Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010369.1

Orthogroup ID

OG0015725

Physical Location & Seq

Genomic Coordinates Forward (+)

32166 .. 33196

Gene Structure 1031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010369.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

atgaacccccgatcgaacgagaaaattaccaccgtggcaccactccgcctgccagaaatgaaaaaatcggtggacgccgtggagcggatcctagactatgacttcaagaacaagaggcttctagaggaagctctcatccacccctcctgccgaataagcgacgccgttttgttggtatgccctggtagtcctgtgcctagccttggtcgttcacctcttgtgactgaaggtatggcctcagacttctttcacctgatcctgggcctccaagctaccttgtttggtgaaactgatagtctcgtctcggacttgcttcacctaatgttgggcttcctccacctaatgttgggcttccaatctcttttcttgggtggaactgatggcttcacgtcgagaatctttaaatttaagcatgttttggagcctatagttactcttgaagagttgcagcaacaaactcatcctgtgacagagttgcagcaacaacctcgtcctgtgacagagttgcagcaacgacctcgtcctgtgacagagttgcagcaacaaccttatcctgttcaacaacctcatcctgtgacagagttgcatcaactttgccagaagcaggggaagaatgtcagtatcgagtacgggagaggtaagatgaagagtaatattgatgggaagtgtgttgccttgggttcggctgaacagaaaggaagtgctatagtcaatgctgctgagatggctctgaggaagttgatttatgatgcgctggttgaagttattgctgaaatcgatcagccattttctgttaaaaaagcaaaagattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM Ribonuclease_3 dsrm

Protein Analysis

270

Amino Acids

30.1

Weight (kDa)

6.46

Isoelectric Point (pI)

59.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015725)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g02830
rosa_chinensis	RchiOBHm_Chr4g0442241 RchiOBHm_Chr5g0056781 RchiOBHm_Chr5g0073021
rosa_laevigata	RLG00000003772 RLG00000011061 RLG00000013117 RLG00000015920 RLG00000017682 RLG00000036400
rosa_multiflora	Rmu_sc0005220.1_g000044 Rmu_sc0010369.1_g000010 Rmu_sc0019790.1_g000002
rosa_roxburghii	Rroxscaffold_5G00371710 Rroxscaffold_5G00371720 Rroxscaffold_7G00178540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	37
AccBSI	CCGCTC	1 cut(s)	85
AciI	CCGC	2 cut(s)	46, 85
AclWI	GGATC	3 cut(s)	82, 95, 250
AcsI	RAATTY	1 cut(s)	404
AcuI	CTGAAG	1 cut(s)	246
AcyI	GRCGYC	2 cut(s)	75, 162
AfaI	GTAC	1 cut(s)	629
AfiI	CCNNNNNNNGG	6 cut(s)	84, 203, 259, 325, 346, 604
AgsI	TTSAA	4 cut(s)	106, 440, 560, 761
AjiI	CACGTC	1 cut(s)	390
AjnI	CCWGG	2 cut(s)	181, 258
AluBI	AGCT	2 cut(s)	131, 272
AluI	AGCT	2 cut(s)	131, 272
Alw26I	GTCTC	2 cut(s)	302, 307
AlwI	GGATC	3 cut(s)	82, 95, 250
AoxI	GGCC	2 cut(s)	234, 262
ApeKI	GCWGC	5 cut(s)	448, 478, 508, 538, 716
ApoI	RAATTY	1 cut(s)	404
AspLEI	GCGC	1 cut(s)	754
AspS9I	GGNCC	1 cut(s)	262
AsuHPI	GGTGA	4 cut(s)	204, 242, 296, 308
BamHI	GGATCC	1 cut(s)	87
BanI	GGYRCC	1 cut(s)	37
BbvI	GCAGC	5 cut(s)	460, 490, 520, 550, 703
BccI	CCATC	3 cut(s)	374, 653, 718
BceAI	ACGGC	2 cut(s)	62, 149
BcgI	CGANNNNNNTGC	4 cut(s)	470, 500, 504, 534
BciT130I	CCWGG	2 cut(s)	183, 260
BcoDI	GTCTC	2 cut(s)	302, 307
BfaI	CTAG	3 cut(s)	92, 122, 198
BfmI	CTRYAG	2 cut(s)	426, 705
BisI	GCNGC	5 cut(s)	449, 479, 509, 539, 717
BlsI	GCNGC	5 cut(s)	450, 480, 510, 540, 718
Bme1390I	CCNGG	2 cut(s)	183, 260
BmgBI	CACGTC	1 cut(s)	390
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	3 cut(s)	39, 89, 423
BmrFI	CCNGG	2 cut(s)	183, 260
BmsI	GCATC	2 cut(s)	595, 739
Bsa29I	ATCGAT	1 cut(s)	777
BsaHI	GRCGYC	2 cut(s)	75, 162
BsaJI	CCNNGG	6 cut(s)	33, 78, 181, 202, 259, 675
Bsc4I	CCNNNNNNNGG	6 cut(s)	84, 203, 259, 325, 346, 604
BseBI	CCWGG	2 cut(s)	183, 260
BseCI	ATCGAT	1 cut(s)	777
BseDI	CCNNGG	6 cut(s)	33, 78, 181, 202, 259, 675
BseGI	GGATG	3 cut(s)	135, 460, 568
BseLI	CCNNNNNNNGG	6 cut(s)	84, 203, 259, 325, 346, 604
BseMII	CTCAG	3 cut(s)	252, 711, 722
BseXI	GCAGC	5 cut(s)	460, 490, 520, 550, 703
Bsh1285I	CGRYCG	1 cut(s)	14
BshFI	GGCC	2 cut(s)	236, 264
BshNI	GGYRCC	1 cut(s)	37
BshVI	ATCGAT	1 cut(s)	777
BsiEI	CGRYCG	1 cut(s)	14
BslI	CCNNNNNNNGG	6 cut(s)	84, 203, 259, 325, 346, 604
BsmAI	GTCTC	2 cut(s)	302, 307
BsmBI	CGTCTC	1 cut(s)	307
BsnI	GGCC	2 cut(s)	236, 264
Bsp143I	GATC	4 cut(s)	11, 87, 255, 778
BspACI	CCGC	2 cut(s)	46, 85
BspANI	GGCC	2 cut(s)	236, 264
BspCNI	CTCAG	3 cut(s)	251, 712, 723
BspDI	ATCGAT	1 cut(s)	777
BspLI	GGNNCC	3 cut(s)	39, 89, 423
BspPI	GGATC	3 cut(s)	82, 95, 250
BspT107I	GGYRCC	1 cut(s)	37
BsrBI	CCGCTC	1 cut(s)	85
BssECI	CCNNGG	6 cut(s)	33, 78, 181, 202, 259, 675
BssMI	GATC	4 cut(s)	11, 87, 255, 778
BssNI	GRCGYC	2 cut(s)	75, 162
BssT1I	CCWWGG	2 cut(s)	202, 675
Bst2UI	CCWGG	2 cut(s)	183, 260
Bst4CI	ACNGT	1 cut(s)	34
Bst6I	CTCTTC	2 cut(s)	435, 641
BstACI	GRCGYC	2 cut(s)	75, 162
BstC8I	GCNNGC	1 cut(s)	50
BstDEI	CTNAG	3 cut(s)	238, 720, 731
BstDSI	CCRYGG	2 cut(s)	33, 78
BstF5I	GGATG	3 cut(s)	135, 460, 568
BstHHI	GCGC	1 cut(s)	754
BstKTI	GATC	4 cut(s)	14, 90, 258, 781
BstMAI	GTCTC	2 cut(s)	302, 307
BstMBI	GATC	4 cut(s)	11, 87, 255, 778
BstMCI	CGRYCG	1 cut(s)	14
BstMWI	GCNNNNNNNGC	2 cut(s)	156, 725
BstNI	CCWGG	2 cut(s)	183, 260
BstNSI	RCATGY	1 cut(s)	416
BstSCI	CCNGG	2 cut(s)	181, 258
BstSFI	CTRYAG	2 cut(s)	426, 705
BstV1I	GCAGC	5 cut(s)	460, 490, 520, 550, 703
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
Bsu15I	ATCGAT	1 cut(s)	777
BsuRI	GGCC	2 cut(s)	236, 264
BsuTUI	ATCGAT	1 cut(s)	777
BtgI	CCRYGG	2 cut(s)	33, 78
BtrI	CACGTC	1 cut(s)	390
BtsCI	GGATG	3 cut(s)	135, 460, 568
Cac8I	GCNNGC	1 cut(s)	50
CfoI	GCGC	1 cut(s)	754
Cfr13I	GGNCC	1 cut(s)	262
ClaI	ATCGAT	1 cut(s)	777
CseI	GACGC	2 cut(s)	83, 170
Csp6I	GTAC	1 cut(s)	628
CviAII	CATG	1 cut(s)	413
CviQI	GTAC	1 cut(s)	628
DdeI	CTNAG	3 cut(s)	238, 720, 731
DpnI	GATC	4 cut(s)	13, 89, 257, 780
DpnII	GATC	4 cut(s)	11, 87, 255, 778
DraI	TTTAAA	1 cut(s)	403
Eam1104I	CTCTTC	2 cut(s)	435, 641
EarI	CTCTTC	2 cut(s)	435, 641
EciI	GGCGGA	1 cut(s)	35
Eco130I	CCWWGG	2 cut(s)	202, 675
Eco57I	CTGAAG	1 cut(s)	246
EcoRII	CCWGG	2 cut(s)	181, 258
EcoT14I	CCWWGG	2 cut(s)	202, 675
ErhI	CCWWGG	2 cut(s)	202, 675
Esp3I	CGTCTC	1 cut(s)	307
FaeI	CATG	1 cut(s)	416
FaiI	YATR	7 cut(s)	99, 178, 233, 414, 428, 707, 747
FatI	CATG	1 cut(s)	412
Fnu4HI	GCNGC	5 cut(s)	449, 479, 509, 539, 717
FokI	GGATG	3 cut(s)	122, 447, 555
Fsp4HI	GCNGC	5 cut(s)	449, 479, 509, 539, 717
FspBI	CTAG	3 cut(s)	92, 122, 198
GlaI	GCGC	1 cut(s)	753
GluI	GCNGC	5 cut(s)	449, 479, 509, 539, 717
HaeIII	GGCC	2 cut(s)	236, 264
HgaI	GACGC	2 cut(s)	83, 170
HhaI	GCGC	1 cut(s)	754
Hin1I	GRCGYC	2 cut(s)	75, 162
Hin1II	CATG	1 cut(s)	416
Hin6I	GCGC	1 cut(s)	752
HinP1I	GCGC	1 cut(s)	752
HinfI	GANTC	1 cut(s)	396
HphI	GGTGA	4 cut(s)	204, 242, 296, 308
Hpy166II	GTNNAC	2 cut(s)	73, 212
Hpy188I	TCNGA	3 cut(s)	241, 307, 732
Hpy188III	TCNNGA	4 cut(s)	106, 122, 393, 437
Hpy8I	GTNNAC	2 cut(s)	73, 212
Hpy99I	CGWCG	2 cut(s)	164, 394
HpyAV	CCTTC	1 cut(s)	221
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4IV	ACGT	1 cut(s)	389
HpyCH4V	TGCA	5 cut(s)	448, 478, 508, 538, 586
HpyF10VI	GCNNNNNNNGC	2 cut(s)	156, 725
HpyF3I	CTNAG	3 cut(s)	238, 720, 731
HpySE526I	ACGT	1 cut(s)	389
Hsp92I	GRCGYC	2 cut(s)	75, 162
Hsp92II	CATG	1 cut(s)	416
HspAI	GCGC	1 cut(s)	752
Kzo9I	GATC	4 cut(s)	11, 87, 255, 778
LmnI	GCTCC	2 cut(s)	82, 421
Lsp1109I	GCAGC	5 cut(s)	460, 490, 520, 550, 703
LweI	GCATC	2 cut(s)	595, 739
MaeI	CTAG	3 cut(s)	92, 122, 198
MaeII	ACGT	1 cut(s)	389
MaeIII	GTNAC	6 cut(s)	220, 430, 466, 496, 526, 574
MalI	GATC	4 cut(s)	13, 89, 257, 780
MbiI	CCGCTC	1 cut(s)	85
MboI	GATC	4 cut(s)	11, 87, 255, 778
MboII	GAAGA	3 cut(s)	452, 622, 658
MflI	RGATCY	1 cut(s)	87
MluCI	AATT	2 cut(s)	24, 404
MseI	TTAA	3 cut(s)	402, 408, 795
MspR9I	CCNGG	2 cut(s)	183, 260
MvaI	CCWGG	2 cut(s)	183, 260
MwoI	GCNNNNNNNGC	2 cut(s)	156, 725
NdeII	GATC	4 cut(s)	11, 87, 255, 778
NlaIII	CATG	1 cut(s)	416
NlaIV	GGNNCC	3 cut(s)	39, 89, 423
NmuCI	GTSAC	5 cut(s)	220, 466, 496, 526, 574
NspI	RCATGY	1 cut(s)	416
PfeI	GAWTC	1 cut(s)	396
PflFI	GACNNNGTC	1 cut(s)	519
PkrI	GCNGC	5 cut(s)	450, 480, 510, 540, 718
Ple19I	CGATCG	1 cut(s)	14
Psp6I	CCWGG	2 cut(s)	181, 258
PspGI	CCWGG	2 cut(s)	181, 258
PspN4I	GGNNCC	3 cut(s)	39, 89, 423
PspPI	GGNCC	1 cut(s)	262
PsuI	RGATCY	1 cut(s)	87
PsyI	GACNNNGTC	1 cut(s)	519
PvuI	CGATCG	1 cut(s)	14
RsaI	GTAC	1 cut(s)	629
RsaNI	GTAC	1 cut(s)	628
SaqAI	TTAA	3 cut(s)	402, 408, 795
SatI	GCNGC	5 cut(s)	449, 479, 509, 539, 717
Sau3AI	GATC	4 cut(s)	11, 87, 255, 778
Sau96I	GGNCC	1 cut(s)	262
ScrFI	CCNGG	2 cut(s)	183, 260
SfaNI	GCATC	2 cut(s)	595, 739
SfcI	CTRYAG	2 cut(s)	426, 705
Sse9I	AATT	2 cut(s)	24, 404
SsiI	CCGC	2 cut(s)	46, 85
SspI	AATATT	1 cut(s)	655
SspMI	CTAG	3 cut(s)	92, 122, 198
StyD4I	CCNGG	2 cut(s)	181, 258
StyI	CCWWGG	2 cut(s)	202, 675
TaaI	ACNGT	1 cut(s)	34
TaiI	ACGT	1 cut(s)	392
TaqI	TCGA	4 cut(s)	14, 392, 624, 777
TasI	AATT	2 cut(s)	24, 404
TfiI	GAWTC	1 cut(s)	396
Tru1I	TTAA	3 cut(s)	402, 408, 795
Tru9I	TTAA	3 cut(s)	402, 408, 795
TseFI	GTSAC	5 cut(s)	220, 466, 496, 526, 574
TseI	GCWGC	5 cut(s)	448, 478, 508, 538, 716
Tsp45I	GTSAC	5 cut(s)	220, 466, 496, 526, 574
TspDTI	ATGAA	3 cut(s)	17, 74, 659
Tth111I	GACNNNGTC	1 cut(s)	519
XapI	RAATTY	1 cut(s)	404
XbaI	TCTAGA	1 cut(s)	121
XceI	RCATGY	1 cut(s)	416
XspI	CTAG	3 cut(s)	92, 122, 198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.