Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0007871

Physical Location & Seq

Genomic Coordinates Forward (+)

1922471 .. 1923852

Gene Structure 1382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGTTGCCTGTTGATCCGACAAAGAAGCTGTCTTTTACTCGTTGCATTAGTGATGGAGATTTGGTCATTGTCTACGAGAAGTATGATACCATGAAAGCTGTCGAAGTGCGTGCCGGTTCTGTGCTCGGAAACCGGTTCGGCGTGTTTAAGCATTCAGACTGGATAGGGAAGCAGTTTGGTTCCAAGGTTTTCAGCAGCAAGGGAGGATTTGTTTACTTGTTAGCTCCGACTCCCGAGCTTTGGACTTTGGTTTTAAGCCACAGGACTCAGATTCTGTACATTGCAGACATTAGCTTTGTGATCATGTTCTTGGAATTGGTTCCGGGATGTTTGGTTCTCGAGTCGGGGACCGGGAGTGGATCTTTGACTACTTCGCTTGCAAGGGCTGTTGCTCCTAAAGGACATGTCTATACGTTTGATTTCCATGAACAACGCGCTGTCTCGGCTAGGGAGGATTTTGAGAAGACGGGATTAAGCAACTTGGTCAGTGTAGGAGTAAGAGATATTCAGGGCGAAGGATTTCCGGATGAGTTTTCTGGAATGGCAGATTCTGTCTTCCTGGACTTACCCCAACCTTGGCTGGCTATCCCTTCAGCTGCGAAAATGTTGAAACAAGATGGGGTACTATGCTCCTTCTCCCCGTGTATTGAACAGGTGCAACGAGCGTCAGAGACTATGAGATCAAGCCTTACGGATATAAGGACGTTTGAGATACTCCTTCACACATATGAAGTTCGAGAATGGAAATTAGATGACTTCCAAGGCAACGAAGCTGGTTCTGTTGGATCTCATCCACGTAAAAGGCAACATCGATCAAATGAAGGAAGCAATGTGCAGGAAACTACAGGTTCTCCCACGGTCATGGCTAGGCCATGTCGCGACGCCAGAGGCCACACTGGCTATTTGACATTTGCAAGACTCAAATGCCTCTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0031515 GO:0032259 GO:0032991 GO:0034641 GO:0034708 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043527 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0061953 GO:0071704 GO:0080009 GO:0090304 GO:0140098 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCD14

Protein Analysis

312

Amino Acids

34.43

Weight (kDa)

6.71

Isoelectric Point (pI)

29.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCD14	PF08704	69 - 306	1.5e-97	tRNA methyltransferase complex GCD14 subunit
PCMT	PF01135	98 - 162	3.7e-06	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
Methyltransf_31	PF13847	108 - 224	5e-09	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14600
fragaria_vesca	FvH4_6g51011 FvH4_6g51011 FvH4_6g51011
malus_domestica	MD09G1029500.v1.1 MD17G1031500.v1.1
prunus_persica	Prupe.3G287900_v2.0.a1
pyrus_communis	pycom111g02350 pycom17g02900
rosa_chinensis	RchiOBHm_Chr2g0172551
rosa_laevigata	RLG00000002839 RLG00000016014 RLG00000021671 RLG00000022115
rosa_multiflora	Rmu_sc0000912.1_g000006
rosa_roxburghii	Rroxscaffold_2G00079770
rosa_rugosa	Rorug02G0559800
rosa_samantha	Rh2AG635900 Rh2BG649300 Rh2CG616100 Rh2DG663700 Rh3AG202500 Rh3DG228000
rosa_wichuraiana	Rw2G052610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	72
AccII	CGCG	2 cut(s)	435, 879
AccIII	TCCGGA	1 cut(s)	523
AclWI	GGATC	3 cut(s)	8, 367, 793
AcuI	CTGAAG	1 cut(s)	576
AcyI	GRCGYC	1 cut(s)	882
AfaI	GTAC	2 cut(s)	278, 624
AfiI	CCNNNNNNNGG	2 cut(s)	240, 576
AflIII	ACRYGT	1 cut(s)	403
AgeI	ACCGGT	1 cut(s)	132
AgsI	TTSAA	2 cut(s)	610, 650
AjnI	CCWGG	1 cut(s)	558
AloI	GAACNNNNNNTCC	2 cut(s)	318, 350
AluBI	AGCT	7 cut(s)	28, 98, 224, 238, 294, 596, 773
AluI	AGCT	7 cut(s)	28, 98, 224, 238, 294, 596, 773
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	2 cut(s)	445, 665
AlwI	GGATC	3 cut(s)	8, 367, 793
AlwNI	CAGNNNCTG	2 cut(s)	274, 551
Ama87I	CYCGRG	2 cut(s)	233, 338
Aor13HI	TCCGGA	1 cut(s)	523
AoxI	GGCC	2 cut(s)	869, 889
ApeKI	GCWGC	2 cut(s)	195, 596
ArsI	GACNNNNNNTTYG	4 cut(s)	14, 46, 278, 310
AsiGI	ACCGGT	1 cut(s)	132
Asp700I	GAANNNNTTC	2 cut(s)	318, 519
AspLEI	GCGC	1 cut(s)	437
AspS9I	GGNCC	1 cut(s)	348
AsuC2I	CCSGG	2 cut(s)	324, 352
AvaI	CYCGRG	2 cut(s)	233, 338
AvaII	GGWCC	1 cut(s)	348
BbsI	GAAGAC	2 cut(s)	470, 547
Bbv12I	GWGCWC	1 cut(s)	126
BbvI	GCAGC	2 cut(s)	207, 583
BccI	CCATC	2 cut(s)	47, 611
BcgI	CGANNNNNNTGC	2 cut(s)	92, 126
BciT130I	CCWGG	1 cut(s)	560
BclI	TGATCA	1 cut(s)	300
BcnI	CCSGG	2 cut(s)	324, 352
BcoDI	GTCTC	2 cut(s)	445, 665
BfaI	CTAG	2 cut(s)	447, 867
BfmI	CTRYAG	1 cut(s)	843
BglI	GCCNNNNNGGC	1 cut(s)	897
BisI	GCNGC	2 cut(s)	196, 597
BlsI	GCNGC	2 cut(s)	197, 598
Bme1390I	CCNGG	3 cut(s)	324, 352, 560
Bme18I	GGWCC	1 cut(s)	348
BmeT110I	CYCGRG	2 cut(s)	233, 338
BmgT120I	GGNCC	1 cut(s)	348
BmiI	GGNNCC	3 cut(s)	181, 321, 349
BmrFI	CCNGG	3 cut(s)	324, 352, 560
BpiI	GAAGAC	2 cut(s)	470, 547
BpuMI	CCSGG	2 cut(s)	324, 352
Bsa29I	ATCGAT	1 cut(s)	811
BsaAI	YACGTR	1 cut(s)	797
BsaHI	GRCGYC	1 cut(s)	882
BsaJI	CCNNGG	4 cut(s)	183, 575, 760, 855
BsaWI	WCCGGW	2 cut(s)	132, 523
BsaXI	ACNNNNNCTCC	6 cut(s)	48, 78, 195, 225, 835, 865
Bsc4I	CCNNNNNNNGG	2 cut(s)	240, 576
Bse118I	RCCGGY	2 cut(s)	113, 132
Bse1I	ACTGG	2 cut(s)	164, 901
Bse3DI	GCAATG	2 cut(s)	279, 835
BseAI	TCCGGA	1 cut(s)	523
BseBI	CCWGG	1 cut(s)	560
BseCI	ATCGAT	1 cut(s)	811
BseDI	CCNNGG	4 cut(s)	183, 575, 760, 855
BseGI	GGATG	3 cut(s)	332, 532, 790
BseLI	CCNNNNNNNGG	2 cut(s)	240, 576
BseMI	GCAATG	2 cut(s)	279, 835
BseMII	CTCAG	1 cut(s)	281
BseNI	ACTGG	2 cut(s)	164, 901
BseXI	GCAGC	2 cut(s)	207, 583
BsgI	GTGCAG	1 cut(s)	854
Bsh1236I	CGCG	2 cut(s)	435, 879
BshFI	GGCC	2 cut(s)	871, 891
BshTI	ACCGGT	1 cut(s)	132
BshVI	ATCGAT	1 cut(s)	811
BsiHKAI	GWGCWC	1 cut(s)	126
BsiHKCI	CYCGRG	2 cut(s)	233, 338
BsiSI	CCGG	5 cut(s)	114, 133, 323, 351, 524
BslFI	GGGAC	1 cut(s)	361
BslI	CCNNNNNNNGG	2 cut(s)	240, 576
BsmAI	GTCTC	2 cut(s)	445, 665
BsmFI	GGGAC	1 cut(s)	361
BsmI	GAATGC	1 cut(s)	151
BsnI	GGCC	2 cut(s)	871, 891
BsoBI	CYCGRG	2 cut(s)	233, 338
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp13I	TCCGGA	1 cut(s)	523
Bsp1407I	TGTACA	1 cut(s)	276
Bsp143I	GATC	6 cut(s)	13, 300, 359, 680, 785, 812
Bsp68I	TCGCGA	1 cut(s)	879
BspANI	GGCC	2 cut(s)	871, 891
BspCNI	CTCAG	1 cut(s)	280
BspDI	ATCGAT	1 cut(s)	811
BspEI	TCCGGA	1 cut(s)	523
BspFNI	CGCG	2 cut(s)	435, 879
BspLI	GGNNCC	3 cut(s)	181, 321, 349
BspPI	GGATC	3 cut(s)	8, 367, 793
BsrDI	GCAATG	2 cut(s)	279, 835
BsrFI	RCCGGY	2 cut(s)	113, 132
BsrGI	TGTACA	1 cut(s)	276
BsrI	ACTGG	2 cut(s)	164, 901
BssAI	RCCGGY	2 cut(s)	113, 132
BssECI	CCNNGG	4 cut(s)	183, 575, 760, 855
BssMI	GATC	6 cut(s)	13, 300, 359, 680, 785, 812
BssNI	GRCGYC	1 cut(s)	882
BssT1I	CCWWGG	3 cut(s)	183, 575, 760
Bst2UI	CCWGG	1 cut(s)	560
Bst4CI	ACNGT	1 cut(s)	859
BstACI	GRCGYC	1 cut(s)	882
BstAUI	TGTACA	1 cut(s)	276
BstBAI	YACGTR	1 cut(s)	797
BstC8I	GCNNGC	3 cut(s)	111, 378, 582
BstDEI	CTNAG	1 cut(s)	267
BstDSI	CCRYGG	1 cut(s)	855
BstF5I	GGATG	3 cut(s)	332, 532, 790
BstFNI	CGCG	2 cut(s)	435, 879
BstHHI	GCGC	1 cut(s)	437
BstKTI	GATC	6 cut(s)	16, 303, 362, 683, 788, 815
BstMAI	GTCTC	2 cut(s)	445, 665
BstMBI	GATC	6 cut(s)	13, 300, 359, 680, 785, 812
BstMWI	GCNNNNNNNGC	2 cut(s)	443, 897
BstNI	CCWGG	1 cut(s)	560
BstNSI	RCATGY	1 cut(s)	407
BstSCI	CCNGG	3 cut(s)	322, 350, 558
BstSFI	CTRYAG	1 cut(s)	843
BstUI	CGCG	2 cut(s)	435, 879
BstV1I	GCAGC	2 cut(s)	207, 583
BstV2I	GAAGAC	2 cut(s)	470, 547
BstX2I	RGATCY	2 cut(s)	359, 785
BstXI	CCANNNNNNTGG	1 cut(s)	862
BstYI	RGATCY	2 cut(s)	359, 785
Bsu15I	ATCGAT	1 cut(s)	811
BsuRI	GGCC	2 cut(s)	871, 891
BsuTUI	ATCGAT	1 cut(s)	811
BtgI	CCRYGG	1 cut(s)	855
BtsCI	GGATG	3 cut(s)	332, 532, 790
BtsIMutI	CAGTG	2 cut(s)	493, 894
BtuMI	TCGCGA	1 cut(s)	879
Cac8I	GCNNGC	3 cut(s)	111, 378, 582
CaiI	CAGNNNCTG	2 cut(s)	274, 551
CfoI	GCGC	1 cut(s)	437
Cfr10I	RCCGGY	2 cut(s)	113, 132
Cfr13I	GGNCC	1 cut(s)	348
ClaI	ATCGAT	1 cut(s)	811
CseI	GACGC	2 cut(s)	654, 890
Csp6I	GTAC	2 cut(s)	277, 623
CspAI	ACCGGT	1 cut(s)	132
CviAII	CATG	6 cut(s)	91, 304, 404, 425, 862, 873
CviQI	GTAC	2 cut(s)	277, 623
DdeI	CTNAG	1 cut(s)	267
DpnI	GATC	6 cut(s)	15, 302, 361, 682, 787, 814
DpnII	GATC	6 cut(s)	13, 300, 359, 680, 785, 812
Eco130I	CCWWGG	3 cut(s)	183, 575, 760
Eco47I	GGWCC	1 cut(s)	348
Eco57I	CTGAAG	1 cut(s)	576
Eco88I	CYCGRG	2 cut(s)	233, 338
EcoRII	CCWGG	1 cut(s)	558
EcoT14I	CCWWGG	3 cut(s)	183, 575, 760
ErhI	CCWWGG	3 cut(s)	183, 575, 760
FaeI	CATG	6 cut(s)	94, 307, 407, 428, 865, 876
FaqI	GGGAC	1 cut(s)	361
FatI	CATG	6 cut(s)	90, 303, 403, 424, 861, 872
FauNDI	CATATG	1 cut(s)	727
FbaI	TGATCA	1 cut(s)	300
FblI	GTMKAC	1 cut(s)	72
Fnu4HI	GCNGC	2 cut(s)	196, 597
FokI	GGATG	3 cut(s)	339, 539, 777
Fsp4HI	GCNGC	2 cut(s)	196, 597
FspBI	CTAG	2 cut(s)	447, 867
GlaI	GCGC	1 cut(s)	436
GluI	GCNGC	2 cut(s)	196, 597
HaeIII	GGCC	2 cut(s)	871, 891
HapII	CCGG	5 cut(s)	114, 133, 323, 351, 524
HgaI	GACGC	2 cut(s)	654, 890
HhaI	GCGC	1 cut(s)	437
Hin1I	GRCGYC	1 cut(s)	882
Hin1II	CATG	6 cut(s)	94, 307, 407, 428, 865, 876
Hin6I	GCGC	1 cut(s)	435
HinP1I	GCGC	1 cut(s)	435
HinfI	GANTC	6 cut(s)	229, 265, 271, 341, 548, 918
HpaII	CCGG	5 cut(s)	114, 133, 323, 351, 524
Hpy166II	GTNNAC	2 cut(s)	73, 214
Hpy188I	TCNGA	6 cut(s)	18, 128, 157, 228, 270, 670
Hpy188III	TCNNGA	6 cut(s)	233, 338, 524, 537, 737, 878
Hpy8I	GTNNAC	2 cut(s)	73, 214
Hpy99I	CGWCG	1 cut(s)	884
HpyAV	CCTTC	5 cut(s)	509, 600, 643, 728, 815
HpyCH4III	ACNGT	1 cut(s)	859
HpyCH4IV	ACGT	3 cut(s)	413, 704, 796
HpyCH4V	TGCA	6 cut(s)	45, 284, 380, 658, 835, 914
HpyF10VI	GCNNNNNNNGC	2 cut(s)	443, 897
HpyF3I	CTNAG	1 cut(s)	267
HpySE526I	ACGT	3 cut(s)	413, 704, 796
Hsp92I	GRCGYC	1 cut(s)	882
Hsp92II	CATG	6 cut(s)	94, 307, 407, 428, 865, 876
HspAI	GCGC	1 cut(s)	435
Kpn2I	TCCGGA	1 cut(s)	523
Ksp22I	TGATCA	1 cut(s)	300
Kzo9I	GATC	6 cut(s)	13, 300, 359, 680, 785, 812
LmnI	GCTCC	3 cut(s)	229, 397, 635
Lsp1109I	GCAGC	2 cut(s)	207, 583
MaeI	CTAG	2 cut(s)	447, 867
MaeII	ACGT	3 cut(s)	413, 704, 796
MalI	GATC	6 cut(s)	15, 302, 361, 682, 787, 814
MboI	GATC	6 cut(s)	13, 300, 359, 680, 785, 812
MboII	GAAGA	2 cut(s)	475, 547
MflI	RGATCY	2 cut(s)	359, 785
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	2 cut(s)	314, 746
MlyI	GAGTC	4 cut(s)	223, 259, 350, 912
MmeI	TCCRAC	3 cut(s)	41, 251, 763
MnlI	CCTC	3 cut(s)	197, 445, 881
MroI	TCCGGA	1 cut(s)	523
MroXI	GAANNNNTTC	2 cut(s)	318, 519
MseI	TTAA	3 cut(s)	147, 254, 473
MslI	CAYNNNNRTG	2 cut(s)	726, 860
MspA1I	CMGCKG	1 cut(s)	596
MspI	CCGG	5 cut(s)	114, 133, 323, 351, 524
MspR9I	CCNGG	3 cut(s)	324, 352, 560
Mva1269I	GAATGC	1 cut(s)	151
MvaI	CCWGG	1 cut(s)	560
MvnI	CGCG	2 cut(s)	435, 879
MwoI	GCNNNNNNNGC	2 cut(s)	443, 897
NciI	CCSGG	2 cut(s)	324, 352
NdeI	CATATG	1 cut(s)	727
NdeII	GATC	6 cut(s)	13, 300, 359, 680, 785, 812
NlaIII	CATG	6 cut(s)	94, 307, 407, 428, 865, 876
NlaIV	GGNNCC	3 cut(s)	181, 321, 349
NmeAIII	GCCGAG	1 cut(s)	422
NruI	TCGCGA	1 cut(s)	879
NspI	RCATGY	1 cut(s)	407
PaeR7I	CTCGAG	1 cut(s)	338
PciI	ACATGT	1 cut(s)	403
PctI	GAATGC	1 cut(s)	151
PdmI	GAANNNNTTC	2 cut(s)	318, 519
PfeI	GAWTC	2 cut(s)	271, 548
PfoI	TCCNGGA	2 cut(s)	322, 558
PinAI	ACCGGT	1 cut(s)	132
PkrI	GCNGC	2 cut(s)	197, 598
PleI	GAGTC	4 cut(s)	223, 259, 349, 912
PpsI	GAGTC	4 cut(s)	223, 259, 349, 912
Ppu21I	YACGTR	1 cut(s)	797
PscI	ACATGT	1 cut(s)	403
Psp6I	CCWGG	1 cut(s)	558
PspGI	CCWGG	1 cut(s)	558
PspN4I	GGNNCC	3 cut(s)	181, 321, 349
PspPI	GGNCC	1 cut(s)	348
PstNI	CAGNNNCTG	2 cut(s)	274, 551
PsuI	RGATCY	2 cut(s)	359, 785
PvuII	CAGCTG	1 cut(s)	596
RruI	TCGCGA	1 cut(s)	879
RsaI	GTAC	2 cut(s)	278, 624
RsaNI	GTAC	2 cut(s)	277, 623
RseI	CAYNNNNRTG	2 cut(s)	726, 860
SaqAI	TTAA	3 cut(s)	147, 254, 473
SatI	GCNGC	2 cut(s)	196, 597
Sau3AI	GATC	6 cut(s)	13, 300, 359, 680, 785, 812
Sau96I	GGNCC	1 cut(s)	348
SchI	GAGTC	4 cut(s)	223, 259, 350, 912
ScrFI	CCNGG	3 cut(s)	324, 352, 560
SduI	GDGCHC	1 cut(s)	126
SfcI	CTRYAG	1 cut(s)	843
Sfr274I	CTCGAG	1 cut(s)	338
SinI	GGWCC	1 cut(s)	348
SlaI	CTCGAG	1 cut(s)	338
SmiMI	CAYNNNNRTG	2 cut(s)	726, 860
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	2 cut(s)	314, 746
SspMI	CTAG	2 cut(s)	447, 867
StyD4I	CCNGG	3 cut(s)	322, 350, 558
StyI	CCWWGG	3 cut(s)	183, 575, 760
TaaI	ACNGT	1 cut(s)	859
TaiI	ACGT	3 cut(s)	416, 707, 799
TaqI	TCGA	4 cut(s)	102, 339, 736, 811
TasI	AATT	2 cut(s)	314, 746
TatI	WGTACW	1 cut(s)	276
TfiI	GAWTC	2 cut(s)	271, 548
Tru1I	TTAA	3 cut(s)	147, 254, 473
Tru9I	TTAA	3 cut(s)	147, 254, 473
TscAI	CASTG	2 cut(s)	493, 901
TseI	GCWGC	2 cut(s)	195, 596
TspDTI	ATGAA	4 cut(s)	107, 441, 744, 834
TspGWI	ACGGA	1 cut(s)	707
TspRI	CASTG	2 cut(s)	493, 901
VpaK11BI	GGWCC	1 cut(s)	348
XceI	RCATGY	1 cut(s)	407
XhoI	CTCGAG	1 cut(s)	338
XmiI	GTMKAC	1 cut(s)	72
XmnI	GAANNNNTTC	2 cut(s)	318, 519
XspI	CTAG	2 cut(s)	447, 867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.