Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0015725

Physical Location & Seq

Genomic Coordinates Reverse (-)

6427333 .. 6428190

Gene Structure 858 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011061

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGAGTATAAATTTGCAGCAGTGAAGCTGACACTCAGTAAAATTAGGTCTGATAGGAATGGAGAGAGTGTTGATGCCAATTTCAGCATCAAGGAGTTAACGAGACTTTCGTTGAAATCTAAGTGTAAAGTATGCCCTAGTGGTCCTGTGCTTGGTTTTGGTCATCCACCTCTTGTGACTGAATGTACAGCCTTGGGCTTCTTTCACCTGATGTTAGGCGACCAAGCTCCCTTGTTGGGTGAAACAGATAGTTTTGCCTTGGGCTTCTTTCGCCTGACCTTGGGCCTCCATGCTCCTTTGTTAGCATCCAGTCTGGCTTGGGCGTACAATATCCTCCACCTGACACTAGGCATCCAGCTCCTTGAGTTGGCGGAGCTCCATGGAAATGACCTGCAAATGTTAAGAGATGGAAAGTTATCGGAGGACCAGCCTAAGGCAGGCCAAACACACTCCGATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

16.65

Weight (kDa)

6.28

Isoelectric Point (pI)

30.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015725)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g02830
rosa_chinensis	RchiOBHm_Chr4g0442241 RchiOBHm_Chr5g0056781 RchiOBHm_Chr5g0073021
rosa_laevigata	RLG00000003772 RLG00000011061 RLG00000013117 RLG00000015920 RLG00000017682 RLG00000036400
rosa_multiflora	Rmu_sc0005220.1_g000044 Rmu_sc0010369.1_g000010 Rmu_sc0019790.1_g000002
rosa_roxburghii	Rroxscaffold_5G00371710 Rroxscaffold_5G00371720 Rroxscaffold_7G00178540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	399
AciI	CCGC	1 cut(s)	371
AcsI	RAATTY	1 cut(s)	11
AfaI	GTAC	2 cut(s)	187, 326
AfiI	CCNNNNNNNGG	6 cut(s)	152, 236, 280, 367, 433, 437
AgsI	TTSAA	1 cut(s)	115
AluBI	AGCT	4 cut(s)	28, 227, 358, 376
AluI	AGCT	4 cut(s)	28, 227, 358, 376
Alw21I	GWGCWC	1 cut(s)	378
Alw26I	GTCTC	1 cut(s)	97
AoxI	GGCC	2 cut(s)	283, 439
ApeKI	GCWGC	1 cut(s)	17
ApoI	RAATTY	1 cut(s)	11
AspS9I	GGNCC	3 cut(s)	143, 283, 424
AsuHPI	GGTGA	2 cut(s)	197, 251
AvaII	GGWCC	2 cut(s)	143, 424
AxyI	CCTNAGG	1 cut(s)	432
BanII	GRGCYC	1 cut(s)	378
Bbv12I	GWGCWC	1 cut(s)	378
BbvI	GCAGC	1 cut(s)	29
BccI	CCATC	1 cut(s)	401
BcoDI	GTCTC	1 cut(s)	97
BfaI	CTAG	2 cut(s)	138, 347
BfuAI	ACCTGC	1 cut(s)	399
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
Bme18I	GGWCC	2 cut(s)	143, 424
BmgT120I	GGNCC	3 cut(s)	143, 283, 424
BmsI	GCATC	5 cut(s)	64, 96, 314, 360, 445
BpuEI	CTTGAG	1 cut(s)	383
BsaJI	CCNNGG	4 cut(s)	192, 258, 279, 379
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bsc4I	CCNNNNNNNGG	6 cut(s)	152, 236, 280, 367, 433, 437
Bse1I	ACTGG	1 cut(s)	309
Bse21I	CCTNAGG	1 cut(s)	432
BseDI	CCNNGG	4 cut(s)	192, 258, 279, 379
BseGI	GGATG	3 cut(s)	163, 305, 351
BseLI	CCNNNNNNNGG	6 cut(s)	152, 236, 280, 367, 433, 437
BseMII	CTCAG	1 cut(s)	49
BseNI	ACTGG	1 cut(s)	309
BseXI	GCAGC	1 cut(s)	29
BshFI	GGCC	2 cut(s)	285, 441
BsiHKAI	GWGCWC	1 cut(s)	378
BslI	CCNNNNNNNGG	6 cut(s)	152, 236, 280, 367, 433, 437
BsmAI	GTCTC	1 cut(s)	97
BsnI	GGCC	2 cut(s)	285, 441
Bsp1286I	GDGCHC	1 cut(s)	378
Bsp1407I	TGTACA	1 cut(s)	185
Bsp19I	CCATGG	1 cut(s)	379
BspACI	CCGC	1 cut(s)	371
BspANI	GGCC	2 cut(s)	285, 441
BspCNI	CTCAG	1 cut(s)	48
BspMI	ACCTGC	1 cut(s)	399
BsrGI	TGTACA	1 cut(s)	185
BsrI	ACTGG	1 cut(s)	309
BssECI	CCNNGG	4 cut(s)	192, 258, 279, 379
BssT1I	CCWWGG	4 cut(s)	192, 258, 279, 379
BstAUI	TGTACA	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	439
BstDEI	CTNAG	3 cut(s)	35, 120, 432
BstDSI	CCRYGG	1 cut(s)	379
BstENI	CCTNNNNNAGG	1 cut(s)	435
BstF5I	GGATG	3 cut(s)	163, 305, 351
BstMAI	GTCTC	1 cut(s)	97
BstMWI	GCNNNNNNNGC	1 cut(s)	270
BstV1I	GCAGC	1 cut(s)	29
Bsu36I	CCTNAGG	1 cut(s)	432
BsuRI	GGCC	2 cut(s)	285, 441
BtgI	CCRYGG	1 cut(s)	379
BtsCI	GGATG	3 cut(s)	163, 305, 351
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	27
BveI	ACCTGC	1 cut(s)	399
Cac8I	GCNNGC	1 cut(s)	439
Cfr13I	GGNCC	3 cut(s)	143, 283, 424
Csp6I	GTAC	2 cut(s)	186, 325
CviAII	CATG	2 cut(s)	290, 380
CviQI	GTAC	2 cut(s)	186, 325
DdeI	CTNAG	3 cut(s)	35, 120, 432
EciI	GGCGGA	1 cut(s)	386
Ecl136II	GAGCTC	1 cut(s)	376
Eco130I	CCWWGG	4 cut(s)	192, 258, 279, 379
Eco24I	GRGCYC	1 cut(s)	378
Eco47I	GGWCC	2 cut(s)	143, 424
Eco53kI	GAGCTC	1 cut(s)	376
Eco81I	CCTNAGG	1 cut(s)	432
EcoICRI	GAGCTC	1 cut(s)	376
EcoNI	CCTNNNNNAGG	1 cut(s)	435
EcoT14I	CCWWGG	4 cut(s)	192, 258, 279, 379
EcoT38I	GRGCYC	1 cut(s)	378
ErhI	CCWWGG	4 cut(s)	192, 258, 279, 379
FaeI	CATG	2 cut(s)	293, 383
FaiI	YATR	4 cut(s)	9, 133, 291, 381
FatI	CATG	2 cut(s)	289, 379
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	3 cut(s)	150, 292, 338
FriOI	GRGCYC	1 cut(s)	378
Fsp4HI	GCNGC	1 cut(s)	18
FspBI	CTAG	2 cut(s)	138, 347
GluI	GCNGC	1 cut(s)	18
HaeIII	GGCC	2 cut(s)	285, 441
Hin1II	CATG	2 cut(s)	293, 383
HincII	GTYRAC	1 cut(s)	99
HindII	GTYRAC	1 cut(s)	99
HpaI	GTTAAC	1 cut(s)	99
HphI	GGTGA	2 cut(s)	197, 251
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	3 cut(s)	52, 421, 454
Hpy8I	GTNNAC	1 cut(s)	99
HpyCH4V	TGCA	2 cut(s)	17, 394
HpyF10VI	GCNNNNNNNGC	1 cut(s)	270
HpyF3I	CTNAG	3 cut(s)	35, 120, 432
Hsp92II	CATG	2 cut(s)	293, 383
KspAI	GTTAAC	1 cut(s)	99
LmnI	GCTCC	5 cut(s)	232, 298, 363, 373, 381
Lsp1109I	GCAGC	1 cut(s)	29
LweI	GCATC	5 cut(s)	64, 96, 314, 360, 445
MaeI	CTAG	2 cut(s)	138, 347
MaeIII	GTNAC	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	378
MluCI	AATT	3 cut(s)	11, 42, 79
MnlI	CCTC	4 cut(s)	180, 296, 344, 415
MseI	TTAA	2 cut(s)	98, 401
MslI	CAYNNNNRTG	2 cut(s)	384, 453
MwoI	GCNNNNNNNGC	1 cut(s)	270
NcoI	CCATGG	1 cut(s)	379
NlaIII	CATG	2 cut(s)	293, 383
NmuCI	GTSAC	1 cut(s)	175
PcsI	WCGNNNNNNNCGW	1 cut(s)	107
PkrI	GCNGC	1 cut(s)	19
Psp124BI	GAGCTC	1 cut(s)	378
PspPI	GGNCC	3 cut(s)	143, 283, 424
RsaI	GTAC	2 cut(s)	187, 326
RsaNI	GTAC	2 cut(s)	186, 325
RseI	CAYNNNNRTG	2 cut(s)	384, 453
SacI	GAGCTC	1 cut(s)	378
SaqAI	TTAA	2 cut(s)	98, 401
SatI	GCNGC	1 cut(s)	18
Sau96I	GGNCC	3 cut(s)	143, 283, 424
SduI	GDGCHC	1 cut(s)	378
SfaNI	GCATC	5 cut(s)	64, 96, 314, 360, 445
SinI	GGWCC	2 cut(s)	143, 424
SmiMI	CAYNNNNRTG	2 cut(s)	384, 453
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	3 cut(s)	11, 42, 79
SsiI	CCGC	1 cut(s)	371
SspMI	CTAG	2 cut(s)	138, 347
SstI	GAGCTC	1 cut(s)	378
StyI	CCWWGG	4 cut(s)	192, 258, 279, 379
TasI	AATT	3 cut(s)	11, 42, 79
TatI	WGTACW	1 cut(s)	185
Tru1I	TTAA	2 cut(s)	98, 401
Tru9I	TTAA	2 cut(s)	98, 401
TscAI	CASTG	1 cut(s)	27
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	175
TspRI	CASTG	1 cut(s)	27
VpaK11BI	GGWCC	2 cut(s)	143, 424
XagI	CCTNNNNNAGG	1 cut(s)	435
XapI	RAATTY	1 cut(s)	11
XspI	CTAG	2 cut(s)	138, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.