RchiOBHm_Chr5g0056781

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0015725
Physical Location & Seq
Reverse (-)
60573715 .. 60574977
1263 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33365

Sequence Viewer

Length: 306 bp
ATGGCCTCGGGCTTCCTTCACCTGATCCTGGGCCACCAAGCTACCTTGTTTGGTGAAACTTATAGTCTCGTCTCGGACTTCCTTCACCTGGTGTTGGGCTTCCTCCACCTAATGTTGGGCTTCCAAGCTCCTTTCTTGGGTGGAACTGATGGCTTCATGCCGGGCTTTCTCCACTTTGTGTTGGGCTTCCAAGCTCCTTGTTGGGATTATCTTTTCTTTCTCGATGAAGGGTTTAAGTGCGTTGAAAGGTCAGGGTCCTACGTGGACTCTTTGACATTTCAACGCGTACCACGTGGAATGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.27

Weight (kDa)

5.55

Isoelectric Point (pI)

26.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 285
AclWI GGATC 1 cut(s) 19
AcvI CACGTG 1 cut(s) 293
AdeI CACNNNGTG 2 cut(s) 91, 178
AfaI GTAC 1 cut(s) 288
AfiI CCNNNNNNNGG 5 cut(s) 28, 88, 94, 115, 137
AflIII ACRYGT 1 cut(s) 283
AgsI TTSAA 2 cut(s) 245, 281
AjnI CCWGG 2 cut(s) 27, 87
AluBI AGCT 3 cut(s) 41, 128, 194
AluI AGCT 3 cut(s) 41, 128, 194
Alw26I GTCTC 2 cut(s) 71, 76
AlwI GGATC 1 cut(s) 19
Ama87I CYCGRG 1 cut(s) 7
AoxI GGCC 2 cut(s) 3, 31
AspS9I GGNCC 2 cut(s) 31, 255
AsuC2I CCSGG 1 cut(s) 162
AsuHPI GGTGA 3 cut(s) 11, 65, 77
AvaI CYCGRG 1 cut(s) 7
AvaII GGWCC 1 cut(s) 255
BbrPI CACGTG 1 cut(s) 293
BccI CCATC 1 cut(s) 143
BciT130I CCWGG 2 cut(s) 29, 89
BcnI CCSGG 1 cut(s) 162
BcoDI GTCTC 2 cut(s) 71, 76
Bme1390I CCNGG 3 cut(s) 29, 89, 162
Bme18I GGWCC 1 cut(s) 255
BmeT110I CYCGRG 1 cut(s) 7
BmgT120I GGNCC 2 cut(s) 31, 255
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 3 cut(s) 29, 89, 162
BpuMI CCSGG 1 cut(s) 162
BsaAI YACGTR 2 cut(s) 262, 293
BsaJI CCNNGG 2 cut(s) 6, 28
Bsc4I CCNNNNNNNGG 5 cut(s) 28, 88, 94, 115, 137
BseBI CCWGG 2 cut(s) 29, 89
BseDI CCNNGG 2 cut(s) 6, 28
BseLI CCNNNNNNNGG 5 cut(s) 28, 88, 94, 115, 137
Bsh1236I CGCG 1 cut(s) 285
BshFI GGCC 2 cut(s) 5, 33
BsiHKCI CYCGRG 1 cut(s) 7
BsiSI CCGG 1 cut(s) 161
BslI CCNNNNNNNGG 5 cut(s) 28, 88, 94, 115, 137
BsmAI GTCTC 2 cut(s) 71, 76
BsmBI CGTCTC 1 cut(s) 76
BsnI GGCC 2 cut(s) 5, 33
BsoBI CYCGRG 1 cut(s) 7
Bsp143I GATC 1 cut(s) 24
BspANI GGCC 2 cut(s) 5, 33
BspFNI CGCG 1 cut(s) 285
BspLI GGNNCC 1 cut(s) 256
BspPI GGATC 1 cut(s) 19
BssECI CCNNGG 2 cut(s) 6, 28
BssMI GATC 1 cut(s) 24
Bst2UI CCWGG 2 cut(s) 29, 89
BstBAI YACGTR 2 cut(s) 262, 293
BstFNI CGCG 1 cut(s) 285
BstKTI GATC 1 cut(s) 27
BstMAI GTCTC 2 cut(s) 71, 76
BstMBI GATC 1 cut(s) 24
BstNI CCWGG 2 cut(s) 29, 89
BstSCI CCNGG 3 cut(s) 27, 87, 160
BstUI CGCG 1 cut(s) 285
BsuRI GGCC 2 cut(s) 5, 33
Cfr13I GGNCC 2 cut(s) 31, 255
CsiI ACCWGGT 1 cut(s) 87
Csp6I GTAC 1 cut(s) 287
CviAII CATG 1 cut(s) 157
CviQI GTAC 1 cut(s) 287
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
DraIII CACNNNGTG 2 cut(s) 91, 178
Eco47I GGWCC 1 cut(s) 255
Eco72I CACGTG 1 cut(s) 293
Eco88I CYCGRG 1 cut(s) 7
EcoO109I RGGNCCY 1 cut(s) 255
EcoRII CCWGG 2 cut(s) 27, 87
Esp3I CGTCTC 1 cut(s) 76
FaeI CATG 1 cut(s) 160
FaiI YATR 2 cut(s) 63, 158
FatI CATG 1 cut(s) 156
HaeIII GGCC 2 cut(s) 5, 33
HapII CCGG 1 cut(s) 161
Hin1II CATG 1 cut(s) 160
HinfI GANTC 1 cut(s) 266
HpaII CCGG 1 cut(s) 161
HphI GGTGA 3 cut(s) 11, 65, 77
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 1 cut(s) 76
Hpy188III TCNNGA 1 cut(s) 221
Hpy8I GTNNAC 1 cut(s) 265
HpyAV CCTTC 3 cut(s) 26, 92, 221
HpyCH4IV ACGT 2 cut(s) 261, 292
HpySE526I ACGT 2 cut(s) 261, 292
Hsp92II CATG 1 cut(s) 160
Kzo9I GATC 1 cut(s) 24
LmnI GCTCC 2 cut(s) 133, 199
LpnPI CCDG 7 cut(s) 14, 35, 41, 74, 101, 174, 237
MabI ACCWGGT 1 cut(s) 87
MaeII ACGT 2 cut(s) 261, 292
MalI GATC 1 cut(s) 26
MboI GATC 1 cut(s) 24
MluI ACGCGT 1 cut(s) 283
MlyI GAGTC 1 cut(s) 260
MnlI CCTC 2 cut(s) 16, 113
MseI TTAA 1 cut(s) 234
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 3 cut(s) 29, 89, 162
MvaI CCWGG 2 cut(s) 29, 89
MvnI CGCG 1 cut(s) 285
NciI CCSGG 1 cut(s) 162
NdeII GATC 1 cut(s) 24
NlaIII CATG 1 cut(s) 160
NlaIV GGNNCC 1 cut(s) 256
PcsI WCGNNNNNNNCGW 1 cut(s) 289
PleI GAGTC 1 cut(s) 260
PmaCI CACGTG 1 cut(s) 293
PmlI CACGTG 1 cut(s) 293
PpsI GAGTC 1 cut(s) 260
Ppu21I YACGTR 2 cut(s) 262, 293
PpuMI RGGWCCY 1 cut(s) 255
Psp5II RGGWCCY 1 cut(s) 255
Psp6I CCWGG 2 cut(s) 27, 87
PspCI CACGTG 1 cut(s) 293
PspGI CCWGG 2 cut(s) 27, 87
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 2 cut(s) 31, 255
PspPPI RGGWCCY 1 cut(s) 255
RsaI GTAC 1 cut(s) 288
RsaNI GTAC 1 cut(s) 287
SaqAI TTAA 1 cut(s) 234
Sau3AI GATC 1 cut(s) 24
Sau96I GGNCC 2 cut(s) 31, 255
SchI GAGTC 1 cut(s) 260
ScrFI CCNGG 3 cut(s) 29, 89, 162
SexAI ACCWGGT 1 cut(s) 87
SinI GGWCC 1 cut(s) 255
StyD4I CCNGG 3 cut(s) 27, 87, 160
TaiI ACGT 2 cut(s) 264, 295
TaqI TCGA 1 cut(s) 222
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TspDTI ATGAA 2 cut(s) 145, 240
VpaK11BI GGWCC 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.