNNNNNNTAC 2 cut(s) 945, 977
PstNI CAGNNNCTG 1 cut(s) 356
PsuI RGATCY 3 cut(s) 31, 44, 316
PvuI CGATCG 1 cut(s) 29
RsaI GTAC 5 cut(s) 5, 531, 659, 805, 904
RsaNI GTAC 5 cut(s) 4, 530, 658, 804, 903
RseI CAYNNNNRTG 2 cut(s) 755, 1028
SalI GTCGAC 1 cut(s) 878
SaqAI TTAA 4 cut(s) 287, 453, 711, 1130
SatI GCNGC 9 cut(s) 23, 57, 60, 94, 499, 1088, 1266, 1297, 1306
Sau96I GGNCC 2 cut(s) 131, 220
SchI GAGTC 1 cut(s) 1281
ScrFI CCNGG 3 cut(s) 321, 556, 1198
SduI GDGCHC 1 cut(s) 998
SfaNI GCATC 3 cut(s) 204, 429, 731
SfoI GGCGCC 1 cut(s) 55
SgrAI CRCCGGYG 1 cut(s) 50
SinI GGWCC 2 cut(s) 131, 220
SmiMI CAYNNNNRTG 2 cut(s) 755, 1028
Sse9I AATT 8 cut(s) 82, 288, 327, 826, 883, 928, 1075, 1127
SspDI GGCGCC 1 cut(s) 53
SspI AATATT 2 cut(s) 189, 246
SspMI CTAG 1 cut(s) 1269
StyD4I CCNGG 3 cut(s) 319, 554, 1196
StyI CCWWGG 1 cut(s) 947
TaaI ACNGT 7 cut(s) 277, 405, 509, 527, 1045, 1162, 1174
TaiI ACGT 2 cut(s) 9, 663
TaqI TCGA 7 cut(s) 540, 589, 755, 838, 879, 970, 1208
TasI AATT 8 cut(s) 82, 288, 327, 826, 883, 928, 1075, 1127
TatI WGTACW 2 cut(s) 529, 803
TauI GCSGC 3 cut(s) 59, 62, 1299
TfiI GAWTC 2 cut(s) 444, 591
Tru1I TTAA 4 cut(s) 287, 453, 711, 1130
Tru9I TTAA 4 cut(s) 287, 453, 711, 1130
TscAI CASTG 4 cut(s) 280, 512, 572, 1050
TseFI GTSAC 1 cut(s) 1052
TseI GCWGC 6 cut(s) 22, 93, 498, 1087, 1265, 1305
Tsp45I GTSAC 1 cut(s) 1052
TspDTI ATGAA 5 cut(s) 238, 589, 739, 1073, 1182
TspRI CASTG 4 cut(s) 280, 512, 572, 1050
VpaK11BI GGWCC 2 cut(s) 131, 220
XagI CCTNNNNNAGG 1 cut(s) 972
XapI RAATTY 1 cut(s) 826
XcmI CCANNNNNNNNNTGG 1 cut(s) 214
XmiI GTMKAC 2 cut(s) 75, 879
XmnI GAANNNNTTC 1 cut(s) 929
XspI CTAG 1 cut(s) 1269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.