Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0006697

Physical Location & Seq

Genomic Coordinates Forward (+)

776297 .. 778336

Gene Structure 2040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGTTGGAAGGGGATTGGATTGCAAATGGGGCCCGTCTAACGACCGGTCGCGCTCCCACCAACCCCAGCAGCTATTTTTCTTTACGGATTTGTGGCGTCTTCTCTCCCACCAAAAACTGAAAAGTAAGTTTAGTAGACCGGCGGCTTCTGAAAAAATGGGTGTGGCGGCGAAAATAGCACCGTCGATGCTGTCGTCGGACTTCGCTAATTTGGCATCAGAGGCCGAGCGCATGCTCAAATGCGGCGCCGATTGGCTCCACATGGACATCATGGATGGGCACTTTGTCCCGAATTTAACACTCGGTGCTCCGGTCATTCAGAGTTTGAGAAAGCACACAAAGGCGTATCTTGATTGTCACCTAATGGTCACAAATCCTCTTGATTATGTCGAACCTATGGGAAAAGCCGGTGCTTCAGGTTTTACATTTCATGTTGAAGTATCTAAAGACAATTGGCAAGAACTTGTTCAAAGAGTTAAGTCCAAGGGCATGACGCCAGGTGTGGCATTAAAGCCAGGAACGCCAATTGAAGAAGTCTATCCTCTGATTGAAGGTGAAAATCATGTGGAAATGGTCCTTGTTATGACCGTAGAACCTGGGTTTGGTGGACAAAAGTTCATGCCGGAAATGATGGAGAAGGTGCGCACACTGAGACAAAGGTACCCTTCGCTAGATATAGAGGTAGATGGTGGCTTAGGGCCTTCAACGATTGATGTGGCAGCTTCAGCCGGAGCCAACTGCATAGTTGCAGGAAGTTCTGTGTTCGGAGCCCCTGAGCCTGCTACAGTAATATCCCTTTTGAGAAGTAGCGTTGAGGGAGTTCAACAAAAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004750 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009052 GO:0009056 GO:0009117 GO:0009987 GO:0016052 GO:0016853 GO:0016854 GO:0016857 GO:0019321 GO:0019323 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0043167 GO:0043169 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046365 GO:0046483 GO:0046496 GO:0046872 GO:0051156 GO:0051186 GO:0055086 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00030 ko00040 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00040 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Ribul_P_3_epim

Protein Analysis

279

Amino Acids

30.37

Weight (kDa)

6.71

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribul_P_3_epim	PF00834	58 - 255	2.8e-69	Ribulose-phosphate 3 epimerase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63290 AT3G01850 AT3G01850 AT3G01850 AT3G01850
fragaria_vesca	FvH4_6g53180 FvH4_6g53180 FvH4_6g53180 FvH4_6g53180
malus_domestica	MD09G1013300.v1.1 MD17G1014000.v1.1
prunus_persica	Prupe.3G303800_v2.0.a1
pyrus_communis	pycom111g01130 pycom17g01110
rosa_chinensis	RchiOBHm_Chr2g0175221
rosa_laevigata	RLG00000022312
rosa_multiflora	Rmu_sc0003920.1_g000021 Rmu_sc0010642.1_g000016
rosa_roxburghii	Rroxscaffold_2G00077480
rosa_rugosa	Rorug02G0581600 Rorug02G0581700
rosa_samantha	Rh2AG662200 Rh2BG673400 Rh2CG636600 Rh2DG687300
rosa_wichuraiana	Rw2G054310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	644
Acc65I	GGTACC	1 cut(s)	660
AccB1I	GGYRCC	2 cut(s)	245, 660
AccI	GTMKAC	1 cut(s)	136
AccII	CGCG	1 cut(s)	52
AciI	CCGC	3 cut(s)	143, 167, 243
AcsI	RAATTY	1 cut(s)	292
AcuI	CTGAAG	2 cut(s)	399, 708
AcyI	GRCGYC	3 cut(s)	97, 246, 494
AdeI	CACNNNGTG	1 cut(s)	305
AfaI	GTAC	1 cut(s)	662
AfiI	CCNNNNNNNGG	1 cut(s)	602
AgeI	ACCGGT	1 cut(s)	45
AgsI	TTSAA	6 cut(s)	437, 470, 530, 551, 705, 824
AjnI	CCWGG	3 cut(s)	496, 514, 595
AjuI	GAANNNNNNNTTGG	2 cut(s)	585, 617
AluBI	AGCT	2 cut(s)	73, 722
AluI	AGCT	2 cut(s)	73, 722
Alw21I	GWGCWC	1 cut(s)	310
Alw26I	GTCTC	1 cut(s)	646
AoxI	GGCC	3 cut(s)	31, 222, 698
ApaI	GGGCCC	1 cut(s)	35
ApeKI	GCWGC	2 cut(s)	70, 719
ApoI	RAATTY	1 cut(s)	292
AsiGI	ACCGGT	1 cut(s)	45
Asp700I	GAANNNNTTC	1 cut(s)	465
Asp718I	GGTACC	1 cut(s)	660
AspLEI	GCGC	4 cut(s)	54, 231, 248, 645
AspS9I	GGNCC	4 cut(s)	31, 32, 574, 698
AsuHPI	GGTGA	2 cut(s)	350, 566
AvaII	GGWCC	1 cut(s)	574
BaeGI	GKGCMC	2 cut(s)	35, 282
BaeI	ACNNNNGTAYC	2 cut(s)	644, 677
BanI	GGYRCC	2 cut(s)	245, 660
BanII	GRGCYC	2 cut(s)	35, 772
BbsI	GAAGAC	1 cut(s)	92
Bbv12I	GWGCWC	1 cut(s)	310
BbvI	GCAGC	2 cut(s)	82, 731
BccI	CCATC	3 cut(s)	269, 625, 680
BciT130I	CCWGG	3 cut(s)	498, 516, 597
BcoDI	GTCTC	1 cut(s)	646
BfaI	CTAG	1 cut(s)	671
BfmI	CTRYAG	1 cut(s)	783
BfoI	RGCGCY	1 cut(s)	249
BisI	GCNGC	5 cut(s)	71, 144, 168, 244, 720
BlsI	GCNGC	5 cut(s)	72, 145, 169, 245, 721
Bme1390I	CCNGG	3 cut(s)	498, 516, 597
Bme18I	GGWCC	1 cut(s)	574
BmgT120I	GGNCC	4 cut(s)	31, 32, 574, 698
BmiI	GGNNCC	7 cut(s)	32, 33, 247, 257, 662, 733, 769
BmrFI	CCNGG	3 cut(s)	498, 516, 597
BmsI	GCATC	2 cut(s)	177, 224
BpiI	GAAGAC	1 cut(s)	92
Bpu10I	CCTNAGC	2 cut(s)	694, 774
BsaHI	GRCGYC	3 cut(s)	97, 246, 494
BsaJI	CCNNGG	2 cut(s)	483, 596
BsaWI	WCCGGW	2 cut(s)	45, 310
Bsc4I	CCNNNNNNNGG	1 cut(s)	602
Bse118I	RCCGGY	3 cut(s)	45, 139, 407
BseBI	CCWGG	3 cut(s)	498, 516, 597
BseDI	CCNNGG	2 cut(s)	483, 596
BseGI	GGATG	1 cut(s)	280
BseLI	CCNNNNNNNGG	1 cut(s)	602
BseMII	CTCAG	2 cut(s)	641, 765
BseSI	GKGCMC	2 cut(s)	35, 282
BseXI	GCAGC	2 cut(s)	82, 731
BseYI	CCCAGC	1 cut(s)	66
Bsh1236I	CGCG	1 cut(s)	52
Bsh1285I	CGRYCG	2 cut(s)	46, 50
BshFI	GGCC	3 cut(s)	33, 224, 700
BshNI	GGYRCC	2 cut(s)	245, 660
BshTI	ACCGGT	1 cut(s)	45
BsiEI	CGRYCG	2 cut(s)	46, 50
BsiHKAI	GWGCWC	1 cut(s)	310
BsiSI	CCGG	6 cut(s)	46, 140, 311, 408, 623, 729
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	1 cut(s)	602
BsmAI	GTCTC	1 cut(s)	646
BsmFI	GGGAC	1 cut(s)	272
BsnI	GGCC	3 cut(s)	33, 224, 700
Bsp120I	GGGCCC	1 cut(s)	31
Bsp1286I	GDGCHC	4 cut(s)	35, 282, 310, 772
BspACI	CCGC	3 cut(s)	143, 167, 243
BspANI	GGCC	3 cut(s)	33, 224, 700
BspCNI	CTCAG	2 cut(s)	642, 766
BspFNI	CGCG	1 cut(s)	52
BspLI	GGNNCC	7 cut(s)	32, 33, 247, 257, 662, 733, 769
BspT107I	GGYRCC	2 cut(s)	245, 660
BsrFI	RCCGGY	3 cut(s)	45, 139, 407
BssAI	RCCGGY	3 cut(s)	45, 139, 407
BssECI	CCNNGG	2 cut(s)	483, 596
BssNI	GRCGYC	3 cut(s)	97, 246, 494
BssT1I	CCWWGG	1 cut(s)	483
Bst2UI	CCWGG	3 cut(s)	498, 516, 597
Bst4CI	ACNGT	3 cut(s)	183, 589, 787
BstACI	GRCGYC	3 cut(s)	97, 246, 494
BstC8I	GCNNGC	2 cut(s)	233, 780
BstDEI	CTNAG	3 cut(s)	650, 694, 774
BstF5I	GGATG	1 cut(s)	280
BstFNI	CGCG	1 cut(s)	52
BstH2I	RGCGCY	1 cut(s)	249
BstHHI	GCGC	4 cut(s)	54, 231, 248, 645
BstMAI	GTCTC	1 cut(s)	646
BstMCI	CGRYCG	2 cut(s)	46, 50
BstMWI	GCNNNNNNNGC	6 cut(s)	30, 176, 212, 221, 520, 725
BstNI	CCWGG	3 cut(s)	498, 516, 597
BstNSI	RCATGY	1 cut(s)	235
BstSCI	CCNGG	3 cut(s)	496, 514, 595
BstSFI	CTRYAG	1 cut(s)	783
BstSLI	GKGCMC	2 cut(s)	35, 282
BstUI	CGCG	1 cut(s)	52
BstV1I	GCAGC	2 cut(s)	82, 731
BstV2I	GAAGAC	1 cut(s)	92
BsuRI	GGCC	3 cut(s)	33, 224, 700
BtsCI	GGATG	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	647
Cac8I	GCNNGC	2 cut(s)	233, 780
CfoI	GCGC	4 cut(s)	54, 231, 248, 645
Cfr10I	RCCGGY	3 cut(s)	45, 139, 407
Cfr13I	GGNCC	4 cut(s)	31, 32, 574, 698
CseI	GACGC	2 cut(s)	86, 502
Csp6I	GTAC	1 cut(s)	661
CspAI	ACCGGT	1 cut(s)	45
CviAII	CATG	7 cut(s)	232, 262, 271, 431, 490, 563, 619
CviQI	GTAC	1 cut(s)	661
DdeI	CTNAG	3 cut(s)	650, 694, 774
DinI	GGCGCC	1 cut(s)	247
DraIII	CACNNNGTG	1 cut(s)	305
Eco130I	CCWWGG	1 cut(s)	483
Eco24I	GRGCYC	2 cut(s)	35, 772
Eco47I	GGWCC	1 cut(s)	574
Eco57I	CTGAAG	2 cut(s)	399, 708
EcoO109I	RGGNCCY	2 cut(s)	31, 698
EcoRII	CCWGG	3 cut(s)	496, 514, 595
EcoT14I	CCWWGG	1 cut(s)	483
EcoT38I	GRGCYC	2 cut(s)	35, 772
EgeI	GGCGCC	1 cut(s)	247
EheI	GGCGCC	1 cut(s)	247
ErhI	CCWWGG	1 cut(s)	483
FaeI	CATG	7 cut(s)	235, 265, 274, 434, 493, 566, 622
FalI	AAGNNNNNCTT	2 cut(s)	649, 681
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	7 cut(s)	231, 261, 270, 430, 489, 562, 618
FblI	GTMKAC	1 cut(s)	136
Fnu4HI	GCNGC	5 cut(s)	71, 144, 168, 244, 720
FokI	GGATG	1 cut(s)	287
FriOI	GRGCYC	2 cut(s)	35, 772
Fsp4HI	GCNGC	5 cut(s)	71, 144, 168, 244, 720
FspAI	RTGCGCAY	1 cut(s)	644
FspBI	CTAG	1 cut(s)	671
FspI	TGCGCA	1 cut(s)	644
GlaI	GCGC	4 cut(s)	53, 230, 247, 644
GluI	GCNGC	5 cut(s)	71, 144, 168, 244, 720
GsaI	CCCAGC	1 cut(s)	70
HaeII	RGCGCY	1 cut(s)	249
HaeIII	GGCC	3 cut(s)	33, 224, 700
HapII	CCGG	6 cut(s)	46, 140, 311, 408, 623, 729
HgaI	GACGC	2 cut(s)	86, 502
HhaI	GCGC	4 cut(s)	54, 231, 248, 645
Hin1I	GRCGYC	3 cut(s)	97, 246, 494
Hin1II	CATG	7 cut(s)	235, 265, 274, 434, 493, 566, 622
Hin6I	GCGC	4 cut(s)	52, 229, 246, 643
HinP1I	GCGC	4 cut(s)	52, 229, 246, 643
HpaII	CCGG	6 cut(s)	46, 140, 311, 408, 623, 729
HphI	GGTGA	2 cut(s)	350, 566
Hpy166II	GTNNAC	2 cut(s)	137, 608
Hpy188I	TCNGA	6 cut(s)	151, 199, 220, 321, 546, 767
Hpy188III	TCNNGA	3 cut(s)	289, 350, 380
Hpy8I	GTNNAC	2 cut(s)	137, 608
Hpy99I	CGWCG	2 cut(s)	187, 199
HpyAV	CCTTC	5 cut(s)	3, 545, 631, 675, 711
HpyCH4III	ACNGT	3 cut(s)	183, 589, 787
HpyCH4V	TGCA	3 cut(s)	24, 741, 749
HpyF10VI	GCNNNNNNNGC	6 cut(s)	30, 176, 212, 221, 520, 725
HpyF3I	CTNAG	3 cut(s)	650, 694, 774
Hsp92I	GRCGYC	3 cut(s)	97, 246, 494
Hsp92II	CATG	7 cut(s)	235, 265, 274, 434, 493, 566, 622
HspAI	GCGC	4 cut(s)	52, 229, 246, 643
KasI	GGCGCC	1 cut(s)	245
KpnI	GGTACC	1 cut(s)	664
LmnI	GCTCC	5 cut(s)	59, 261, 313, 731, 767
Lsp1109I	GCAGC	2 cut(s)	82, 731
LweI	GCATC	2 cut(s)	177, 224
MaeI	CTAG	1 cut(s)	671
MaeIII	GTNAC	2 cut(s)	356, 367
MboII	GAAGA	2 cut(s)	92, 542
MfeI	CAATTG	2 cut(s)	451, 525
MhlI	GDGCHC	4 cut(s)	35, 282, 310, 772
MluCI	AATT	4 cut(s)	208, 292, 451, 525
Mly113I	GGCGCC	1 cut(s)	246
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	5 cut(s)	214, 387, 552, 673, 808
MroXI	GAANNNNTTC	1 cut(s)	465
MseI	TTAA	3 cut(s)	296, 477, 509
MspI	CCGG	6 cut(s)	46, 140, 311, 408, 623, 729
MspR9I	CCNGG	3 cut(s)	498, 516, 597
MunI	CAATTG	2 cut(s)	451, 525
MvaI	CCWGG	3 cut(s)	498, 516, 597
MvnI	CGCG	1 cut(s)	52
MwoI	GCNNNNNNNGC	6 cut(s)	30, 176, 212, 221, 520, 725
NarI	GGCGCC	1 cut(s)	246
NlaIII	CATG	7 cut(s)	235, 265, 274, 434, 493, 566, 622
NlaIV	GGNNCC	7 cut(s)	32, 33, 247, 257, 662, 733, 769
NmeAIII	GCCGAG	1 cut(s)	250
NmuCI	GTSAC	2 cut(s)	356, 367
NsbI	TGCGCA	1 cut(s)	644
NspI	RCATGY	1 cut(s)	235
PaeI	GCATGC	1 cut(s)	235
PcsI	WCGNNNNNNNCGW	1 cut(s)	191
PdmI	GAANNNNTTC	1 cut(s)	465
PinAI	ACCGGT	1 cut(s)	45
PkrI	GCNGC	5 cut(s)	72, 145, 169, 245, 721
PluTI	GGCGCC	1 cut(s)	249
Psp6I	CCWGG	3 cut(s)	496, 514, 595
PspFI	CCCAGC	1 cut(s)	66
PspGI	CCWGG	3 cut(s)	496, 514, 595
PspN4I	GGNNCC	7 cut(s)	32, 33, 247, 257, 662, 733, 769
PspOMI	GGGCCC	1 cut(s)	31
PspPI	GGNCC	4 cut(s)	31, 32, 574, 698
RsaI	GTAC	1 cut(s)	662
RsaNI	GTAC	1 cut(s)	661
SaqAI	TTAA	3 cut(s)	296, 477, 509
SatI	GCNGC	5 cut(s)	71, 144, 168, 244, 720
Sau96I	GGNCC	4 cut(s)	31, 32, 574, 698
ScrFI	CCNGG	3 cut(s)	498, 516, 597
SduI	GDGCHC	4 cut(s)	35, 282, 310, 772
SfaNI	GCATC	2 cut(s)	177, 224
SfcI	CTRYAG	1 cut(s)	783
SfoI	GGCGCC	1 cut(s)	247
SinI	GGWCC	1 cut(s)	574
SphI	GCATGC	1 cut(s)	235
Sse9I	AATT	4 cut(s)	208, 292, 451, 525
SsiI	CCGC	3 cut(s)	143, 167, 243
SspDI	GGCGCC	1 cut(s)	245
SspMI	CTAG	1 cut(s)	671
StyD4I	CCNGG	3 cut(s)	496, 514, 595
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	3 cut(s)	183, 589, 787
TaqI	TCGA	2 cut(s)	185, 390
TasI	AATT	4 cut(s)	208, 292, 451, 525
TauI	GCSGC	3 cut(s)	146, 170, 246
Tru1I	TTAA	3 cut(s)	296, 477, 509
Tru9I	TTAA	3 cut(s)	296, 477, 509
TscAI	CASTG	1 cut(s)	654
TseFI	GTSAC	2 cut(s)	356, 367
TseI	GCWGC	2 cut(s)	70, 719
Tsp45I	GTSAC	2 cut(s)	356, 367
TspDTI	ATGAA	2 cut(s)	419, 607
TspGWI	ACGGA	1 cut(s)	101
TspRI	CASTG	1 cut(s)	654
VpaK11BI	GGWCC	1 cut(s)	574
XapI	RAATTY	1 cut(s)	292
XceI	RCATGY	1 cut(s)	235
XmiI	GTMKAC	1 cut(s)	136
XmnI	GAANNNNTTC	1 cut(s)	465
XspI	CTAG	1 cut(s)	671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.