Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0015725

Physical Location & Seq

Genomic Coordinates Forward (+)

1882090 .. 1882610

Gene Structure 521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAAGAACGATGCTGCCAACATTCGAGAAGATGAGGTTGGTGCCAAAGCTGAAGAGGATGAACGCAAAACCATCACACACCAAACAGTATTTGATCACGTACGTGAAAAAGGCAAAGAACTTGGGAACTTCCTTGTCTTGGTGGCATCAAATGGTGTGCATTCTGCATCCTCAGAGCCCTTGGTTTTGACAAGAAAACGTACTCGTGAGAATTGGAATGCAATAAAAATTCCAAGACGGACTGCGGTGAATCCATCTTCAGAACCCAAAGAGGCAGAACAAAAGCAACATAACATGAACAATCTCCCTACTCCCAGAAGCTCAGCTACCGCGAACCTGATGGATGACAGAGGTAGGATCGTTACCCGAATACACACTCAAACACATACTAATCACTCTTTAGTTCTTATATATGTAATGTGGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048285 GO:0051321 GO:0061982 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140013 GO:0140098 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HHH_5 Helicase_C PPR Sec63

Protein Analysis

143

Amino Acids

16.16

Weight (kDa)

9.39

Isoelectric Point (pI)

35.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015725)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g02830
rosa_chinensis	RchiOBHm_Chr4g0442241 RchiOBHm_Chr5g0056781 RchiOBHm_Chr5g0073021
rosa_laevigata	RLG00000003772 RLG00000011061 RLG00000013117 RLG00000015920 RLG00000017682 RLG00000036400
rosa_multiflora	Rmu_sc0005220.1_g000044 Rmu_sc0010369.1_g000010 Rmu_sc0019790.1_g000002
rosa_roxburghii	Rroxscaffold_5G00371710 Rroxscaffold_5G00371720 Rroxscaffold_7G00178540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	41
AccII	CGCG	1 cut(s)	332
AciI	CCGC	2 cut(s)	245, 330
AclWI	GGATC	1 cut(s)	365
AcsI	RAATTY	1 cut(s)	228
AcuI	CTGAAG	2 cut(s)	72, 243
AfaI	GTAC	2 cut(s)	102, 202
AfiI	CCNNNNNNNGG	1 cut(s)	139
AjuI	GAANNNNNNNTTGG	2 cut(s)	21, 53
AleI	CACNNNNGTG	1 cut(s)	102
AluBI	AGCT	3 cut(s)	50, 321, 326
AluI	AGCT	3 cut(s)	50, 321, 326
AlwI	GGATC	1 cut(s)	365
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	1 cut(s)	228
AsuHPI	GGTGA	1 cut(s)	259
BanI	GGYRCC	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	180
BarI	GAAGNNNNNNTAC	2 cut(s)	310, 342
BauI	CACGAG	1 cut(s)	204
BccI	CCATC	3 cut(s)	80, 262, 334
BclI	TGATCA	1 cut(s)	94
BisI	GCNGC	1 cut(s)	15
BlpI	GCTNAGC	1 cut(s)	322
BlsI	GCNGC	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	43
BmsI	GCATC	2 cut(s)	155, 176
Bpu1102I	GCTNAGC	1 cut(s)	322
BsaAI	YACGTR	2 cut(s)	100, 104
BsaJI	CCNNGG	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	4 cut(s)	64, 167, 349, 429
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseMII	CTCAG	2 cut(s)	186, 336
Bsh1236I	CGCG	1 cut(s)	332
BshNI	GGYRCC	1 cut(s)	41
BsiWI	CGTACG	1 cut(s)	100
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmI	GAATGC	2 cut(s)	160, 223
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	94, 357
Bsp1720I	GCTNAGC	1 cut(s)	322
BspACI	CCGC	2 cut(s)	245, 330
BspCNI	CTCAG	2 cut(s)	185, 335
BspFNI	CGCG	1 cut(s)	332
BspLI	GGNNCC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	365
BspT107I	GGYRCC	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	2 cut(s)	94, 357
BssSI	CACGAG	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	180
Bst2BI	CACGAG	1 cut(s)	204
Bst4CI	ACNGT	1 cut(s)	88
Bst6I	CTCTTC	1 cut(s)	48
BstBAI	YACGTR	2 cut(s)	100, 104
BstDEI	CTNAG	2 cut(s)	172, 322
BstF5I	GGATG	4 cut(s)	64, 167, 349, 429
BstFNI	CGCG	1 cut(s)	332
BstKTI	GATC	2 cut(s)	97, 360
BstMBI	GATC	2 cut(s)	94, 357
BstUI	CGCG	1 cut(s)	332
BtsCI	GGATG	4 cut(s)	64, 167, 349, 429
Csp6I	GTAC	2 cut(s)	101, 201
CviAII	CATG	1 cut(s)	295
CviJI	RGCY	4 cut(s)	50, 178, 321, 326
CviKI_1	RGCY	4 cut(s)	50, 178, 321, 326
CviQI	GTAC	2 cut(s)	101, 201
DdeI	CTNAG	2 cut(s)	172, 322
DpnI	GATC	2 cut(s)	96, 359
DpnII	GATC	2 cut(s)	94, 357
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	180
Eco24I	GRGCYC	1 cut(s)	180
Eco57I	CTGAAG	2 cut(s)	72, 243
EcoT14I	CCWWGG	1 cut(s)	180
EcoT38I	GRGCYC	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	1 cut(s)	298
FaiI	YATR	6 cut(s)	291, 296, 387, 410, 412, 414
FatI	CATG	1 cut(s)	294
FbaI	TGATCA	1 cut(s)	94
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	3 cut(s)	71, 154, 356
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	1 cut(s)	15
GluI	GCNGC	1 cut(s)	15
Hin1II	CATG	1 cut(s)	298
HinfI	GANTC	1 cut(s)	250
HphI	GGTGA	1 cut(s)	259
Hpy188I	TCNGA	2 cut(s)	175, 262
Hpy188III	TCNNGA	2 cut(s)	26, 206
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4IV	ACGT	3 cut(s)	99, 103, 199
HpyCH4V	TGCA	3 cut(s)	160, 167, 221
HpyF3I	CTNAG	2 cut(s)	172, 322
HpySE526I	ACGT	3 cut(s)	99, 103, 199
Hsp92II	CATG	1 cut(s)	298
Ksp22I	TGATCA	1 cut(s)	94
Kzo9I	GATC	2 cut(s)	94, 357
LpnPI	CCDG	2 cut(s)	328, 350
LweI	GCATC	2 cut(s)	155, 176
MaeII	ACGT	3 cut(s)	99, 103, 199
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	2 cut(s)	96, 359
MboI	GATC	2 cut(s)	94, 357
MboII	GAAGA	4 cut(s)	16, 41, 65, 249
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	2 cut(s)	211, 228
MnlI	CCTC	5 cut(s)	28, 49, 181, 265, 344
MslI	CAYNNNNRTG	1 cut(s)	102
Mva1269I	GAATGC	2 cut(s)	160, 223
MvnI	CGCG	1 cut(s)	332
NdeII	GATC	2 cut(s)	94, 357
NlaIII	CATG	1 cut(s)	298
NlaIV	GGNNCC	1 cut(s)	43
OliI	CACNNNNGTG	1 cut(s)	102
PctI	GAATGC	2 cut(s)	160, 223
PfeI	GAWTC	1 cut(s)	250
Pfl23II	CGTACG	1 cut(s)	100
PkrI	GCNGC	1 cut(s)	16
Ppu21I	YACGTR	2 cut(s)	100, 104
PspLI	CGTACG	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	43
RsaI	GTAC	2 cut(s)	102, 202
RsaNI	GTAC	2 cut(s)	101, 201
RseI	CAYNNNNRTG	1 cut(s)	102
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	2 cut(s)	94, 357
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	9 cut(s)	39, 52, 102, 106, 202, 323, 328, 339, 355
SfaNI	GCATC	2 cut(s)	155, 176
SmiMI	CAYNNNNRTG	1 cut(s)	102
Sse9I	AATT	2 cut(s)	211, 228
SsiI	CCGC	2 cut(s)	245, 330
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	88
TaiI	ACGT	3 cut(s)	102, 106, 202
TaqI	TCGA	1 cut(s)	25
TasI	AATT	2 cut(s)	211, 228
TfiI	GAWTC	1 cut(s)	250
TseI	GCWGC	1 cut(s)	14
TspDTI	ATGAA	3 cut(s)	17, 75, 311
TspGWI	ACGGA	1 cut(s)	253
XapI	RAATTY	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.