Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0015725

Physical Location & Seq

Genomic Coordinates Forward (+)

2462745 .. 2464704

Gene Structure 1960 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015920

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGCCCCAAGTGCTGAGATGTGTCAACAGCTTCTTACCTCGGAACACATTCCAACTCGTTCTGGTTGACACCGGCGAAGGCTTTGGCGGTCCGTACATCAGCTGTGATGACGTAGCGAGGTGGATGAGGTTTTCCGATAATCGTAATCCATTGATTGAAGATCGGAGACAGAATCACAGAGACGACAAAGAGGGTTTTCGATTTTCGAAGGAGAGTGATTTGGTGAAGAAAATTGAAGAGTCTAAAAGAGAAGAAGAAGGCGGGGATGCGTGTTCATGTCTGATATCGTTTCGTTCTCAGAAGAAGAAGAATAAGAAGAAAAAGAAGGAATACAGTCGAAGGAGGGCGAGGATGGGATGGGTGACGACATCATCGAGGATGATCGGCAAGGACCATGGATCTGGGCTCAGAGAGAGAGACAGAGTGCTCCTAGTCCACCAACTAGGGTTGGCTTCAGAGTCGGAGCTTTACGTCCAGGAGCAGCACCACAAGCTCCTGCTCATGCCTCGCCTCGGGCTTCCATCACCTGATGTTGGGCCTCCAAGTTCCTTGTTGGGTGAAACTGATAGTCTCGTCTTGGACTTCCATCACCTGATGCTGGGCCTCCAAGCTCCTTGTTGGGTGAAACTGATAGTCTCGTCTTGGACTTCCTTTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

220

Amino Acids

25.14

Weight (kDa)

9.24

Isoelectric Point (pI)

64.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015725)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g02830
rosa_chinensis	RchiOBHm_Chr4g0442241 RchiOBHm_Chr5g0056781 RchiOBHm_Chr5g0073021
rosa_laevigata	RLG00000003772 RLG00000011061 RLG00000013117 RLG00000015920 RLG00000017682 RLG00000036400
rosa_multiflora	Rmu_sc0005220.1_g000044 Rmu_sc0010369.1_g000010 Rmu_sc0019790.1_g000002
rosa_roxburghii	Rroxscaffold_5G00371710 Rroxscaffold_5G00371720 Rroxscaffold_7G00178540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	87, 261
AclWI	GGATC	1 cut(s)	406
AcuI	CTGAAG	1 cut(s)	438
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	3 cut(s)	512, 533, 598
AgsI	TTSAA	2 cut(s)	158, 236
AjnI	CCWGG	1 cut(s)	474
AluBI	AGCT	5 cut(s)	30, 102, 466, 493, 611
AluI	AGCT	5 cut(s)	30, 102, 466, 493, 611
Alw21I	GWGCWC	1 cut(s)	429
Alw26I	GTCTC	5 cut(s)	160, 174, 411, 575, 640
AlwI	GGATC	1 cut(s)	406
Ama87I	CYCGRG	1 cut(s)	512
AoxI	GGCC	2 cut(s)	536, 601
ApeKI	GCWGC	1 cut(s)	481
Asp700I	GAANNNNTTC	1 cut(s)	47
AspS9I	GGNCC	4 cut(s)	89, 391, 536, 601
AsuHPI	GGTGA	6 cut(s)	235, 373, 516, 569, 581, 634
AsuII	TTCGAA	1 cut(s)	206
AvaI	CYCGRG	1 cut(s)	512
AvaII	GGWCC	2 cut(s)	89, 391
BanII	GRGCYC	1 cut(s)	408
Bbv12I	GWGCWC	1 cut(s)	429
BbvI	GCAGC	1 cut(s)	493
BccI	CCATC	4 cut(s)	346, 351, 529, 594
BciT130I	CCWGG	1 cut(s)	476
BcoDI	GTCTC	5 cut(s)	160, 174, 411, 575, 640
BfaI	CTAG	2 cut(s)	431, 443
BisI	GCNGC	1 cut(s)	482
BlsI	GCNGC	1 cut(s)	483
Bme1390I	CCNGG	1 cut(s)	476
Bme18I	GGWCC	2 cut(s)	89, 391
BmeT110I	CYCGRG	1 cut(s)	512
BmgT120I	GGNCC	4 cut(s)	89, 391, 536, 601
BmrFI	CCNGG	1 cut(s)	476
BmsI	GCATC	2 cut(s)	256, 585
Bpu14I	TTCGAA	1 cut(s)	206
BsaJI	CCNNGG	3 cut(s)	38, 394, 511
Bsc4I	CCNNNNNNNGG	3 cut(s)	512, 533, 598
Bse118I	RCCGGY	1 cut(s)	71
BseBI	CCWGG	1 cut(s)	476
BseDI	CCNNGG	3 cut(s)	38, 394, 511
BseGI	GGATG	5 cut(s)	129, 271, 357, 362, 384
BseLI	CCNNNNNNNGG	3 cut(s)	512, 533, 598
BseMII	CTCAG	3 cut(s)	5, 311, 421
BseXI	GCAGC	1 cut(s)	493
BseYI	CCCAGC	1 cut(s)	598
BshFI	GGCC	2 cut(s)	538, 603
BsiHKAI	GWGCWC	1 cut(s)	429
BsiHKCI	CYCGRG	1 cut(s)	512
BsiSI	CCGG	1 cut(s)	72
BslI	CCNNNNNNNGG	3 cut(s)	512, 533, 598
BsmAI	GTCTC	5 cut(s)	160, 174, 411, 575, 640
BsmBI	CGTCTC	1 cut(s)	174
BsnI	GGCC	2 cut(s)	538, 603
BsoBI	CYCGRG	1 cut(s)	512
Bsp119I	TTCGAA	1 cut(s)	206
Bsp1286I	GDGCHC	2 cut(s)	408, 429
Bsp143I	GATC	3 cut(s)	160, 381, 398
Bsp19I	CCATGG	1 cut(s)	394
BspACI	CCGC	2 cut(s)	87, 261
BspANI	GGCC	2 cut(s)	538, 603
BspCNI	CTCAG	3 cut(s)	6, 310, 420
BspPI	GGATC	1 cut(s)	406
BspT104I	TTCGAA	1 cut(s)	206
BsrFI	RCCGGY	1 cut(s)	71
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	3 cut(s)	38, 394, 511
BssMI	GATC	3 cut(s)	160, 381, 398
BssT1I	CCWWGG	1 cut(s)	394
Bst2UI	CCWGG	1 cut(s)	476
Bst4CI	ACNGT	1 cut(s)	335
Bst6I	CTCTTC	1 cut(s)	231
BstBI	TTCGAA	1 cut(s)	206
BstDEI	CTNAG	3 cut(s)	14, 297, 407
BstDSI	CCRYGG	1 cut(s)	394
BstF5I	GGATG	5 cut(s)	129, 271, 357, 362, 384
BstKTI	GATC	3 cut(s)	163, 384, 401
BstMAI	GTCTC	5 cut(s)	160, 174, 411, 575, 640
BstMBI	GATC	3 cut(s)	160, 381, 398
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 490
BstNI	CCWGG	1 cut(s)	476
BstSCI	CCNGG	1 cut(s)	474
BstV1I	GCAGC	1 cut(s)	493
BstX2I	RGATCY	1 cut(s)	398
BstXI	CCANNNNNNTGG	1 cut(s)	401
BstYI	RGATCY	1 cut(s)	398
BsuRI	GGCC	2 cut(s)	538, 603
BtgI	CCRYGG	1 cut(s)	394
BtsCI	GGATG	5 cut(s)	129, 271, 357, 362, 384
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	4 cut(s)	89, 391, 536, 601
CpoI	CGGWCCG	1 cut(s)	89
Csp6I	GTAC	1 cut(s)	94
CspI	CGGWCCG	1 cut(s)	89
CviAII	CATG	3 cut(s)	276, 395, 502
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	3 cut(s)	14, 297, 407
DpnI	GATC	3 cut(s)	162, 383, 400
DpnII	GATC	3 cut(s)	160, 381, 398
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Eco130I	CCWWGG	1 cut(s)	394
Eco24I	GRGCYC	1 cut(s)	408
Eco32I	GATATC	1 cut(s)	285
Eco47I	GGWCC	2 cut(s)	89, 391
Eco57I	CTGAAG	1 cut(s)	438
Eco88I	CYCGRG	1 cut(s)	512
EcoRII	CCWGG	1 cut(s)	474
EcoRV	GATATC	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	394
EcoT38I	GRGCYC	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	394
Esp3I	CGTCTC	1 cut(s)	174
FaeI	CATG	3 cut(s)	279, 398, 505
FaiI	YATR	3 cut(s)	277, 396, 503
FatI	CATG	3 cut(s)	275, 394, 501
FauI	CCCGC	1 cut(s)	254
Fnu4HI	GCNGC	1 cut(s)	482
FokI	GGATG	5 cut(s)	136, 278, 364, 369, 391
FriOI	GRGCYC	1 cut(s)	408
Fsp4HI	GCNGC	1 cut(s)	482
FspBI	CTAG	2 cut(s)	431, 443
GluI	GCNGC	1 cut(s)	482
GsaI	CCCAGC	1 cut(s)	602
HaeIII	GGCC	2 cut(s)	538, 603
HapII	CCGG	1 cut(s)	72
Hin1II	CATG	3 cut(s)	279, 398, 505
HincII	GTYRAC	2 cut(s)	25, 67
HindII	GTYRAC	2 cut(s)	25, 67
HinfI	GANTC	3 cut(s)	172, 239, 458
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	6 cut(s)	235, 373, 516, 569, 581, 634
Hpy166II	GTNNAC	3 cut(s)	25, 67, 436
Hpy188I	TCNGA	8 cut(s)	42, 136, 165, 282, 300, 410, 457, 463
Hpy8I	GTNNAC	3 cut(s)	25, 67, 436
HpyAV	CCTTC	5 cut(s)	71, 202, 251, 319, 333
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4IV	ACGT	2 cut(s)	111, 471
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 490
HpyF3I	CTNAG	3 cut(s)	14, 297, 407
HpySE526I	ACGT	2 cut(s)	111, 471
Hsp92II	CATG	3 cut(s)	279, 398, 505
Kzo9I	GATC	3 cut(s)	160, 381, 398
LmnI	GCTCC	5 cut(s)	432, 463, 478, 498, 616
LpnPI	CCDG	9 cut(s)	47, 85, 387, 461, 488, 509, 540, 584, 605
Lsp1109I	GCAGC	1 cut(s)	493
LweI	GCATC	2 cut(s)	256, 585
MaeI	CTAG	2 cut(s)	431, 443
MaeII	ACGT	2 cut(s)	111, 471
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	3 cut(s)	162, 383, 400
MboI	GATC	3 cut(s)	160, 381, 398
MboII	GAAGA	9 cut(s)	170, 238, 248, 263, 266, 313, 316, 319, 328
MflI	RGATCY	1 cut(s)	398
MhlI	GDGCHC	2 cut(s)	408, 429
MluCI	AATT	1 cut(s)	231
MlyI	GAGTC	2 cut(s)	248, 467
MmeI	TCCRAC	2 cut(s)	76, 441
MroXI	GAANNNNTTC	1 cut(s)	47
MspA1I	CMGCKG	1 cut(s)	102
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	476
MvaI	CCWGG	1 cut(s)	476
MwoI	GCNNNNNNNGC	2 cut(s)	10, 490
NcoI	CCATGG	1 cut(s)	394
NdeII	GATC	3 cut(s)	160, 381, 398
NlaIII	CATG	3 cut(s)	279, 398, 505
NmuCI	GTSAC	1 cut(s)	361
NspV	TTCGAA	1 cut(s)	206
PcsI	WCGNNNNNNNCGW	1 cut(s)	371
PdmI	GAANNNNTTC	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	172
PfoI	TCCNGGA	1 cut(s)	474
PkrI	GCNGC	1 cut(s)	483
PleI	GAGTC	2 cut(s)	247, 466
PpsI	GAGTC	2 cut(s)	247, 466
Psp6I	CCWGG	1 cut(s)	474
PspFI	CCCAGC	1 cut(s)	598
PspGI	CCWGG	1 cut(s)	474
PspPI	GGNCC	4 cut(s)	89, 391, 536, 601
PsuI	RGATCY	1 cut(s)	398
PvuII	CAGCTG	1 cut(s)	102
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
Rsr2I	CGGWCCG	1 cut(s)	89
RsrII	CGGWCCG	1 cut(s)	89
SatI	GCNGC	1 cut(s)	482
Sau3AI	GATC	3 cut(s)	160, 381, 398
Sau96I	GGNCC	4 cut(s)	89, 391, 536, 601
SchI	GAGTC	2 cut(s)	248, 467
ScrFI	CCNGG	1 cut(s)	476
SduI	GDGCHC	2 cut(s)	408, 429
SfaNI	GCATC	2 cut(s)	256, 585
SfuI	TTCGAA	1 cut(s)	206
SgrAI	CRCCGGYG	1 cut(s)	71
SinI	GGWCC	2 cut(s)	89, 391
Sse9I	AATT	1 cut(s)	231
SsiI	CCGC	2 cut(s)	87, 261
SspMI	CTAG	2 cut(s)	431, 443
StyD4I	CCNGG	1 cut(s)	474
StyI	CCWWGG	1 cut(s)	394
TaaI	ACNGT	1 cut(s)	335
TaiI	ACGT	2 cut(s)	114, 474
TaqI	TCGA	4 cut(s)	199, 206, 337, 374
TasI	AATT	1 cut(s)	231
TfiI	GAWTC	1 cut(s)	172
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	1 cut(s)	481
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	1 cut(s)	264
TspGWI	ACGGA	1 cut(s)	81
VpaK11BI	GGWCC	2 cut(s)	89, 391
XmnI	GAANNNNTTC	1 cut(s)	47
XspI	CTAG	2 cut(s)	431, 443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.