Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015725

Physical Location & Seq

Genomic Coordinates Reverse (-)

63911281 .. 63913487

Gene Structure 2207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41001

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGACCTATGTCAGGCCTTTGGTACGGCTCCCTTGCTCTGCAATGACCAGCAAGCTCAGTGTTGGTGCCAATTTCGGCATCAACGAGTCAACGGAGGTTCCGTTGAAATCCAAGTGTAAAGTGGTATGCCCTGGTAGTCCTGTGCCTAGCCTTGGTCGTTCACCTCTTGTGACTGAAGGTATGGCCTCGGGCTTCCTTCATCTGATCCTGGGCCTCCAAGCTACCTTGTTTGGTGAAACTGATAGTCTCGTCTCGGACTTCCTTCACCTGGTGTTGGGCTTCCACCACCTTGTGTTGGGCTTCCAAGCTCCTTTCTTGGGTGGAACTGATGGCCTCACGTCGGGCTTCCTCCACCTCGTGTTGGGCTTCCAAGCTCCTTGTTGGGTGAAGCTGATAGTCTCGTCTCGGACTTCCTTCACCTCGTGTTGGGCTTCCACCATCTCGTGTTGGGCTTCCACCACCTCGAGTTGGGCTTCCACCACCTCGAGTTGGGCTTCCAAGCTCCTTTCTTGGGTGGAACTGATGGCCTCACGTTGGGCTTCCTCCACCTCGTTCCTACGTGGACTCTTTGACATTTCAACGCGTACCACGTGGAATGGGTTGAAAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

203

Amino Acids

21.83

Weight (kDa)

9.05

Isoelectric Point (pI)

37.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015725)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g02830
rosa_chinensis	RchiOBHm_Chr4g0442241 RchiOBHm_Chr5g0056781 RchiOBHm_Chr5g0073021
rosa_laevigata	RLG00000003772 RLG00000011061 RLG00000013117 RLG00000015920 RLG00000017682 RLG00000036400
rosa_multiflora	Rmu_sc0005220.1_g000044 Rmu_sc0010369.1_g000010 Rmu_sc0019790.1_g000002
rosa_roxburghii	Rroxscaffold_5G00371710 Rroxscaffold_5G00371720 Rroxscaffold_7G00178540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	65
AccII	CGCG	1 cut(s)	583
AclWI	GGATC	1 cut(s)	199
AcuI	CTGAAG	1 cut(s)	195
AcvI	CACGTG	1 cut(s)	591
AdeI	CACNNNGTG	4 cut(s)	271, 292, 358, 423
AfaI	GTAC	2 cut(s)	24, 586
AflIII	ACRYGT	1 cut(s)	581
AgsI	TTSAA	3 cut(s)	106, 579, 604
AjiI	CACGTC	1 cut(s)	339
AjnI	CCWGG	3 cut(s)	130, 207, 267
AluBI	AGCT	6 cut(s)	55, 221, 308, 374, 391, 502
AluI	AGCT	6 cut(s)	55, 221, 308, 374, 391, 502
Alw26I	GTCTC	4 cut(s)	251, 256, 403, 408
AlwI	GGATC	1 cut(s)	199
Ama87I	CYCGRG	3 cut(s)	187, 463, 484
AoxI	GGCC	5 cut(s)	14, 183, 211, 331, 525
AspS9I	GGNCC	1 cut(s)	211
AsuHPI	GGTGA	5 cut(s)	153, 245, 257, 397, 409
AvaI	CYCGRG	3 cut(s)	187, 463, 484
BanI	GGYRCC	1 cut(s)	65
BauI	CACGAG	3 cut(s)	356, 421, 442
BbrPI	CACGTG	1 cut(s)	591
BccI	CCATC	3 cut(s)	323, 446, 517
BceAI	ACGGC	1 cut(s)	41
BciT130I	CCWGG	3 cut(s)	132, 209, 269
BcoDI	GTCTC	4 cut(s)	251, 256, 403, 408
BfaI	CTAG	1 cut(s)	147
Bme1390I	CCNGG	3 cut(s)	132, 209, 269
BmeT110I	CYCGRG	3 cut(s)	187, 463, 484
BmgBI	CACGTC	1 cut(s)	339
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	3 cut(s)	29, 67, 99
BmrFI	CCNGG	3 cut(s)	132, 209, 269
BmsI	GCATC	1 cut(s)	87
BoxI	GACNNNNGTC	1 cut(s)	8
BsaAI	YACGTR	2 cut(s)	560, 591
BsaJI	CCNNGG	4 cut(s)	130, 151, 186, 208
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bse3DI	GCAATG	1 cut(s)	48
BseBI	CCWGG	3 cut(s)	132, 209, 269
BseDI	CCNNGG	4 cut(s)	130, 151, 186, 208
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	70
Bsh1236I	CGCG	1 cut(s)	583
BshFI	GGCC	5 cut(s)	16, 185, 213, 333, 527
BshNI	GGYRCC	1 cut(s)	65
BsiHKCI	CYCGRG	3 cut(s)	187, 463, 484
BsmAI	GTCTC	4 cut(s)	251, 256, 403, 408
BsmBI	CGTCTC	2 cut(s)	256, 408
BsnI	GGCC	5 cut(s)	16, 185, 213, 333, 527
BsoBI	CYCGRG	3 cut(s)	187, 463, 484
Bsp143I	GATC	1 cut(s)	204
BspANI	GGCC	5 cut(s)	16, 185, 213, 333, 527
BspCNI	CTCAG	1 cut(s)	69
BspFNI	CGCG	1 cut(s)	583
BspLI	GGNNCC	3 cut(s)	29, 67, 99
BspPI	GGATC	1 cut(s)	199
BspT107I	GGYRCC	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	48
BssECI	CCNNGG	4 cut(s)	130, 151, 186, 208
BssMI	GATC	1 cut(s)	204
BssSI	CACGAG	3 cut(s)	356, 421, 442
BssT1I	CCWWGG	1 cut(s)	151
Bst2BI	CACGAG	3 cut(s)	356, 421, 442
Bst2UI	CCWGG	3 cut(s)	132, 209, 269
BstBAI	YACGTR	2 cut(s)	560, 591
BstC8I	GCNNGC	1 cut(s)	53
BstDEI	CTNAG	1 cut(s)	56
BstENI	CCTNNNNNAGG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	583
BstKTI	GATC	1 cut(s)	207
BstMAI	GTCTC	4 cut(s)	251, 256, 403, 408
BstMBI	GATC	1 cut(s)	204
BstNI	CCWGG	3 cut(s)	132, 209, 269
BstPAI	GACNNNNGTC	1 cut(s)	8
BstSCI	CCNGG	3 cut(s)	130, 207, 267
BstUI	CGCG	1 cut(s)	583
BsuRI	GGCC	5 cut(s)	16, 185, 213, 333, 527
BtrI	CACGTC	1 cut(s)	339
BtsIMutI	CAGTG	1 cut(s)	64
Cac8I	GCNNGC	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	211
CsiI	ACCWGGT	1 cut(s)	267
Csp6I	GTAC	2 cut(s)	23, 585
CviQI	GTAC	2 cut(s)	23, 585
DdeI	CTNAG	1 cut(s)	56
DpnI	GATC	1 cut(s)	206
DpnII	GATC	1 cut(s)	204
DraIII	CACNNNGTG	4 cut(s)	271, 292, 358, 423
Eco130I	CCWWGG	1 cut(s)	151
Eco147I	AGGCCT	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	195
Eco72I	CACGTG	1 cut(s)	591
Eco88I	CYCGRG	3 cut(s)	187, 463, 484
EcoNI	CCTNNNNNAGG	1 cut(s)	10
EcoRII	CCWGG	3 cut(s)	130, 207, 267
EcoT14I	CCWWGG	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	151
Esp3I	CGTCTC	2 cut(s)	256, 408
FaiI	YATR	3 cut(s)	9, 127, 182
FspBI	CTAG	1 cut(s)	147
HaeIII	GGCC	5 cut(s)	16, 185, 213, 333, 527
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HinfI	GANTC	2 cut(s)	86, 564
HphI	GGTGA	5 cut(s)	153, 245, 257, 397, 409
Hpy166II	GTNNAC	3 cut(s)	90, 161, 563
Hpy188I	TCNGA	3 cut(s)	204, 256, 408
Hpy8I	GTNNAC	3 cut(s)	90, 161, 563
Hpy99I	CGWCG	1 cut(s)	343
HpyAV	CCTTC	4 cut(s)	170, 206, 272, 424
HpyCH4IV	ACGT	4 cut(s)	338, 532, 559, 590
HpyCH4V	TGCA	1 cut(s)	41
HpyF3I	CTNAG	1 cut(s)	56
HpySE526I	ACGT	4 cut(s)	338, 532, 559, 590
Kzo9I	GATC	1 cut(s)	204
LmnI	GCTCC	4 cut(s)	33, 313, 379, 507
LpnPI	CCDG	8 cut(s)	61, 117, 144, 153, 194, 221, 254, 281
LweI	GCATC	1 cut(s)	87
MabI	ACCWGGT	1 cut(s)	267
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	4 cut(s)	338, 532, 559, 590
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	1 cut(s)	206
MboI	GATC	1 cut(s)	204
MluCI	AATT	1 cut(s)	70
MluI	ACGCGT	1 cut(s)	581
MlyI	GAGTC	2 cut(s)	95, 558
MseI	TTAA	1 cut(s)	610
MspR9I	CCNGG	3 cut(s)	132, 209, 269
MvaI	CCWGG	3 cut(s)	132, 209, 269
MvnI	CGCG	1 cut(s)	583
NdeII	GATC	1 cut(s)	204
NlaIV	GGNNCC	3 cut(s)	29, 67, 99
NmuCI	GTSAC	1 cut(s)	169
PaeR7I	CTCGAG	2 cut(s)	463, 484
PceI	AGGCCT	1 cut(s)	16
PcsI	WCGNNNNNNNCGW	3 cut(s)	81, 98, 587
PleI	GAGTC	2 cut(s)	94, 558
PmaCI	CACGTG	1 cut(s)	591
PmlI	CACGTG	1 cut(s)	591
PpsI	GAGTC	2 cut(s)	94, 558
Ppu21I	YACGTR	2 cut(s)	560, 591
PshAI	GACNNNNGTC	1 cut(s)	8
Psp6I	CCWGG	3 cut(s)	130, 207, 267
PspCI	CACGTG	1 cut(s)	591
PspGI	CCWGG	3 cut(s)	130, 207, 267
PspN4I	GGNNCC	3 cut(s)	29, 67, 99
PspPI	GGNCC	1 cut(s)	211
PspXI	VCTCGAGB	2 cut(s)	463, 484
RsaI	GTAC	2 cut(s)	24, 586
RsaNI	GTAC	2 cut(s)	23, 585
SaqAI	TTAA	1 cut(s)	610
Sau3AI	GATC	1 cut(s)	204
Sau96I	GGNCC	1 cut(s)	211
SchI	GAGTC	2 cut(s)	95, 558
ScrFI	CCNGG	3 cut(s)	132, 209, 269
SexAI	ACCWGGT	1 cut(s)	267
SfaNI	GCATC	1 cut(s)	87
Sfr274I	CTCGAG	2 cut(s)	463, 484
SlaI	CTCGAG	2 cut(s)	463, 484
SmlI	CTYRAG	2 cut(s)	463, 484
SmoI	CTYRAG	2 cut(s)	463, 484
Sse9I	AATT	1 cut(s)	70
SseBI	AGGCCT	1 cut(s)	16
SspMI	CTAG	1 cut(s)	147
StuI	AGGCCT	1 cut(s)	16
StyD4I	CCNGG	3 cut(s)	130, 207, 267
StyI	CCWWGG	1 cut(s)	151
TaiI	ACGT	4 cut(s)	341, 535, 562, 593
TaqI	TCGA	2 cut(s)	464, 485
TasI	AATT	1 cut(s)	70
Tru1I	TTAA	1 cut(s)	610
Tru9I	TTAA	1 cut(s)	610
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	1 cut(s)	169
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	1 cut(s)	188
TspGWI	ACGGA	2 cut(s)	90, 107
TspRI	CASTG	1 cut(s)	64
XagI	CCTNNNNNAGG	1 cut(s)	10
XcmI	CCANNNNNNNNNTGG	1 cut(s)	118
XhoI	CTCGAG	2 cut(s)	463, 484
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.