Rroxscaffold_7G00178540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0015725
Physical Location & Seq
Reverse (-)
18211235 .. 18211666
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00178540.1

Sequence Viewer

Length: 432 bp
ATGCCGAAACTACCCTCCACCACCGGCACCACCCCACCCACCCACCCACCCAACCCAACACCGGTCCCACCACCTCAACAACCACACCCACCACTCGCCGCCGTCGCCTCAAACCCCACGGACTCCGCTTCAACCGCCTCCGCCTCCTCCGCGGAGCCCAAGCTCCGAGACCACGTGGACCTCCACCGCATGCCGCCGCCGTCGTCCACGTGGGATTTCGGGATCCTTTTGTGCGGCTTCATCTCGGTCGGTGGCCGAGGAGGAATGGGAGGCTACGACCACCGCGTCGGAGGCGTGCTTACGGCCGTCACCGTGGCGGCGAGCACCGTGGCGCCGCCTTCGGTTGTTGGTGGGTTTTCGAAGGACGGTGAGGAAGAGGAAGAGGAAGCGAGAACAAGAGGAAGAGGAAGAACCGAAAGGCGGTGGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

14.91

Weight (kDa)

6.5

Isoelectric Point (pI)

64.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 284
AccB1I GGYRCC 2 cut(s) 26, 331
AccII CGCG 2 cut(s) 152, 285
AclWI GGATC 2 cut(s) 217, 230
AcoI YGGCCR 2 cut(s) 253, 303
AcvI CACGTG 2 cut(s) 175, 210
AcyI GRCGYC 1 cut(s) 332
AfiI CCNNNNNNNGG 2 cut(s) 61, 420
AgeI ACCGGT 1 cut(s) 61
AgsI TTSAA 1 cut(s) 132
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
Alw21I GWGCWC 1 cut(s) 326
Alw26I GTCTC 1 cut(s) 162
AlwI GGATC 2 cut(s) 217, 230
AoxI GGCC 2 cut(s) 253, 303
AsiGI ACCGGT 1 cut(s) 61
AspLEI GCGC 1 cut(s) 334
AspS9I GGNCC 2 cut(s) 64, 178
AsuHPI GGTGA 2 cut(s) 301, 380
AsuII TTCGAA 1 cut(s) 359
AvaII GGWCC 2 cut(s) 64, 178
BamHI GGATCC 1 cut(s) 222
BanI GGYRCC 2 cut(s) 26, 331
BanII GRGCYC 1 cut(s) 159
BbrPI CACGTG 2 cut(s) 175, 210
Bbv12I GWGCWC 1 cut(s) 326
BceAI ACGGC 4 cut(s) 86, 184, 290, 318
BcoDI GTCTC 1 cut(s) 162
BfoI RGCGCY 1 cut(s) 335
BisI GCNGC 6 cut(s) 99, 194, 197, 235, 318, 335
BlsI GCNGC 6 cut(s) 100, 195, 198, 236, 319, 336
Bme18I GGWCC 2 cut(s) 64, 178
BmgT120I GGNCC 2 cut(s) 64, 178
BmiI GGNNCC 5 cut(s) 28, 66, 156, 224, 333
Bpu14I TTCGAA 1 cut(s) 359
BsaAI YACGTR 2 cut(s) 175, 210
BsaHI GRCGYC 1 cut(s) 332
BsaI GGTCTC 1 cut(s) 162
BsaJI CCNNGG 5 cut(s) 117, 150, 256, 312, 327
BsaWI WCCGGW 1 cut(s) 61
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 420
Bse118I RCCGGY 2 cut(s) 23, 61
BseDI CCNNGG 5 cut(s) 117, 150, 256, 312, 327
BseLI CCNNNNNNNGG 2 cut(s) 61, 420
BseRI GAGGAG 2 cut(s) 136, 273
BseX3I CGGCCG 1 cut(s) 303
Bsh1236I CGCG 2 cut(s) 152, 285
Bsh1285I CGRYCG 2 cut(s) 249, 306
BshFI GGCC 2 cut(s) 255, 305
BshNI GGYRCC 2 cut(s) 26, 331
BshTI ACCGGT 1 cut(s) 61
BsiEI CGRYCG 2 cut(s) 249, 306
BsiHKAI GWGCWC 1 cut(s) 326
BsiSI CCGG 2 cut(s) 24, 62
BslFI GGGAC 1 cut(s) 50
BslI CCNNNNNNNGG 2 cut(s) 61, 420
BsmAI GTCTC 1 cut(s) 162
BsmFI GGGAC 1 cut(s) 50
BsnI GGCC 2 cut(s) 255, 305
Bso31I GGTCTC 1 cut(s) 162
Bsp119I TTCGAA 1 cut(s) 359
Bsp1286I GDGCHC 2 cut(s) 159, 326
Bsp143I GATC 1 cut(s) 222
BspANI GGCC 2 cut(s) 255, 305
BspFNI CGCG 2 cut(s) 152, 285
BspLI GGNNCC 5 cut(s) 28, 66, 156, 224, 333
BspPI GGATC 2 cut(s) 217, 230
BspT104I TTCGAA 1 cut(s) 359
BspT107I GGYRCC 2 cut(s) 26, 331
BspTNI GGTCTC 1 cut(s) 162
BsrFI RCCGGY 2 cut(s) 23, 61
BssAI RCCGGY 2 cut(s) 23, 61
BssECI CCNNGG 5 cut(s) 117, 150, 256, 312, 327
BssMI GATC 1 cut(s) 222
BssNI GRCGYC 1 cut(s) 332
Bst4CI ACNGT 3 cut(s) 313, 328, 368
Bst6I CTCTTC 3 cut(s) 369, 375, 397
BstACI GRCGYC 1 cut(s) 332
BstBAI YACGTR 2 cut(s) 175, 210
BstBI TTCGAA 1 cut(s) 359
BstC8I GCNNGC 3 cut(s) 191, 296, 322
BstDSI CCRYGG 4 cut(s) 117, 150, 312, 327
BstFNI CGCG 2 cut(s) 152, 285
BstH2I RGCGCY 1 cut(s) 335
BstHHI GCGC 1 cut(s) 334
BstKTI GATC 1 cut(s) 225
BstMAI GTCTC 1 cut(s) 162
BstMBI GATC 1 cut(s) 222
BstMCI CGRYCG 2 cut(s) 249, 306
BstMWI GCNNNNNNNGC 4 cut(s) 104, 134, 149, 291
BstNSI RCATGY 1 cut(s) 193
BstUI CGCG 2 cut(s) 152, 285
BstX2I RGATCY 1 cut(s) 222
BstYI RGATCY 1 cut(s) 222
BstZI CGGCCG 1 cut(s) 303
BsuRI GGCC 2 cut(s) 255, 305
BtgI CCRYGG 4 cut(s) 117, 150, 312, 327
Cac8I GCNNGC 3 cut(s) 191, 296, 322
CfoI GCGC 1 cut(s) 334
Cfr10I RCCGGY 2 cut(s) 23, 61
Cfr13I GGNCC 2 cut(s) 64, 178
Cfr42I CCGCGG 1 cut(s) 153
CseI GACGC 1 cut(s) 274
CspAI ACCGGT 1 cut(s) 61
CviAII CATG 1 cut(s) 190
CviJI RGCY 6 cut(s) 157, 163, 237, 255, 273, 305
CviKI_1 RGCY 6 cut(s) 157, 163, 237, 255, 273, 305
DinI GGCGCC 1 cut(s) 333
DpnI GATC 1 cut(s) 224
DpnII GATC 1 cut(s) 222
DrdI GACNNNNNNGTC 1 cut(s) 284
DseDI GACNNNNNNGTC 1 cut(s) 284
EaeI YGGCCR 2 cut(s) 253, 303
EagI CGGCCG 1 cut(s) 303
Eam1104I CTCTTC 3 cut(s) 369, 375, 397
EarI CTCTTC 3 cut(s) 369, 375, 397
EciI GGCGGA 1 cut(s) 130
EclXI CGGCCG 1 cut(s) 303
Eco24I GRGCYC 1 cut(s) 159
Eco31I GGTCTC 1 cut(s) 162
Eco47I GGWCC 2 cut(s) 64, 178
Eco52I CGGCCG 1 cut(s) 303
Eco72I CACGTG 2 cut(s) 175, 210
EcoT38I GRGCYC 1 cut(s) 159
EgeI GGCGCC 1 cut(s) 333
EheI GGCGCC 1 cut(s) 333
FaeI CATG 1 cut(s) 193
FaiI YATR 2 cut(s) 191, 430
FaqI GGGAC 1 cut(s) 50
FatI CATG 1 cut(s) 189
Fnu4HI GCNGC 6 cut(s) 99, 194, 197, 235, 318, 335
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 6 cut(s) 99, 194, 197, 235, 318, 335
GlaI GCGC 1 cut(s) 333
GluI GCNGC 6 cut(s) 99, 194, 197, 235, 318, 335
HaeII RGCGCY 1 cut(s) 335
HaeIII GGCC 2 cut(s) 255, 305
HapII CCGG 2 cut(s) 24, 62
HgaI GACGC 1 cut(s) 274
HhaI GCGC 1 cut(s) 334
Hin1I GRCGYC 1 cut(s) 332
Hin1II CATG 1 cut(s) 193
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HinfI GANTC 1 cut(s) 122
HpaII CCGG 2 cut(s) 24, 62
HphI GGTGA 2 cut(s) 301, 380
Hpy166II GTNNAC 2 cut(s) 178, 207
Hpy188I TCNGA 2 cut(s) 167, 290
Hpy188III TCNNGA 1 cut(s) 220
Hpy8I GTNNAC 2 cut(s) 178, 207
Hpy99I CGWCG 3 cut(s) 107, 205, 290
HpyAV CCTTC 2 cut(s) 348, 355
HpyCH4III ACNGT 3 cut(s) 313, 328, 368
HpyCH4IV ACGT 2 cut(s) 174, 209
HpyF10VI GCNNNNNNNGC 4 cut(s) 104, 134, 149, 291
HpySE526I ACGT 2 cut(s) 174, 209
Hsp92I GRCGYC 1 cut(s) 332
Hsp92II CATG 1 cut(s) 193
HspAI GCGC 1 cut(s) 332
KasI GGCGCC 1 cut(s) 331
KspI CCGCGG 1 cut(s) 153
Kzo9I GATC 1 cut(s) 222
LmnI GCTCC 2 cut(s) 154, 168
LpnPI CCDG 2 cut(s) 37, 75
MaeII ACGT 2 cut(s) 174, 209
MaeIII GTNAC 1 cut(s) 307
MalI GATC 1 cut(s) 224
MboI GATC 1 cut(s) 222
MboII GAAGA 4 cut(s) 386, 392, 414, 420
MflI RGATCY 1 cut(s) 222
MhlI GDGCHC 2 cut(s) 159, 326
Mly113I GGCGCC 1 cut(s) 332
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 1 cut(s) 268
MspA1I CMGCKG 1 cut(s) 152
MspI CCGG 2 cut(s) 24, 62
MvnI CGCG 2 cut(s) 152, 285
MwoI GCNNNNNNNGC 4 cut(s) 104, 134, 149, 291
NarI GGCGCC 1 cut(s) 332
NdeII GATC 1 cut(s) 222
NlaIII CATG 1 cut(s) 193
NlaIV GGNNCC 5 cut(s) 28, 66, 156, 224, 333
NmeAIII GCCGAG 1 cut(s) 281
NmuCI GTSAC 1 cut(s) 307
NspI RCATGY 1 cut(s) 193
NspV TTCGAA 1 cut(s) 359
PaeI GCATGC 1 cut(s) 193
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PinAI ACCGGT 1 cut(s) 61
PkrI GCNGC 6 cut(s) 100, 195, 198, 236, 319, 336
PleI GAGTC 1 cut(s) 116
PluTI GGCGCC 1 cut(s) 335
PmaCI CACGTG 2 cut(s) 175, 210
PmlI CACGTG 2 cut(s) 175, 210
PpsI GAGTC 1 cut(s) 116
Ppu21I YACGTR 2 cut(s) 175, 210
PspCI CACGTG 2 cut(s) 175, 210
PspN4I GGNNCC 5 cut(s) 28, 66, 156, 224, 333
PspPI GGNCC 2 cut(s) 64, 178
PsuI RGATCY 1 cut(s) 222
SacII CCGCGG 1 cut(s) 153
SatI GCNGC 6 cut(s) 99, 194, 197, 235, 318, 335
Sau3AI GATC 1 cut(s) 222
Sau96I GGNCC 2 cut(s) 64, 178
SchI GAGTC 1 cut(s) 116
SduI GDGCHC 2 cut(s) 159, 326
SetI ASST 5 cut(s) 76, 165, 177, 183, 212
SfoI GGCGCC 1 cut(s) 333
Sfr303I CCGCGG 1 cut(s) 153
SfuI TTCGAA 1 cut(s) 359
SgrBI CCGCGG 1 cut(s) 153
SinI GGWCC 2 cut(s) 64, 178
SphI GCATGC 1 cut(s) 193
SspDI GGCGCC 1 cut(s) 331
TaaI ACNGT 3 cut(s) 313, 328, 368
TaiI ACGT 2 cut(s) 177, 212
TaqI TCGA 1 cut(s) 359
TaqII GACCGA 1 cut(s) 235
TauI GCSGC 6 cut(s) 101, 196, 199, 237, 320, 337
TseFI GTSAC 1 cut(s) 307
Tsp45I GTSAC 1 cut(s) 307
TspDTI ATGAA 1 cut(s) 229
TspGWI ACGGA 1 cut(s) 134
VpaK11BI GGWCC 2 cut(s) 64, 178
XceI RCATGY 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.