Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0011229

Physical Location & Seq

Genomic Coordinates Forward (+)

862479 .. 865071

Gene Structure 2593 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGCAAATCTCAATAACCATTTTGACTAAAAGGCCCTCACAACTCAATTTCGTGACCATTTGTCATAAAACTCCACTTTCTACAACCGAGTTTTACTCATCGAACCGTCCCCGCTCAACTCAGCTAAATGCGCGAATCGATCCCCGTGTTTCATTGATCGTGTTTCGAATCGAATCGTCCACCAAAAACACACACACACAAACCCAGAGCGAGCTCCCGAAGCTTTCTATCTCGTCTCCGCTCCCGGGTTCTCAGAAATCGGAAACTCGACCGGAAACCATGGAACCCGTGCAAGCTCTGGTGGCGAACATCCAAGGGCTTTCGAGCTCAGGCGACATCCCGCACCTTCACGCCCTTCTGAAGCAAGCGCAGGAGTCGCTCTACGCCGAGTCGACTCGGTTGCTTCCCGTTCTCGACCAGCTCGACCCTGCCAAGCACTCTCTCGGATACCTCTACATCCTGGAGGCATGCTCATCTGGTTCGATTTCAAAGGAGCAGGCGAGTGCGTTGGTCTTGCCCATTGCCAGATTTATCAATTCCTGTGCTGCAGAGCAGATTCGTTTGCAGCCTGATAAATTCATATCTGTTTGCAAGAGGTTCAAGGATCAAGTTATGCTGCTTGAAGCACCATTGCGAGGCGTGGCACCAATGCTGACAGCCATTCGGAAAATTCAGGCCTCCTCAGAACACTTGACTTCTTTGCATCCAGAGTTTCTTCTTCTTTGTTTGTTGTCAAAATCCTATAAAGCTGGATATTCTATTTTAGATGATGACATATTTGAGGTTGATCAGCCAAGGGATCTTTTTCTCTATTGCTATTACGGGGGGATGATATGCATAGGACAAAAGCGTTTTCGCAAAGCGTTGGAGCTTCTTCACAATGTTGTAACATCTCCAATGACTGTTGTTAATGCAATAGCTGTCGAAGCGTACAAAAAGCATATATTAGTTTCACTCATTCACAATTGGAATTTCTCTACCAGTCTTCCTAAATACACCTCTTCAGTAGCACAGAGGAATCTAAAGAACTTTTCTCAGGCTACCCTACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010389 GO:0010564 GO:0010971 GO:0019538 GO:0019941 GO:0030163 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051603 GO:0051726 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0090068 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902749 GO:1902751

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

351

Amino Acids

39.12

Weight (kDa)

9.15

Isoelectric Point (pI)

48.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COP9_hel_rpt	PF22788	111 - 336	2.2e-65	COP9 signalosome complex subunit 3, N-terminal helical repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14250 AT5G14250
fragaria_vesca	FvH4_6g52990 FvH4_6g52990
malus_domestica	MD09G1015400.v1.1 MD17G1015500.v1.1
prunus_persica	Prupe.3G302400_v2.0.a1
pyrus_communis	pycom111g01250 pycom16g21030 pycom17g01270
rosa_chinensis	RchiOBHm_Chr2g0174731
rosa_laevigata	RLG00000022291
rosa_multiflora	Rmu_ssc0000313.1_g000004
rosa_roxburghii	Rroxscaffold_2G00077780
rosa_rugosa	Rorug02G0579100
rosa_samantha	Rh2AG660400 Rh2BG671200 Rh2CG634500 Rh2DG684800
rosa_wichuraiana	Rw2G054100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	643
AccBSI	CCGCTC	2 cut(s)	114, 241
AccI	GTMKAC	1 cut(s)	392
AccII	CGCG	1 cut(s)	133
AciI	CCGC	3 cut(s)	112, 239, 341
AclWI	GGATC	3 cut(s)	134, 612, 807
AcsI	RAATTY	3 cut(s)	575, 669, 970
AcuI	CTGAAG	2 cut(s)	380, 987
AfaI	GTAC	1 cut(s)	932
AfiI	CCNNNNNNNGG	2 cut(s)	245, 635
AgsI	TTSAA	3 cut(s)	489, 601, 623
AhdI	GACNNNNNGTC	1 cut(s)	60
AjnI	CCWGG	1 cut(s)	459
AluBI	AGCT	9 cut(s)	124, 214, 223, 296, 327, 421, 749, 871, 920
AluI	AGCT	9 cut(s)	124, 214, 223, 296, 327, 421, 749, 871, 920
Alw21I	GWGCWC	2 cut(s)	216, 329
Alw26I	GTCTC	1 cut(s)	240
AlwI	GGATC	3 cut(s)	134, 612, 807
Ama87I	CYCGRG	1 cut(s)	244
AoxI	GGCC	2 cut(s)	32, 675
ApeKI	GCWGC	3 cut(s)	545, 565, 616
ApoI	RAATTY	3 cut(s)	575, 669, 970
AspLEI	GCGC	2 cut(s)	133, 370
AspS9I	GGNCC	1 cut(s)	33
AsuC2I	CCSGG	2 cut(s)	245, 246
AsuII	TTCGAA	1 cut(s)	166
AvaI	CYCGRG	1 cut(s)	244
BanI	GGYRCC	1 cut(s)	643
BanII	GRGCYC	2 cut(s)	216, 329
BbsI	GAAGAC	1 cut(s)	977
Bbv12I	GWGCWC	2 cut(s)	216, 329
BbvI	GCAGC	3 cut(s)	532, 577, 603
BcgI	CGANNNNNNTGC	2 cut(s)	382, 416
BciT130I	CCWGG	1 cut(s)	461
BciVI	GTATCC	1 cut(s)	440
BclI	TGATCA	1 cut(s)	787
BcnI	CCSGG	2 cut(s)	245, 246
BcoDI	GTCTC	1 cut(s)	240
BfmI	CTRYAG	1 cut(s)	546
BfuI	GTATCC	1 cut(s)	440
BisI	GCNGC	3 cut(s)	546, 566, 617
BlsI	GCNGC	3 cut(s)	547, 567, 618
Bme1390I	CCNGG	3 cut(s)	245, 246, 461
BmeRI	GACNNNNNGTC	1 cut(s)	60
BmeT110I	CYCGRG	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	2 cut(s)	285, 645
BmrFI	CCNGG	3 cut(s)	245, 246, 461
BmsI	GCATC	1 cut(s)	712
BpiI	GAAGAC	1 cut(s)	977
BplI	GAGNNNNNCTC	4 cut(s)	80, 112, 455, 487
BpmI	CTGGAG	1 cut(s)	482
Bpu10I	CCTNAGC	1 cut(s)	328
Bpu14I	TTCGAA	1 cut(s)	166
BpuMI	CCSGG	2 cut(s)	245, 246
Bsa29I	ATCGAT	1 cut(s)	138
BsaJI	CCNNGG	4 cut(s)	244, 279, 313, 794
BsaWI	WCCGGW	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 635
Bse1I	ACTGG	1 cut(s)	981
Bse3DI	GCAATG	2 cut(s)	519, 629
BseBI	CCWGG	1 cut(s)	461
BseCI	ATCGAT	1 cut(s)	138
BseDI	CCNNGG	4 cut(s)	244, 279, 313, 794
BseGI	GGATG	5 cut(s)	309, 336, 456, 703, 834
BseLI	CCNNNNNNNGG	2 cut(s)	245, 635
BseMI	GCAATG	2 cut(s)	519, 629
BseMII	CTCAG	5 cut(s)	134, 266, 342, 696, 1049
BseNI	ACTGG	1 cut(s)	981
BseRI	GAGGAG	1 cut(s)	670
BseXI	GCAGC	3 cut(s)	532, 577, 603
Bsh1236I	CGCG	1 cut(s)	133
Bsh1285I	CGRYCG	1 cut(s)	272
BshFI	GGCC	2 cut(s)	34, 677
BshNI	GGYRCC	1 cut(s)	643
BshVI	ATCGAT	1 cut(s)	138
BsiEI	CGRYCG	1 cut(s)	272
BsiHKAI	GWGCWC	2 cut(s)	216, 329
BsiHKCI	CYCGRG	1 cut(s)	244
BsiSI	CCGG	2 cut(s)	245, 272
BslFI	GGGAC	1 cut(s)	93
BslI	CCNNNNNNNGG	2 cut(s)	245, 635
BsmAI	GTCTC	1 cut(s)	240
BsmBI	CGTCTC	1 cut(s)	240
BsmFI	GGGAC	1 cut(s)	93
BsnI	GGCC	2 cut(s)	34, 677
BsoBI	CYCGRG	1 cut(s)	244
Bsp119I	TTCGAA	1 cut(s)	166
Bsp1286I	GDGCHC	2 cut(s)	216, 329
Bsp143I	GATC	5 cut(s)	139, 156, 604, 787, 799
Bsp19I	CCATGG	1 cut(s)	279
BspACI	CCGC	3 cut(s)	112, 239, 341
BspANI	GGCC	2 cut(s)	34, 677
BspCNI	CTCAG	5 cut(s)	133, 265, 341, 695, 1048
BspDI	ATCGAT	1 cut(s)	138
BspFNI	CGCG	1 cut(s)	133
BspLI	GGNNCC	2 cut(s)	285, 645
BspMAI	CTGCAG	1 cut(s)	550
BspPI	GGATC	3 cut(s)	134, 612, 807
BspT104I	TTCGAA	1 cut(s)	166
BspT107I	GGYRCC	1 cut(s)	643
BsrBI	CCGCTC	2 cut(s)	114, 241
BsrDI	GCAATG	2 cut(s)	519, 629
BsrI	ACTGG	1 cut(s)	981
BssECI	CCNNGG	4 cut(s)	244, 279, 313, 794
BssMI	GATC	5 cut(s)	139, 156, 604, 787, 799
BssT1I	CCWWGG	3 cut(s)	279, 313, 794
Bst2UI	CCWGG	1 cut(s)	461
Bst4CI	ACNGT	2 cut(s)	107, 904
Bst6I	CTCTTC	1 cut(s)	1006
BstBI	TTCGAA	1 cut(s)	166
BstC8I	GCNNGC	5 cut(s)	212, 294, 366, 469, 498
BstDEI	CTNAG	5 cut(s)	120, 252, 328, 682, 1035
BstDSI	CCRYGG	1 cut(s)	279
BstF5I	GGATG	5 cut(s)	309, 336, 456, 703, 834
BstFNI	CGCG	1 cut(s)	133
BstHHI	GCGC	2 cut(s)	133, 370
BstKTI	GATC	5 cut(s)	142, 159, 607, 790, 802
BstMAI	GTCTC	1 cut(s)	240
BstMBI	GATC	5 cut(s)	139, 156, 604, 787, 799
BstMCI	CGRYCG	1 cut(s)	272
BstMWI	GCNNNNNNNGC	5 cut(s)	130, 220, 302, 376, 926
BstNI	CCWGG	1 cut(s)	461
BstNSI	RCATGY	1 cut(s)	471
BstSCI	CCNGG	3 cut(s)	243, 244, 459
BstSFI	CTRYAG	1 cut(s)	546
BstUI	CGCG	1 cut(s)	133
BstV1I	GCAGC	3 cut(s)	532, 577, 603
BstV2I	GAAGAC	1 cut(s)	977
BstX2I	RGATCY	1 cut(s)	799
BstYI	RGATCY	1 cut(s)	799
Bsu15I	ATCGAT	1 cut(s)	138
BsuI	GTATCC	1 cut(s)	440
BsuRI	GGCC	2 cut(s)	34, 677
BsuTUI	ATCGAT	1 cut(s)	138
BtgI	CCRYGG	1 cut(s)	279
BtsCI	GGATG	5 cut(s)	309, 336, 456, 703, 834
Cac8I	GCNNGC	5 cut(s)	212, 294, 366, 469, 498
CfoI	GCGC	2 cut(s)	133, 370
Cfr13I	GGNCC	1 cut(s)	33
Cfr9I	CCCGGG	1 cut(s)	244
ClaI	ATCGAT	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	931
CviAII	CATG	2 cut(s)	280, 468
CviQI	GTAC	1 cut(s)	931
DdeI	CTNAG	5 cut(s)	120, 252, 328, 682, 1035
DpnI	GATC	5 cut(s)	141, 158, 606, 789, 801
DpnII	GATC	5 cut(s)	139, 156, 604, 787, 799
DriI	GACNNNNNGTC	1 cut(s)	60
Eam1104I	CTCTTC	1 cut(s)	1006
Eam1105I	GACNNNNNGTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	1006
Ecl136II	GAGCTC	2 cut(s)	214, 327
Eco130I	CCWWGG	3 cut(s)	279, 313, 794
Eco147I	AGGCCT	1 cut(s)	677
Eco24I	GRGCYC	2 cut(s)	216, 329
Eco53kI	GAGCTC	2 cut(s)	214, 327
Eco57I	CTGAAG	2 cut(s)	380, 987
Eco88I	CYCGRG	1 cut(s)	244
EcoICRI	GAGCTC	2 cut(s)	214, 327
EcoO109I	RGGNCCY	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	459
EcoT14I	CCWWGG	3 cut(s)	279, 313, 794
EcoT22I	ATGCAT	1 cut(s)	839
EcoT38I	GRGCYC	2 cut(s)	216, 329
ErhI	CCWWGG	3 cut(s)	279, 313, 794
Esp3I	CGTCTC	1 cut(s)	240
FaeI	CATG	2 cut(s)	283, 471
FaqI	GGGAC	1 cut(s)	93
FatI	CATG	2 cut(s)	279, 467
FauI	CCCGC	2 cut(s)	119, 348
FbaI	TGATCA	1 cut(s)	787
FblI	GTMKAC	1 cut(s)	392
Fnu4HI	GCNGC	3 cut(s)	546, 566, 617
FokI	GGATG	5 cut(s)	296, 323, 443, 690, 841
FriOI	GRGCYC	2 cut(s)	216, 329
Fsp4HI	GCNGC	3 cut(s)	546, 566, 617
GlaI	GCGC	2 cut(s)	132, 369
GluI	GCNGC	3 cut(s)	546, 566, 617
GsuI	CTGGAG	1 cut(s)	482
HaeIII	GGCC	2 cut(s)	34, 677
HapII	CCGG	2 cut(s)	245, 272
HhaI	GCGC	2 cut(s)	133, 370
Hin1II	CATG	2 cut(s)	283, 471
Hin6I	GCGC	2 cut(s)	131, 368
HinP1I	GCGC	2 cut(s)	131, 368
HincII	GTYRAC	1 cut(s)	393
HindII	GTYRAC	1 cut(s)	393
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	8 cut(s)	135, 168, 173, 374, 389, 394, 556, 1018
HpaII	CCGG	2 cut(s)	245, 272
Hpy166II	GTNNAC	2 cut(s)	180, 393
Hpy188I	TCNGA	6 cut(s)	255, 262, 360, 446, 666, 685
Hpy188III	TCNNGA	4 cut(s)	52, 217, 413, 707
Hpy8I	GTNNAC	2 cut(s)	180, 393
HpyAV	CCTTC	2 cut(s)	356, 365
HpyCH4III	ACNGT	2 cut(s)	107, 904
HpyCH4V	TGCA	8 cut(s)	4, 292, 548, 565, 591, 703, 837, 914
HpyF10VI	GCNNNNNNNGC	5 cut(s)	130, 220, 302, 376, 926
HpyF3I	CTNAG	5 cut(s)	120, 252, 328, 682, 1035
Hsp92II	CATG	2 cut(s)	283, 471
HspAI	GCGC	2 cut(s)	131, 368
Ksp22I	TGATCA	1 cut(s)	787
Kzo9I	GATC	5 cut(s)	139, 156, 604, 787, 799
LmnI	GCTCC	4 cut(s)	219, 246, 493, 868
Lsp1109I	GCAGC	3 cut(s)	532, 577, 603
LweI	GCATC	1 cut(s)	712
MaeIII	GTNAC	2 cut(s)	52, 886
MalI	GATC	5 cut(s)	141, 158, 606, 789, 801
MbiI	CCGCTC	2 cut(s)	114, 241
MboI	GATC	5 cut(s)	139, 156, 604, 787, 799
MboII	GAAGA	5 cut(s)	707, 710, 866, 977, 993
MfeI	CAATTG	1 cut(s)	964
MflI	RGATCY	1 cut(s)	799
MhlI	GDGCHC	2 cut(s)	216, 329
MluCI	AATT	6 cut(s)	46, 535, 575, 669, 964, 970
MlyI	GAGTC	3 cut(s)	383, 388, 398
MmeI	TCCRAC	1 cut(s)	846
Mph1103I	ATGCAT	1 cut(s)	839
MseI	TTAA	1 cut(s)	909
MspI	CCGG	2 cut(s)	245, 272
MspR9I	CCNGG	3 cut(s)	245, 246, 461
MunI	CAATTG	1 cut(s)	964
MvaI	CCWGG	1 cut(s)	461
MvnI	CGCG	1 cut(s)	133
MwoI	GCNNNNNNNGC	5 cut(s)	130, 220, 302, 376, 926
NciI	CCSGG	2 cut(s)	245, 246
NcoI	CCATGG	1 cut(s)	279
NdeII	GATC	5 cut(s)	139, 156, 604, 787, 799
NlaIII	CATG	2 cut(s)	283, 471
NlaIV	GGNNCC	2 cut(s)	285, 645
NmeAIII	GCCGAG	1 cut(s)	412
NmuCI	GTSAC	1 cut(s)	52
NsiI	ATGCAT	1 cut(s)	839
NspI	RCATGY	1 cut(s)	471
NspV	TTCGAA	1 cut(s)	166
PaeI	GCATGC	1 cut(s)	471
PceI	AGGCCT	1 cut(s)	677
PcsI	WCGNNNNNNNCGW	1 cut(s)	420
PfeI	GAWTC	5 cut(s)	135, 168, 173, 556, 1018
PfoI	TCCNGGA	1 cut(s)	459
PkrI	GCNGC	3 cut(s)	547, 567, 618
PleI	GAGTC	3 cut(s)	382, 388, 397
PpsI	GAGTC	3 cut(s)	382, 388, 397
Psp124BI	GAGCTC	2 cut(s)	216, 329
Psp6I	CCWGG	1 cut(s)	459
PspGI	CCWGG	1 cut(s)	459
PspN4I	GGNNCC	2 cut(s)	285, 645
PspPI	GGNCC	1 cut(s)	33
PstI	CTGCAG	1 cut(s)	550
PsuI	RGATCY	1 cut(s)	799
RsaI	GTAC	1 cut(s)	932
RsaNI	GTAC	1 cut(s)	931
SacI	GAGCTC	2 cut(s)	216, 329
SalI	GTCGAC	1 cut(s)	391
SaqAI	TTAA	1 cut(s)	909
SatI	GCNGC	3 cut(s)	546, 566, 617
Sau3AI	GATC	5 cut(s)	139, 156, 604, 787, 799
Sau96I	GGNCC	1 cut(s)	33
SchI	GAGTC	3 cut(s)	383, 388, 398
ScrFI	CCNGG	3 cut(s)	245, 246, 461
SduI	GDGCHC	2 cut(s)	216, 329
SfaNI	GCATC	1 cut(s)	712
SfcI	CTRYAG	1 cut(s)	546
SfuI	TTCGAA	1 cut(s)	166
SmaI	CCCGGG	1 cut(s)	246
SphI	GCATGC	1 cut(s)	471
Sse9I	AATT	6 cut(s)	46, 535, 575, 669, 964, 970
SseBI	AGGCCT	1 cut(s)	677
SsiI	CCGC	3 cut(s)	112, 239, 341
SstI	GAGCTC	2 cut(s)	216, 329
StuI	AGGCCT	1 cut(s)	677
StyD4I	CCNGG	3 cut(s)	243, 244, 459
StyI	CCWWGG	3 cut(s)	279, 313, 794
TaaI	ACNGT	2 cut(s)	107, 904
TasI	AATT	6 cut(s)	46, 535, 575, 669, 964, 970
TfiI	GAWTC	5 cut(s)	135, 168, 173, 556, 1018
Tru1I	TTAA	1 cut(s)	909
Tru9I	TTAA	1 cut(s)	909
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	3 cut(s)	545, 565, 616
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	2 cut(s)	141, 568
TspMI	CCCGGG	1 cut(s)	244
XapI	RAATTY	3 cut(s)	575, 669, 970
XceI	RCATGY	1 cut(s)	471
XmaI	CCCGGG	1 cut(s)	244
XmiI	GTMKAC	1 cut(s)	392
Zsp2I	ATGCAT	1 cut(s)	839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.