RLG00000017682

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0015725
Physical Location & Seq
Reverse (-)
19811770 .. 19814712
2943 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017682

Sequence Viewer

Length: 372 bp
ATGGAGATTCTTACTACAGTTGCTGGAGACAGTTCCCGAGTATGCACTTCTTGCCTCGGAACACATTTCAACTCGTTCCGATTGACGCCAGCGACGGCTTTGGCGGTCCGTACATCAGCTGTGATGACGCGGCGAGGTGGTAGGGCAGGATATGGGCGCCGTAGGATGAGGTTTTCCGATAATCATAATCCATTGATTGAAGATCGGAGACAGAATCACAGAGGCGACAAAGAGGGTTTTCGATTTTCGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAAGGAATACACTCGAAGGAGGGCGAGGATGGGATGGGTGTCTGGAAAAGCGAGGCTTTTGGAAATCTCCATGAGAATTTGAGAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

14.01

Weight (kDa)

10.53

Isoelectric Point (pI)

51.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 156
AccII CGCG 1 cut(s) 130
AciI CCGC 2 cut(s) 104, 130
AcsI RAATTY 1 cut(s) 358
AcyI GRCGYC 2 cut(s) 86, 157
AfaI GTAC 1 cut(s) 112
AgsI TTSAA 2 cut(s) 70, 200
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
Alw26I GTCTC 2 cut(s) 21, 202
AlwNI CAGNNNCTG 1 cut(s) 23
Ama87I CYCGRG 1 cut(s) 36
ApoI RAATTY 1 cut(s) 358
AspLEI GCGC 1 cut(s) 159
AspS9I GGNCC 1 cut(s) 106
AsuII TTCGAA 1 cut(s) 248
AvaI CYCGRG 1 cut(s) 36
AvaII GGWCC 1 cut(s) 106
BanI GGYRCC 1 cut(s) 156
BccI CCATC 2 cut(s) 305, 310
BceAI ACGGC 2 cut(s) 111, 144
BcoDI GTCTC 2 cut(s) 21, 202
BfmI CTRYAG 1 cut(s) 15
BfoI RGCGCY 1 cut(s) 160
BisI GCNGC 1 cut(s) 131
BlsI GCNGC 1 cut(s) 132
Bme18I GGWCC 1 cut(s) 106
BmeT110I CYCGRG 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 158
BpmI CTGGAG 1 cut(s) 45
Bpu14I TTCGAA 1 cut(s) 248
BsaHI GRCGYC 2 cut(s) 86, 157
BsaJI CCNNGG 1 cut(s) 55
BseDI CCNNGG 1 cut(s) 55
BseGI GGATG 3 cut(s) 171, 316, 321
Bsh1236I CGCG 1 cut(s) 130
BshNI GGYRCC 1 cut(s) 156
BsiHKCI CYCGRG 1 cut(s) 36
BsmAI GTCTC 2 cut(s) 21, 202
BsoBI CYCGRG 1 cut(s) 36
Bsp119I TTCGAA 1 cut(s) 248
Bsp143I GATC 1 cut(s) 202
BspACI CCGC 2 cut(s) 104, 130
BspFNI CGCG 1 cut(s) 130
BspLI GGNNCC 1 cut(s) 158
BspT104I TTCGAA 1 cut(s) 248
BspT107I GGYRCC 1 cut(s) 156
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 1 cut(s) 202
BssNI GRCGYC 2 cut(s) 86, 157
Bst4CI ACNGT 2 cut(s) 19, 32
BstACI GRCGYC 2 cut(s) 86, 157
BstAPI GCANNNNNTGC 1 cut(s) 51
BstBI TTCGAA 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 90
BstF5I GGATG 3 cut(s) 171, 316, 321
BstFNI CGCG 1 cut(s) 130
BstH2I RGCGCY 1 cut(s) 160
BstHHI GCGC 1 cut(s) 159
BstKTI GATC 1 cut(s) 205
BstMAI GTCTC 2 cut(s) 21, 202
BstMBI GATC 1 cut(s) 202
BstMWI GCNNNNNNNGC 1 cut(s) 51
BstSFI CTRYAG 1 cut(s) 15
BstUI CGCG 1 cut(s) 130
BtsCI GGATG 3 cut(s) 171, 316, 321
Cac8I GCNNGC 1 cut(s) 90
CaiI CAGNNNCTG 1 cut(s) 23
CfoI GCGC 1 cut(s) 159
Cfr13I GGNCC 1 cut(s) 106
CpoI CGGWCCG 1 cut(s) 106
CseI GACGC 2 cut(s) 94, 136
Csp6I GTAC 1 cut(s) 111
CspI CGGWCCG 1 cut(s) 106
CviAII CATG 1 cut(s) 353
CviJI RGCY 3 cut(s) 98, 119, 338
CviKI_1 RGCY 3 cut(s) 98, 119, 338
CviQI GTAC 1 cut(s) 111
DinI GGCGCC 1 cut(s) 158
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
Eco47I GGWCC 1 cut(s) 106
Eco88I CYCGRG 1 cut(s) 36
EgeI GGCGCC 1 cut(s) 158
EheI GGCGCC 1 cut(s) 158
FaeI CATG 1 cut(s) 356
FaiI YATR 4 cut(s) 43, 153, 186, 354
FalI AAGNNNNNCTT 2 cut(s) 322, 354
FatI CATG 1 cut(s) 352
Fnu4HI GCNGC 1 cut(s) 131
FokI GGATG 3 cut(s) 178, 323, 328
Fsp4HI GCNGC 1 cut(s) 131
GlaI GCGC 1 cut(s) 158
GluI GCNGC 1 cut(s) 131
GsuI CTGGAG 1 cut(s) 45
HaeII RGCGCY 1 cut(s) 160
HgaI GACGC 2 cut(s) 94, 136
HhaI GCGC 1 cut(s) 159
Hin1I GRCGYC 2 cut(s) 86, 157
Hin1II CATG 1 cut(s) 356
Hin6I GCGC 1 cut(s) 157
HinP1I GCGC 1 cut(s) 157
HinfI GANTC 2 cut(s) 7, 214
Hpy188I TCNGA 4 cut(s) 59, 80, 178, 207
Hpy188III TCNNGA 2 cut(s) 36, 325
Hpy99I CGWCG 1 cut(s) 97
HpyAV CCTTC 3 cut(s) 274, 278, 292
HpyCH4III ACNGT 2 cut(s) 19, 32
HpyCH4V TGCA 1 cut(s) 45
HpyF10VI GCNNNNNNNGC 1 cut(s) 51
Hsp92I GRCGYC 2 cut(s) 86, 157
Hsp92II CATG 1 cut(s) 356
HspAI GCGC 1 cut(s) 157
KasI GGCGCC 1 cut(s) 156
Kzo9I GATC 1 cut(s) 202
LpnPI CCDG 4 cut(s) 9, 102, 132, 310
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MluCI AATT 1 cut(s) 358
Mly113I GGCGCC 1 cut(s) 157
MnlI CCTC 8 cut(s) 65, 128, 162, 215, 226, 295, 301, 328
MspA1I CMGCKG 1 cut(s) 119
MvnI CGCG 1 cut(s) 130
MwoI GCNNNNNNNGC 1 cut(s) 51
NarI GGCGCC 1 cut(s) 157
NdeII GATC 1 cut(s) 202
NlaIII CATG 1 cut(s) 356
NlaIV GGNNCC 1 cut(s) 158
NspV TTCGAA 1 cut(s) 248
PfeI GAWTC 2 cut(s) 7, 214
PkrI GCNGC 1 cut(s) 132
PluTI GGCGCC 1 cut(s) 160
PspN4I GGNNCC 1 cut(s) 158
PspPI GGNCC 1 cut(s) 106
PstNI CAGNNNCTG 1 cut(s) 23
PvuII CAGCTG 1 cut(s) 119
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
Rsr2I CGGWCCG 1 cut(s) 106
RsrII CGGWCCG 1 cut(s) 106
SatI GCNGC 1 cut(s) 131
Sau3AI GATC 1 cut(s) 202
Sau96I GGNCC 1 cut(s) 106
SetI ASST 3 cut(s) 121, 139, 173
SfcI CTRYAG 1 cut(s) 15
SfoI GGCGCC 1 cut(s) 158
SfuI TTCGAA 1 cut(s) 248
SinI GGWCC 1 cut(s) 106
Sse9I AATT 1 cut(s) 358
SsiI CCGC 2 cut(s) 104, 130
SspDI GGCGCC 1 cut(s) 156
TaaI ACNGT 2 cut(s) 19, 32
TaqI TCGA 3 cut(s) 241, 248, 296
TasI AATT 1 cut(s) 358
TauI GCSGC 1 cut(s) 133
TfiI GAWTC 2 cut(s) 7, 214
TspGWI ACGGA 1 cut(s) 98
VpaK11BI GGWCC 1 cut(s) 106
XapI RAATTY 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.