RLG00000013117

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015725
Physical Location & Seq
Forward (+)
26385283 .. 26385714
432 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013117

Sequence Viewer

Length: 432 bp
ATGAAATTATTACAAGGGCCACTAATTCCCCAAGTGCTGAGATGCTCAACAGCTTCTTGCCTCGGAACAAGTTTCAACTCTTACCGGTTGACTCCGGCGACGGCTTTGGCGGTCCGTACATTAGCTGTGATGACGTGGCGAGGTGGTAGGGTAGGATCTGGGGGCCGTAGGATGAGGTTTTCCGATAATCGTAATCCATTGATTGAAGATCAGAGACAGAATCACAGAGACGACAAAGAGGGTTTTCGATTTTCGAAGGAGAGTGATTTGGTGAAGAAAATTGAAGAGTCTAAAAGAGAAGAAGAAGGCGGGGATGCGTGTTCATGTCTGATATCGTTTCGTTCTCAGAGAAGAAGAAGAAGGAATACACTCGAAGGAGGGCGAGGATGGGATGGGTGTCTGGAAAAGCGAGGCTTCTGGAAATCTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

16.31

Weight (kDa)

10.27

Isoelectric Point (pI)

74.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 110, 309
AclWI GGATC 1 cut(s) 163
AfaI GTAC 1 cut(s) 118
AgeI ACCGGT 1 cut(s) 84
AgsI TTSAA 3 cut(s) 76, 206, 284
AjiI CACGTC 1 cut(s) 135
AluBI AGCT 2 cut(s) 53, 125
AluI AGCT 2 cut(s) 53, 125
Alw26I GTCTC 2 cut(s) 208, 222
AlwI GGATC 1 cut(s) 163
AoxI GGCC 2 cut(s) 17, 163
AsiGI ACCGGT 1 cut(s) 84
AspS9I GGNCC 3 cut(s) 17, 112, 163
AsuHPI GGTGA 1 cut(s) 283
AsuII TTCGAA 1 cut(s) 254
AvaII GGWCC 1 cut(s) 112
BarI GAAGNNNNNNTAC 2 cut(s) 349, 381
BccI CCATC 2 cut(s) 381, 386
BceAI ACGGC 2 cut(s) 117, 150
BcoDI GTCTC 2 cut(s) 208, 222
Bme18I GGWCC 1 cut(s) 112
BmgBI CACGTC 1 cut(s) 135
BmgT120I GGNCC 3 cut(s) 17, 112, 163
BmiI GGNNCC 1 cut(s) 164
BmsI GCATC 2 cut(s) 32, 304
Bpu14I TTCGAA 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 61
BsaWI WCCGGW 1 cut(s) 84
Bse118I RCCGGY 1 cut(s) 84
BseDI CCNNGG 1 cut(s) 61
BseGI GGATG 4 cut(s) 177, 319, 392, 397
BseMII CTCAG 2 cut(s) 29, 359
BshFI GGCC 2 cut(s) 19, 165
BshTI ACCGGT 1 cut(s) 84
BsiSI CCGG 2 cut(s) 85, 95
BsmAI GTCTC 2 cut(s) 208, 222
BsmBI CGTCTC 1 cut(s) 222
BsnI GGCC 2 cut(s) 19, 165
Bsp119I TTCGAA 1 cut(s) 254
Bsp143I GATC 2 cut(s) 155, 208
BspACI CCGC 2 cut(s) 110, 309
BspANI GGCC 2 cut(s) 19, 165
BspCNI CTCAG 2 cut(s) 30, 358
BspLI GGNNCC 1 cut(s) 164
BspPI GGATC 1 cut(s) 163
BspT104I TTCGAA 1 cut(s) 254
BsrFI RCCGGY 1 cut(s) 84
BssAI RCCGGY 1 cut(s) 84
BssECI CCNNGG 1 cut(s) 61
BssMI GATC 2 cut(s) 155, 208
Bst6I CTCTTC 1 cut(s) 279
BstBI TTCGAA 1 cut(s) 254
BstDEI CTNAG 2 cut(s) 38, 345
BstF5I GGATG 4 cut(s) 177, 319, 392, 397
BstKTI GATC 2 cut(s) 158, 211
BstMAI GTCTC 2 cut(s) 208, 222
BstMBI GATC 2 cut(s) 155, 208
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
BsuRI GGCC 2 cut(s) 19, 165
BtrI CACGTC 1 cut(s) 135
BtsCI GGATG 4 cut(s) 177, 319, 392, 397
Cfr10I RCCGGY 1 cut(s) 84
Cfr13I GGNCC 3 cut(s) 17, 112, 163
CpoI CGGWCCG 1 cut(s) 112
Csp6I GTAC 1 cut(s) 117
CspAI ACCGGT 1 cut(s) 84
CspI CGGWCCG 1 cut(s) 112
CviAII CATG 2 cut(s) 324, 429
CviJI RGCY 6 cut(s) 19, 53, 104, 125, 165, 414
CviKI_1 RGCY 6 cut(s) 19, 53, 104, 125, 165, 414
CviQI GTAC 1 cut(s) 117
DdeI CTNAG 2 cut(s) 38, 345
DpnI GATC 2 cut(s) 157, 210
DpnII GATC 2 cut(s) 155, 208
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Eco32I GATATC 1 cut(s) 333
Eco47I GGWCC 1 cut(s) 112
EcoRV GATATC 1 cut(s) 333
Esp3I CGTCTC 1 cut(s) 222
FaeI CATG 2 cut(s) 327, 432
FaiI YATR 2 cut(s) 325, 430
FalI AAGNNNNNCTT 2 cut(s) 398, 430
FatI CATG 2 cut(s) 323, 428
FauI CCCGC 1 cut(s) 302
FokI GGATG 4 cut(s) 184, 326, 399, 404
HaeIII GGCC 2 cut(s) 19, 165
HapII CCGG 2 cut(s) 85, 95
Hin1II CATG 2 cut(s) 327, 432
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HinfI GANTC 3 cut(s) 91, 220, 287
HpaII CCGG 2 cut(s) 85, 95
HphI GGTGA 1 cut(s) 283
Hpy166II GTNNAC 1 cut(s) 90
Hpy188I TCNGA 5 cut(s) 65, 184, 213, 330, 348
Hpy188III TCNNGA 2 cut(s) 401, 418
Hpy8I GTNNAC 1 cut(s) 90
Hpy99I CGWCG 1 cut(s) 103
HpyAV CCTTC 4 cut(s) 250, 299, 354, 368
HpyCH4IV ACGT 1 cut(s) 134
HpyF3I CTNAG 2 cut(s) 38, 345
HpySE526I ACGT 1 cut(s) 134
Hsp92II CATG 2 cut(s) 327, 432
Kzo9I GATC 2 cut(s) 155, 208
LpnPI CCDG 5 cut(s) 98, 108, 144, 386, 403
LweI GCATC 2 cut(s) 32, 304
MaeII ACGT 1 cut(s) 134
MalI GATC 2 cut(s) 157, 210
MboI GATC 2 cut(s) 155, 208
MboII GAAGA 8 cut(s) 218, 286, 296, 311, 314, 363, 366, 369
MflI RGATCY 1 cut(s) 155
MluCI AATT 3 cut(s) 5, 24, 279
MlyI GAGTC 2 cut(s) 85, 296
MnlI CCTC 7 cut(s) 71, 134, 168, 232, 371, 377, 404
MspI CCGG 2 cut(s) 85, 95
NdeII GATC 2 cut(s) 155, 208
NlaIII CATG 2 cut(s) 327, 432
NlaIV GGNNCC 1 cut(s) 164
NspV TTCGAA 1 cut(s) 254
PfeI GAWTC 1 cut(s) 220
PinAI ACCGGT 1 cut(s) 84
PleI GAGTC 2 cut(s) 85, 295
PpsI GAGTC 2 cut(s) 85, 295
PspN4I GGNNCC 1 cut(s) 164
PspPI GGNCC 3 cut(s) 17, 112, 163
PsuI RGATCY 1 cut(s) 155
RsaI GTAC 1 cut(s) 118
RsaNI GTAC 1 cut(s) 117
Rsr2I CGGWCCG 1 cut(s) 112
RsrII CGGWCCG 1 cut(s) 112
Sau3AI GATC 2 cut(s) 155, 208
Sau96I GGNCC 3 cut(s) 17, 112, 163
SchI GAGTC 2 cut(s) 85, 296
SetI ASST 5 cut(s) 55, 127, 137, 145, 179
SfaNI GCATC 2 cut(s) 32, 304
SfuI TTCGAA 1 cut(s) 254
SinI GGWCC 1 cut(s) 112
Sse9I AATT 3 cut(s) 5, 24, 279
SsiI CCGC 2 cut(s) 110, 309
TaiI ACGT 1 cut(s) 137
TaqI TCGA 3 cut(s) 247, 254, 372
TasI AATT 3 cut(s) 5, 24, 279
TfiI GAWTC 1 cut(s) 220
TspDTI ATGAA 2 cut(s) 17, 312
TspGWI ACGGA 1 cut(s) 104
VpaK11BI GGWCC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.