Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005792

Physical Location & Seq

Genomic Coordinates Reverse (-)

713351 .. 714001

Gene Structure 651 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGTTTGCTTCTGCAACATGTGGTTCCTACGGATATGTGGCCGGTGGGATGGGATTAGCAAGTGATTGGAAAGCCATGGATTCTGCTGAGAGATTCGATCCCAGGACGAAATCATGGGAGCCCCTTCCGAATATGAAGCGAGAAAGGATGAGTTGCTCCGGCTGTTTCTTGGACAACAAGTTTTATGTGATTGGAGGGAAAGATTGGCATGGAAGAGATATTTTCTGTGCTGAAGCCTTTGATGTTGAGAAACACACATGGGAACTCATCCCGGACATGCTAGAAGCTGACTGGACAGCTCTAAGCAACCCATCTCCGCCTCTTATTGCAGTGGTGGCCAACCAGCTGTACTCTCTTGAAACTTCCACAAATGAGCTCAAGGTGTATCTGAAGCAAAGAAAGGCATGGAAGAAGTTGGGAGTTGTTCCGGTGAGAGCTGATGCTACTTCTGGATGGGGCGTGGCATTTAAGGCGCTCGGGGACAAGCTACTTGTCATCCAATCTTCATCAGATGCAAATGCAGGAGGCCCTGCCCTCATATACACTTGCTGCCCCGATCCATCTGCTGAAGAATTGCAGTGGCAAGCTCTTGAGCACGGCCACAGCCGCCCTACCCGCTTCATTGTTAATTGTTCCGTCATGGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_1 Kelch_6

Protein Analysis

217

Amino Acids

23.79

Weight (kDa)

5.82

Isoelectric Point (pI)

31.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_1	PF01344	2 - 46	1.2e-07	Kelch motif
Kelch_FKB95	PF25210	6 - 92	9.6e-14	FKB95, Kelch-repeats domain
Kelch_1	PF01344	49 - 93	1.6e-10	Kelch motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27150 AT3G27150 AT5G40680
fragaria_vesca	FvH4_6g53292 FvH4_6g53292 FvH4_6g53292 FvH4_6g53292 FvH4_6g53292
malus_domestica	MD09G1011800.v1.1 MD09G1011900.v1.1 MD17G1012500.v1.1
prunus_persica	Prupe.3G305200_v2.0.a1 Prupe.3G305200_v2.0.a1
pyrus_communis	pycom111g01010 pycom111g01020 pycom17g01000
rosa_chinensis	RchiOBHm_Chr2g0175451
rosa_laevigata	RLG00000022328
rosa_multiflora	Rmu_sc0003512.1_g000016
rosa_roxburghii	Rroxscaffold_2G00077320
rosa_rugosa	Rorug02G0584300 Rorug02G0584400 Rorug02G0584500
rosa_samantha	Rh2AG664300 Rh2BG675000 Rh2CG638300 Rh2DG689000
rosa_wichuraiana	Rw2G054440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	317, 607, 616
AclWI	GGATC	2 cut(s)	92, 551
AcoI	YGGCCR	3 cut(s)	39, 336, 598
AcuI	CTGAAG	3 cut(s)	252, 410, 588
AfaI	GTAC	1 cut(s)	350
AflIII	ACRYGT	1 cut(s)	17
AgsI	TTSAA	1 cut(s)	359
AjnI	CCWGG	1 cut(s)	101
AluBI	AGCT	7 cut(s)	287, 299, 346, 376, 437, 487, 587
AluI	AGCT	7 cut(s)	287, 299, 346, 376, 437, 487, 587
Alw21I	GWGCWC	2 cut(s)	378, 597
AlwI	GGATC	2 cut(s)	92, 551
Ama87I	CYCGRG	1 cut(s)	476
AoxI	GGCC	4 cut(s)	39, 336, 526, 598
ApeKI	GCWGC	2 cut(s)	549, 644
AspLEI	GCGC	1 cut(s)	475
AspS9I	GGNCC	1 cut(s)	527
AsuC2I	CCSGG	1 cut(s)	272
AsuHPI	GGTGA	1 cut(s)	442
AvaI	CYCGRG	1 cut(s)	476
BalI	TGGCCA	1 cut(s)	338
BanII	GRGCYC	2 cut(s)	123, 378
Bbv12I	GWGCWC	2 cut(s)	378, 597
BbvI	GCAGC	2 cut(s)	536, 631
BccI	CCATC	4 cut(s)	43, 319, 447, 568
BceAI	ACGGC	1 cut(s)	613
BcgI	CGANNNNNNTGC	2 cut(s)	545, 579
BciT130I	CCWGG	1 cut(s)	103
BcnI	CCSGG	1 cut(s)	272
BfaI	CTAG	1 cut(s)	281
BfoI	RGCGCY	1 cut(s)	476
BisI	GCNGC	3 cut(s)	550, 607, 645
BlsI	GCNGC	3 cut(s)	551, 608, 646
Bme1390I	CCNGG	2 cut(s)	103, 272
BmeT110I	CYCGRG	1 cut(s)	476
BmgT120I	GGNCC	1 cut(s)	527
BmiI	GGNNCC	2 cut(s)	25, 120
BmrFI	CCNGG	2 cut(s)	103, 272
BmsI	GCATC	2 cut(s)	430, 502
BpuEI	CTTGAG	2 cut(s)	362, 611
BpuMI	CCSGG	1 cut(s)	272
BsaJI	CCNNGG	2 cut(s)	75, 101
BsaWI	WCCGGW	1 cut(s)	427
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	296
BseBI	CCWGG	1 cut(s)	103
BseDI	CCNNGG	2 cut(s)	75, 101
BseGI	GGATG	5 cut(s)	54, 153, 267, 458, 495
BseMII	CTCAG	1 cut(s)	78
BseNI	ACTGG	1 cut(s)	296
BseXI	GCAGC	2 cut(s)	536, 631
BshFI	GGCC	4 cut(s)	41, 338, 528, 600
BsiHKAI	GWGCWC	2 cut(s)	378, 597
BsiHKCI	CYCGRG	1 cut(s)	476
BsiSI	CCGG	4 cut(s)	42, 159, 272, 428
BslFI	GGGAC	1 cut(s)	494
BsmFI	GGGAC	1 cut(s)	494
BsnI	GGCC	4 cut(s)	41, 338, 528, 600
BsoBI	CYCGRG	1 cut(s)	476
Bsp1286I	GDGCHC	3 cut(s)	123, 378, 597
Bsp143I	GATC	2 cut(s)	97, 556
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	3 cut(s)	317, 607, 616
BspANI	GGCC	4 cut(s)	41, 338, 528, 600
BspCNI	CTCAG	1 cut(s)	79
BspLI	GGNNCC	2 cut(s)	25, 120
BspPI	GGATC	2 cut(s)	92, 551
BsrFI	RCCGGY	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	296
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	2 cut(s)	75, 101
BssMI	GATC	2 cut(s)	97, 556
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	1 cut(s)	103
Bst6I	CTCTTC	1 cut(s)	208
BstC8I	GCNNGC	1 cut(s)	585
BstDEI	CTNAG	2 cut(s)	87, 302
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	5 cut(s)	54, 153, 267, 458, 495
BstH2I	RGCGCY	1 cut(s)	476
BstHHI	GCGC	1 cut(s)	475
BstKTI	GATC	2 cut(s)	100, 559
BstMBI	GATC	2 cut(s)	97, 556
BstMWI	GCNNNNNNNGC	4 cut(s)	335, 470, 606, 615
BstNI	CCWGG	1 cut(s)	103
BstNSI	RCATGY	2 cut(s)	21, 280
BstSCI	CCNGG	2 cut(s)	101, 270
BstV1I	GCAGC	2 cut(s)	536, 631
BsuRI	GGCC	4 cut(s)	41, 338, 528, 600
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	5 cut(s)	54, 153, 267, 458, 495
BtsI	GCAGTG	2 cut(s)	336, 584
BtsIMutI	CAGTG	2 cut(s)	336, 584
Cac8I	GCNNGC	1 cut(s)	585
CfoI	GCGC	1 cut(s)	475
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	527
Csp6I	GTAC	1 cut(s)	349
CviAII	CATG	8 cut(s)	18, 76, 114, 209, 258, 277, 405, 640
CviQI	GTAC	1 cut(s)	349
DdeI	CTNAG	2 cut(s)	87, 302
DpnI	GATC	2 cut(s)	99, 558
DpnII	GATC	2 cut(s)	97, 556
EaeI	YGGCCR	3 cut(s)	39, 336, 598
Eam1104I	CTCTTC	1 cut(s)	208
EarI	CTCTTC	1 cut(s)	208
EciI	GGCGGA	1 cut(s)	306
Ecl136II	GAGCTC	1 cut(s)	376
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	2 cut(s)	123, 378
Eco53kI	GAGCTC	1 cut(s)	376
Eco57I	CTGAAG	3 cut(s)	252, 410, 588
Eco88I	CYCGRG	1 cut(s)	476
EcoICRI	GAGCTC	1 cut(s)	376
EcoO109I	RGGNCCY	1 cut(s)	527
EcoRII	CCWGG	1 cut(s)	101
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	2 cut(s)	123, 378
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	8 cut(s)	21, 79, 117, 212, 261, 280, 408, 643
FaqI	GGGAC	1 cut(s)	494
FatI	CATG	8 cut(s)	17, 75, 113, 208, 257, 276, 404, 639
FauI	CCCGC	1 cut(s)	623
Fnu4HI	GCNGC	3 cut(s)	550, 607, 645
FokI	GGATG	5 cut(s)	61, 160, 254, 465, 482
FriOI	GRGCYC	2 cut(s)	123, 378
Fsp4HI	GCNGC	3 cut(s)	550, 607, 645
FspBI	CTAG	1 cut(s)	281
GlaI	GCGC	1 cut(s)	474
GluI	GCNGC	3 cut(s)	550, 607, 645
HaeII	RGCGCY	1 cut(s)	476
HaeIII	GGCC	4 cut(s)	41, 338, 528, 600
HapII	CCGG	4 cut(s)	42, 159, 272, 428
HhaI	GCGC	1 cut(s)	475
Hin1II	CATG	8 cut(s)	21, 79, 117, 212, 261, 280, 408, 643
Hin6I	GCGC	1 cut(s)	473
HinP1I	GCGC	1 cut(s)	473
HinfI	GANTC	2 cut(s)	80, 93
HpaII	CCGG	4 cut(s)	42, 159, 272, 428
HphI	GGTGA	1 cut(s)	442
Hpy188I	TCNGA	3 cut(s)	129, 390, 511
Hpy188III	TCNNGA	3 cut(s)	356, 450, 590
HpyAV	CCTTC	1 cut(s)	134
HpyCH4V	TGCA	5 cut(s)	14, 329, 515, 521, 577
HpyF10VI	GCNNNNNNNGC	4 cut(s)	335, 470, 606, 615
HpyF3I	CTNAG	2 cut(s)	87, 302
Hsp92II	CATG	8 cut(s)	21, 79, 117, 212, 261, 280, 408, 643
HspAI	GCGC	1 cut(s)	473
Kzo9I	GATC	2 cut(s)	97, 556
LmnI	GCTCC	2 cut(s)	118, 161
Lsp1109I	GCAGC	2 cut(s)	536, 631
LweI	GCATC	2 cut(s)	430, 502
MaeI	CTAG	1 cut(s)	281
MalI	GATC	2 cut(s)	99, 558
MboI	GATC	2 cut(s)	97, 556
MboII	GAAGA	4 cut(s)	225, 421, 495, 581
MhlI	GDGCHC	3 cut(s)	123, 378, 597
MlsI	TGGCCA	1 cut(s)	338
MluCI	AATT	2 cut(s)	572, 628
MluNI	TGGCCA	1 cut(s)	338
MnlI	CCTC	4 cut(s)	188, 330, 518, 545
Mox20I	TGGCCA	1 cut(s)	338
MscI	TGGCCA	1 cut(s)	338
MseI	TTAA	2 cut(s)	468, 627
Msp20I	TGGCCA	1 cut(s)	338
MspA1I	CMGCKG	1 cut(s)	346
MspI	CCGG	4 cut(s)	42, 159, 272, 428
MspR9I	CCNGG	2 cut(s)	103, 272
MvaI	CCWGG	1 cut(s)	103
MwoI	GCNNNNNNNGC	4 cut(s)	335, 470, 606, 615
NciI	CCSGG	1 cut(s)	272
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	2 cut(s)	97, 556
NlaIII	CATG	8 cut(s)	21, 79, 117, 212, 261, 280, 408, 643
NlaIV	GGNNCC	2 cut(s)	25, 120
NspI	RCATGY	2 cut(s)	21, 280
PciI	ACATGT	1 cut(s)	17
PfeI	GAWTC	2 cut(s)	80, 93
PfoI	TCCNGGA	1 cut(s)	270
PkrI	GCNGC	3 cut(s)	551, 608, 646
PscI	ACATGT	1 cut(s)	17
Psp124BI	GAGCTC	1 cut(s)	378
Psp6I	CCWGG	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	101
PspN4I	GGNNCC	2 cut(s)	25, 120
PspPI	GGNCC	1 cut(s)	527
PvuII	CAGCTG	1 cut(s)	346
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
SacI	GAGCTC	1 cut(s)	378
SaqAI	TTAA	2 cut(s)	468, 627
SatI	GCNGC	3 cut(s)	550, 607, 645
Sau3AI	GATC	2 cut(s)	97, 556
Sau96I	GGNCC	1 cut(s)	527
ScrFI	CCNGG	2 cut(s)	103, 272
SduI	GDGCHC	3 cut(s)	123, 378, 597
SetI	ASST	8 cut(s)	289, 301, 348, 378, 384, 439, 489, 589
SfaNI	GCATC	2 cut(s)	430, 502
SmlI	CTYRAG	2 cut(s)	377, 590
SmoI	CTYRAG	2 cut(s)	377, 590
Sse9I	AATT	2 cut(s)	572, 628
SsiI	CCGC	3 cut(s)	317, 607, 616
SspMI	CTAG	1 cut(s)	281
SstI	GAGCTC	1 cut(s)	378
StyD4I	CCNGG	2 cut(s)	101, 270
StyI	CCWWGG	1 cut(s)	75
TaqI	TCGA	1 cut(s)	96
TasI	AATT	2 cut(s)	572, 628
TatI	WGTACW	1 cut(s)	348
TauI	GCSGC	1 cut(s)	609
TfiI	GAWTC	2 cut(s)	80, 93
Tru1I	TTAA	2 cut(s)	468, 627
Tru9I	TTAA	2 cut(s)	468, 627
TscAI	CASTG	2 cut(s)	336, 584
TseI	GCWGC	2 cut(s)	549, 644
TspDTI	ATGAA	3 cut(s)	149, 495, 610
TspGWI	ACGGA	2 cut(s)	45, 625
TspRI	CASTG	2 cut(s)	336, 584
XceI	RCATGY	2 cut(s)	21, 280
XspI	CTAG	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.