Rmu_sc0005220.1_g000044

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005220.1
OG0015725
Physical Location & Seq
Reverse (-)
169718 .. 170405
688 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005220.1_g000044.1.cds

Sequence Viewer

Length: 579 bp
atgttgacgccggcgacggctttggctgtccgtacatcagctgtgatgacgcggcgaggtggtagggcgggatctgggcaacgtagaatgaggttttccgataatcgtaatccattgattggagatcggagacagaatcacagagacgacgaagaggaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaaggaatacactcgaaggagggcgaggatgggatgggtgtttggaaaagtgaggctcctggaaatctccctgagaatttgagagagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

23.36

Weight (kDa)

4.05

Isoelectric Point (pI)

217.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 119
AccII CGCG 1 cut(s) 52
AciI CCGC 2 cut(s) 52, 68
AclWI GGATC 1 cut(s) 79
AcsI RAATTY 1 cut(s) 565
AcyI GRCGYC 1 cut(s) 8
AfaI GTAC 1 cut(s) 34
AfiI CCNNNNNNNGG 1 cut(s) 119
AjnI CCWGG 1 cut(s) 547
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
Alw26I GTCTC 2 cut(s) 124, 138
AlwI GGATC 1 cut(s) 79
ApoI RAATTY 1 cut(s) 565
BarI GAAGNNNNNNTAC 2 cut(s) 480, 512
BccI CCATC 2 cut(s) 512, 517
BceAI ACGGC 1 cut(s) 33
BciT130I CCWGG 1 cut(s) 549
BcoDI GTCTC 2 cut(s) 124, 138
BisI GCNGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 54
Bme1390I CCNGG 1 cut(s) 549
BmiI GGNNCC 1 cut(s) 546
BmrFI CCNGG 1 cut(s) 549
BsaHI GRCGYC 1 cut(s) 8
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse118I RCCGGY 1 cut(s) 10
BseBI CCWGG 1 cut(s) 549
BseGI GGATG 2 cut(s) 523, 528
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMII CTCAG 1 cut(s) 552
Bsh1236I CGCG 1 cut(s) 52
BsiSI CCGG 1 cut(s) 11
BslI CCNNNNNNNGG 1 cut(s) 119
BsmAI GTCTC 2 cut(s) 124, 138
BsmBI CGTCTC 1 cut(s) 138
Bsp143I GATC 2 cut(s) 71, 124
BspACI CCGC 2 cut(s) 52, 68
BspCNI CTCAG 1 cut(s) 553
BspFNI CGCG 1 cut(s) 52
BspLI GGNNCC 1 cut(s) 546
BspPI GGATC 1 cut(s) 79
BsrFI RCCGGY 1 cut(s) 10
BssAI RCCGGY 1 cut(s) 10
BssMI GATC 2 cut(s) 71, 124
BssNI GRCGYC 1 cut(s) 8
Bst2UI CCWGG 1 cut(s) 549
Bst6I CTCTTC 1 cut(s) 147
BstACI GRCGYC 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 12
BstDEI CTNAG 1 cut(s) 561
BstF5I GGATG 2 cut(s) 523, 528
BstFNI CGCG 1 cut(s) 52
BstKTI GATC 2 cut(s) 74, 127
BstMAI GTCTC 2 cut(s) 124, 138
BstMBI GATC 2 cut(s) 71, 124
BstNI CCWGG 1 cut(s) 549
BstSCI CCNGG 1 cut(s) 547
BstUI CGCG 1 cut(s) 52
BstX2I RGATCY 1 cut(s) 71
BstYI RGATCY 1 cut(s) 71
BtsCI GGATG 2 cut(s) 523, 528
Cac8I GCNNGC 1 cut(s) 12
Cfr10I RCCGGY 1 cut(s) 10
CseI GACGC 2 cut(s) 16, 58
Csp6I GTAC 1 cut(s) 33
CviJI RGCY 4 cut(s) 20, 26, 41, 545
CviKI_1 RGCY 4 cut(s) 20, 26, 41, 545
CviQI GTAC 1 cut(s) 33
DdeI CTNAG 1 cut(s) 561
DpnI GATC 2 cut(s) 73, 126
DpnII GATC 2 cut(s) 71, 124
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 547
Esp3I CGTCTC 1 cut(s) 138
FauI CCCGC 1 cut(s) 61
Fnu4HI GCNGC 1 cut(s) 53
FokI GGATG 2 cut(s) 530, 535
Fsp4HI GCNGC 1 cut(s) 53
GluI GCNGC 1 cut(s) 53
HapII CCGG 1 cut(s) 11
HgaI GACGC 2 cut(s) 16, 58
Hin1I GRCGYC 1 cut(s) 8
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 1 cut(s) 136
HpaII CCGG 1 cut(s) 11
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 2 cut(s) 100, 129
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 2 cut(s) 19, 152
HpyAV CCTTC 2 cut(s) 485, 499
HpyCH4IV ACGT 1 cut(s) 82
HpyF3I CTNAG 1 cut(s) 561
HpySE526I ACGT 1 cut(s) 82
Hsp92I GRCGYC 1 cut(s) 8
KroI GCCGGC 1 cut(s) 10
KroNI GCCGGC 1 cut(s) 12
Kzo9I GATC 2 cut(s) 71, 124
LmnI GCTCC 1 cut(s) 550
LpnPI CCDG 5 cut(s) 24, 60, 534, 561, 573
MaeII ACGT 1 cut(s) 82
MalI GATC 2 cut(s) 73, 126
MboI GATC 2 cut(s) 71, 124
MflI RGATCY 1 cut(s) 71
MluCI AATT 1 cut(s) 565
MnlI CCTC 6 cut(s) 50, 84, 148, 502, 508, 535
MreI CGCCGGCG 1 cut(s) 10
MroNI GCCGGC 1 cut(s) 10
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 549
MvaI CCWGG 1 cut(s) 549
MvnI CGCG 1 cut(s) 52
NaeI GCCGGC 1 cut(s) 12
NdeII GATC 2 cut(s) 71, 124
NgoMIV GCCGGC 1 cut(s) 10
NlaIV GGNNCC 1 cut(s) 546
PdiI GCCGGC 1 cut(s) 12
PfeI GAWTC 1 cut(s) 136
PflMI CCANNNNNTGG 1 cut(s) 119
PfoI TCCNGGA 1 cut(s) 547
PkrI GCNGC 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 547
PspGI CCWGG 1 cut(s) 547
PspN4I GGNNCC 1 cut(s) 546
PsuI RGATCY 1 cut(s) 71
PvuII CAGCTG 1 cut(s) 41
RsaI GTAC 1 cut(s) 34
RsaNI GTAC 1 cut(s) 33
SatI GCNGC 1 cut(s) 53
Sau3AI GATC 2 cut(s) 71, 124
ScrFI CCNGG 1 cut(s) 549
SetI ASST 4 cut(s) 43, 61, 85, 95
SgrAI CRCCGGYG 1 cut(s) 10
Sse9I AATT 1 cut(s) 565
SsiI CCGC 2 cut(s) 52, 68
StyD4I CCNGG 1 cut(s) 547
TaiI ACGT 1 cut(s) 85
TaqI TCGA 1 cut(s) 503
TasI AATT 1 cut(s) 565
TauI GCSGC 1 cut(s) 55
TfiI GAWTC 1 cut(s) 136
TspGWI ACGGA 1 cut(s) 20
Van91I CCANNNNNTGG 1 cut(s) 119
XapI RAATTY 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.