Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019790.1

Orthogroup ID

OG0015725

Physical Location & Seq

Genomic Coordinates Reverse (-)

5034 .. 7040

Gene Structure 2007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019790.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atgatacaatattttctacagcattatctcccaccacctcaacaaccacacccaccactcgccgccgccgcctcaaaccccacagactccgctttaaccgcctccgcctcctctgcggagcccaagctccgagaccacgtggacctccaccgccatgccgccgccgtctacgtgggatttctgggacccttttgtgccggcttcgtctcggtcggtgaccgaggaggaatgggaggctacgaccaccgcgtcggaggccgtggttacgactatcaccgtggcgtcgccttcgatgaggttgccgacaaagttcatgaagatgagtttgctgccaaagttcaaactgatgacaaagttgtgacacaacaaacagtatttgaccacatacgtgaaaaggcaaagaacttccctatcttggtgtcctcaaatagtgtgcttcctccatcatcagagcccttggaattagcaaggaaacgtgctcgtgagaagaagcttggaccggaaagtggagtagagattctagaagaattagaatggaataaagttccaaggcgaactgtggtcaatccattttcagaacttaaagaagcagtatgccctggtagtcctgtgcctagccttggtcgttcaccactagtgactgaaggtatggcctcgggcttccttcacctgatcctgggcctccaagctaccttgtttggtgaaactgatagtctcgtctcgaacttccttcacctggtgttgggcttcgtccacctaatgttgggcttccaagctcctttcttgggtggaattgatggcctcacgtcgggcttcctccacctcgttttgggcttccaagctctttgttgggtgaagctaatagtctcgtctcggacttccttcacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048285 GO:0051321 GO:0061982 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140013 GO:0140098 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HHH_5 Helicase_C PPR Sec63

Protein Analysis

296

Amino Acids

32.16

Weight (kDa)

6.22

Isoelectric Point (pI)

47.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015725)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g02830
rosa_chinensis	RchiOBHm_Chr4g0442241 RchiOBHm_Chr5g0056781 RchiOBHm_Chr5g0073021
rosa_laevigata	RLG00000003772 RLG00000011061 RLG00000013117 RLG00000015920 RLG00000017682 RLG00000036400
rosa_multiflora	Rmu_sc0005220.1_g000044 Rmu_sc0010369.1_g000010 Rmu_sc0019790.1_g000002
rosa_roxburghii	Rroxscaffold_5G00371710 Rroxscaffold_5G00371720 Rroxscaffold_7G00178540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	248
AccI	GTMKAC	1 cut(s)	168
AccII	CGCG	1 cut(s)	249
AclWI	GGATC	1 cut(s)	667
AcuI	CTGAAG	1 cut(s)	663
AcvI	CACGTG	1 cut(s)	139
AcyI	GRCGYC	1 cut(s)	282
AdeI	CACNNNGTG	1 cut(s)	739
AgsI	TTSAA	1 cut(s)	341
AhlI	ACTAGT	1 cut(s)	634
AjiI	CACGTC	1 cut(s)	807
AjnI	CCWGG	3 cut(s)	598, 675, 735
AleI	CACNNNNGTG	1 cut(s)	387
AluBI	AGCT	6 cut(s)	127, 493, 689, 776, 842, 859
AluI	AGCT	6 cut(s)	127, 493, 689, 776, 842, 859
Alw21I	GWGCWC	1 cut(s)	481
Alw26I	GTCTC	6 cut(s)	126, 211, 719, 724, 871, 876
AlwI	GGATC	1 cut(s)	667
Ama87I	CYCGRG	1 cut(s)	655
AoxI	GGCC	4 cut(s)	256, 651, 679, 799
ApeKI	GCWGC	1 cut(s)	329
AspS9I	GGNCC	4 cut(s)	142, 185, 497, 679
AsuHPI	GGTGA	8 cut(s)	227, 266, 621, 659, 713, 725, 865, 877
AvaI	CYCGRG	1 cut(s)	655
AvaII	GGWCC	3 cut(s)	142, 185, 497
BanII	GRGCYC	2 cut(s)	123, 456
BauI	CACGAG	1 cut(s)	480
BbrPI	CACGTG	1 cut(s)	139
Bbv12I	GWGCWC	1 cut(s)	481
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	2 cut(s)	451, 791
BceAI	ACGGC	2 cut(s)	149, 243
BcgI	CGANNNNNNTGC	2 cut(s)	281, 315
BciT130I	CCWGG	3 cut(s)	600, 677, 737
BcoDI	GTCTC	6 cut(s)	126, 211, 719, 724, 871, 876
BcuI	ACTAGT	1 cut(s)	634
BfaI	CTAG	3 cut(s)	521, 615, 635
BfmI	CTRYAG	1 cut(s)	17
BisI	GCNGC	6 cut(s)	63, 66, 69, 159, 162, 330
BlsI	GCNGC	6 cut(s)	64, 67, 70, 160, 163, 331
Bme1390I	CCNGG	3 cut(s)	600, 677, 737
Bme18I	GGWCC	3 cut(s)	142, 185, 497
BmeT110I	CYCGRG	1 cut(s)	655
BmgBI	CACGTC	1 cut(s)	807
BmgT120I	GGNCC	4 cut(s)	142, 185, 497, 679
BmiI	GGNNCC	3 cut(s)	120, 186, 187
BmrFI	CCNGG	3 cut(s)	600, 677, 737
BsaAI	YACGTR	3 cut(s)	139, 172, 389
BsaHI	GRCGYC	1 cut(s)	282
BsaI	GGTCTC	1 cut(s)	126
BsaJI	CCNNGG	9 cut(s)	220, 259, 277, 456, 548, 598, 619, 654, 676
BsaWI	WCCGGW	1 cut(s)	499
Bse118I	RCCGGY	1 cut(s)	197
BseBI	CCWGG	3 cut(s)	600, 677, 737
BseDI	CCNNGG	9 cut(s)	220, 259, 277, 456, 548, 598, 619, 654, 676
BseRI	GAGGAG	2 cut(s)	100, 237
BseXI	GCAGC	1 cut(s)	316
Bsh1236I	CGCG	1 cut(s)	249
Bsh1285I	CGRYCG	1 cut(s)	213
BshFI	GGCC	4 cut(s)	258, 653, 681, 801
BsiEI	CGRYCG	1 cut(s)	213
BsiHKAI	GWGCWC	1 cut(s)	481
BsiHKCI	CYCGRG	1 cut(s)	655
BsiSI	CCGG	2 cut(s)	198, 500
BslFI	GGGAC	1 cut(s)	198
BsmAI	GTCTC	6 cut(s)	126, 211, 719, 724, 871, 876
BsmBI	CGTCTC	3 cut(s)	211, 724, 876
BsmFI	GGGAC	1 cut(s)	198
BsnI	GGCC	4 cut(s)	258, 653, 681, 801
Bso31I	GGTCTC	1 cut(s)	126
BsoBI	CYCGRG	1 cut(s)	655
Bsp1286I	GDGCHC	3 cut(s)	123, 456, 481
Bsp143I	GATC	1 cut(s)	672
BspANI	GGCC	4 cut(s)	258, 653, 681, 801
BspFNI	CGCG	1 cut(s)	249
BspHI	TCATGA	1 cut(s)	313
BspLI	GGNNCC	3 cut(s)	120, 186, 187
BspPI	GGATC	1 cut(s)	667
BspTNI	GGTCTC	1 cut(s)	126
BsrFI	RCCGGY	1 cut(s)	197
BssAI	RCCGGY	1 cut(s)	197
BssECI	CCNNGG	9 cut(s)	220, 259, 277, 456, 548, 598, 619, 654, 676
BssMI	GATC	1 cut(s)	672
BssNI	GRCGYC	1 cut(s)	282
BssSI	CACGAG	1 cut(s)	480
BssT1I	CCWWGG	3 cut(s)	456, 548, 619
Bst2BI	CACGAG	1 cut(s)	480
Bst2UI	CCWGG	3 cut(s)	600, 677, 737
Bst4CI	ACNGT	3 cut(s)	278, 373, 559
BstACI	GRCGYC	1 cut(s)	282
BstBAI	YACGTR	3 cut(s)	139, 172, 389
BstC8I	GCNNGC	1 cut(s)	199
BstDSI	CCRYGG	2 cut(s)	259, 277
BstEII	GGTNACC	1 cut(s)	215
BstFNI	CGCG	1 cut(s)	249
BstKTI	GATC	1 cut(s)	675
BstMAI	GTCTC	6 cut(s)	126, 211, 719, 724, 871, 876
BstMBI	GATC	1 cut(s)	672
BstMCI	CGRYCG	1 cut(s)	213
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 98, 113, 255
BstNI	CCWGG	3 cut(s)	600, 677, 737
BstPI	GGTNACC	1 cut(s)	215
BstSCI	CCNGG	3 cut(s)	598, 675, 735
BstSFI	CTRYAG	1 cut(s)	17
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	316
BsuRI	GGCC	4 cut(s)	258, 653, 681, 801
BtgI	CCRYGG	2 cut(s)	259, 277
BtrI	CACGTC	1 cut(s)	807
Cac8I	GCNNGC	1 cut(s)	199
CciI	TCATGA	1 cut(s)	313
Cfr10I	RCCGGY	1 cut(s)	197
Cfr13I	GGNCC	4 cut(s)	142, 185, 497, 679
CseI	GACGC	2 cut(s)	238, 271
CsiI	ACCWGGT	1 cut(s)	735
CviAII	CATG	2 cut(s)	155, 314
DpnI	GATC	1 cut(s)	674
DpnII	GATC	1 cut(s)	672
DraIII	CACNNNGTG	1 cut(s)	739
DrdI	GACNNNNNNGTC	1 cut(s)	248
DseDI	GACNNNNNNGTC	1 cut(s)	248
EciI	GGCGGA	1 cut(s)	94
Eco130I	CCWWGG	3 cut(s)	456, 548, 619
Eco24I	GRGCYC	2 cut(s)	123, 456
Eco31I	GGTCTC	1 cut(s)	126
Eco47I	GGWCC	3 cut(s)	142, 185, 497
Eco57I	CTGAAG	1 cut(s)	663
Eco72I	CACGTG	1 cut(s)	139
Eco88I	CYCGRG	1 cut(s)	655
Eco91I	GGTNACC	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	185
EcoO65I	GGTNACC	1 cut(s)	215
EcoRII	CCWGG	3 cut(s)	598, 675, 735
EcoT14I	CCWWGG	3 cut(s)	456, 548, 619
EcoT38I	GRGCYC	2 cut(s)	123, 456
ErhI	CCWWGG	3 cut(s)	456, 548, 619
Esp3I	CGTCTC	3 cut(s)	211, 724, 876
FaeI	CATG	2 cut(s)	158, 317
FaiI	YATR	5 cut(s)	156, 315, 386, 595, 650
FaqI	GGGAC	1 cut(s)	198
FatI	CATG	2 cut(s)	154, 313
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	6 cut(s)	63, 66, 69, 159, 162, 330
FriOI	GRGCYC	2 cut(s)	123, 456
Fsp4HI	GCNGC	6 cut(s)	63, 66, 69, 159, 162, 330
FspBI	CTAG	3 cut(s)	521, 615, 635
GluI	GCNGC	6 cut(s)	63, 66, 69, 159, 162, 330
HaeIII	GGCC	4 cut(s)	258, 653, 681, 801
HapII	CCGG	2 cut(s)	198, 500
HgaI	GACGC	2 cut(s)	238, 271
Hin1I	GRCGYC	1 cut(s)	282
Hin1II	CATG	2 cut(s)	158, 317
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	2 cut(s)	86, 517
HpaII	CCGG	2 cut(s)	198, 500
HphI	GGTGA	8 cut(s)	227, 266, 621, 659, 713, 725, 865, 877
Hpy166II	GTNNAC	4 cut(s)	142, 169, 629, 754
Hpy188I	TCNGA	5 cut(s)	131, 254, 451, 577, 876
Hpy188III	TCNNGA	4 cut(s)	314, 482, 521, 721
Hpy8I	GTNNAC	4 cut(s)	142, 169, 629, 754
Hpy99I	CGWCG	3 cut(s)	254, 287, 811
HpyAV	CCTTC	4 cut(s)	298, 638, 674, 740
HpyCH4III	ACNGT	3 cut(s)	278, 373, 559
HpyCH4IV	ACGT	5 cut(s)	138, 171, 388, 475, 806
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 98, 113, 255
HpySE526I	ACGT	5 cut(s)	138, 171, 388, 475, 806
Hsp92I	GRCGYC	1 cut(s)	282
Hsp92II	CATG	2 cut(s)	158, 317
KflI	GGGWCCC	1 cut(s)	185
KroI	GCCGGC	1 cut(s)	197
KroNI	GCCGGC	1 cut(s)	199
Kzo9I	GATC	1 cut(s)	672
LmnI	GCTCC	3 cut(s)	118, 132, 781
Lsp1109I	GCAGC	1 cut(s)	316
MabI	ACCWGGT	1 cut(s)	735
MaeI	CTAG	3 cut(s)	521, 615, 635
MaeII	ACGT	5 cut(s)	138, 171, 388, 475, 806
MaeIII	GTNAC	4 cut(s)	215, 263, 358, 637
MalI	GATC	1 cut(s)	674
MboI	GATC	1 cut(s)	672
MboII	GAAGA	3 cut(s)	329, 499, 536
MhlI	GDGCHC	3 cut(s)	123, 456, 481
MluCI	AATT	3 cut(s)	461, 527, 792
MlyI	GAGTC	1 cut(s)	80
MmeI	TCCRAC	1 cut(s)	232
MroNI	GCCGGC	1 cut(s)	197
MseI	TTAA	2 cut(s)	95, 582
MslI	CAYNNNNRTG	3 cut(s)	153, 318, 387
MspI	CCGG	2 cut(s)	198, 500
MspR9I	CCNGG	3 cut(s)	600, 677, 737
MvaI	CCWGG	3 cut(s)	600, 677, 737
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	4 cut(s)	68, 98, 113, 255
NaeI	GCCGGC	1 cut(s)	199
NdeII	GATC	1 cut(s)	672
NgoMIV	GCCGGC	1 cut(s)	197
NlaIII	CATG	2 cut(s)	158, 317
NlaIV	GGNNCC	3 cut(s)	120, 186, 187
NmuCI	GTSAC	3 cut(s)	215, 358, 637
OliI	CACNNNNGTG	1 cut(s)	387
PagI	TCATGA	1 cut(s)	313
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PdiI	GCCGGC	1 cut(s)	199
PfeI	GAWTC	1 cut(s)	517
PkrI	GCNGC	6 cut(s)	64, 67, 70, 160, 163, 331
PleI	GAGTC	1 cut(s)	80
PmaCI	CACGTG	1 cut(s)	139
PmlI	CACGTG	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	80
Ppu21I	YACGTR	3 cut(s)	139, 172, 389
PpuMI	RGGWCCY	1 cut(s)	185
Psp5II	RGGWCCY	1 cut(s)	185
Psp6I	CCWGG	3 cut(s)	598, 675, 735
PspCI	CACGTG	1 cut(s)	139
PspEI	GGTNACC	1 cut(s)	215
PspGI	CCWGG	3 cut(s)	598, 675, 735
PspN4I	GGNNCC	3 cut(s)	120, 186, 187
PspPI	GGNCC	4 cut(s)	142, 185, 497, 679
PspPPI	RGGWCCY	1 cut(s)	185
RseI	CAYNNNNRTG	3 cut(s)	153, 318, 387
SaqAI	TTAA	2 cut(s)	95, 582
SatI	GCNGC	6 cut(s)	63, 66, 69, 159, 162, 330
Sau3AI	GATC	1 cut(s)	672
Sau96I	GGNCC	4 cut(s)	142, 185, 497, 679
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	3 cut(s)	600, 677, 737
SduI	GDGCHC	3 cut(s)	123, 456, 481
SexAI	ACCWGGT	1 cut(s)	735
SfcI	CTRYAG	1 cut(s)	17
SinI	GGWCC	3 cut(s)	142, 185, 497
SmiMI	CAYNNNNRTG	3 cut(s)	153, 318, 387
SpeI	ACTAGT	1 cut(s)	634
Sse9I	AATT	3 cut(s)	461, 527, 792
SspI	AATATT	1 cut(s)	11
SspMI	CTAG	3 cut(s)	521, 615, 635
StyD4I	CCNGG	3 cut(s)	598, 675, 735
StyI	CCWWGG	3 cut(s)	456, 548, 619
TaaI	ACNGT	3 cut(s)	278, 373, 559
TaiI	ACGT	5 cut(s)	141, 174, 391, 478, 809
TaqI	TCGA	2 cut(s)	291, 722
TaqII	GACCGA	2 cut(s)	199, 234
TasI	AATT	3 cut(s)	461, 527, 792
TauI	GCSGC	5 cut(s)	65, 68, 71, 161, 164
TfiI	GAWTC	1 cut(s)	517
Tru1I	TTAA	2 cut(s)	95, 582
Tru9I	TTAA	2 cut(s)	95, 582
TseFI	GTSAC	3 cut(s)	215, 358, 637
TseI	GCWGC	1 cut(s)	329
Tsp45I	GTSAC	3 cut(s)	215, 358, 637
TspDTI	ATGAA	2 cut(s)	302, 330
VpaK11BI	GGWCC	3 cut(s)	142, 185, 497
XbaI	TCTAGA	1 cut(s)	520
XmiI	GTMKAC	1 cut(s)	168
XspI	CTAG	3 cut(s)	521, 615, 635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.