pycom17g04420

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0007692
Physical Location & Seq
Reverse (-)
3013373 .. 3015003
1631 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 750 bp
ATGTACCCGGGTGGATACACTGCTGAAGTTACAAGCTTGTCCTCTAAAGCTACAGAGGAGGATGTTTATGATTTTTTCAGTCACTGCGGTGCAGTTGAGCATGTTGAAATCATCAGATCTGGTGAATATGCCTGTACCGCATATGTGACATTCAAAGATGCTTTTGCTCTGCAAACTGCTATACTACTCAGTGGAGCTAGGATTGTAGATCAATGTGTATGCATAACAAGGTGGGGAAGTTATACTGATGAATCCGATGCTTGGAACAGTCCTTACAACCCCGAAGGCAATACTAGCTTAACGACTTATCACACGAGTGAGTTCATCTCTGCTCCTGGAGAAGCAGTAACTGTTGTCAAAACAATGGCAGCCAAGGGATATGTTTTGGGGAAAGGCGCATTAACCAAGGCCAAAGCTTTCGATGAGTCCCATCAACTCTCAGCAACTGCAGCAGCCAAGGTTTGCGAGCTCAGCAACAGAATCGGTCTCACTGAAAAAATTTACGCAGGCATGGAAGTTGTTAAAACCGTGGACGAGAAGTTCCATGTTTCAGATATCACCAAATCAACTGCAACCGTTACTGGAACGGCAGCTGTGGTGGCTGCTACGTATGCTGGGCAAGCAACTGTGGCAGCAGGAAGCGCTGTGTTCAACAGCAGCTACTTTGCCAAAGGAGCTCTTTGGTTTTCAGATGTATTGACTCGTGCAAGCAAAGCTGCAGCCGATTTGGGTACTCATGGTGGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

250

Amino Acids

26.27

Weight (kDa)

5.51

Isoelectric Point (pI)

26.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 10 - 69 4.2e-08 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 87, 138
AcsI RAATTY 1 cut(s) 498
AcuI CTGAAG 1 cut(s) 45
AfaI GTAC 3 cut(s) 5, 136, 733
AfeI AGCGCT 1 cut(s) 643
AfiI CCNNNNNNNGG 1 cut(s) 261
AgsI TTSAA 3 cut(s) 107, 154, 652
AjnI CCWGG 1 cut(s) 334
AleI CACNNNNGTG 2 cut(s) 87, 315
AloI GAACNNNNNNTCC 2 cut(s) 524, 556
Alw21I GWGCWC 2 cut(s) 471, 679
Alw26I GTCTC 1 cut(s) 491
AlwNI CAGNNNCTG 3 cut(s) 84, 350, 446
Ama87I CYCGRG 1 cut(s) 7
Aor51HI AGCGCT 1 cut(s) 643
AoxI GGCC 1 cut(s) 408
ApeKI GCWGC 9 cut(s) 368, 449, 452, 590, 602, 632, 657, 716, 719
ApoI RAATTY 1 cut(s) 498
AspLEI GCGC 2 cut(s) 398, 644
AsuC2I CCSGG 2 cut(s) 8, 9
AsuHPI GGTGA 2 cut(s) 134, 550
AvaI CYCGRG 1 cut(s) 7
BanII GRGCYC 2 cut(s) 471, 679
BauI CACGAG 2 cut(s) 313, 702
Bbv12I GWGCWC 2 cut(s) 471, 679
BbvI GCAGC 9 cut(s) 380, 461, 464, 589, 602, 644, 669, 703, 731
BccI CCATC 1 cut(s) 438
BceAI ACGGC 1 cut(s) 603
BcgI CGANNNNNNTGC 2 cut(s) 463, 497
BciT130I CCWGG 1 cut(s) 336
BciVI GTATCC 1 cut(s) 8
BcnI CCSGG 2 cut(s) 8, 9
BcoDI GTCTC 1 cut(s) 491
BfaI CTAG 2 cut(s) 198, 294
BfmI CTRYAG 3 cut(s) 51, 447, 717
BfoI RGCGCY 1 cut(s) 645
BfuI GTATCC 1 cut(s) 8
BglII AGATCT 1 cut(s) 116
BisI GCNGC 9 cut(s) 369, 450, 453, 591, 603, 633, 658, 717, 720
BlpI GCTNAGC 1 cut(s) 470
BlsI GCNGC 9 cut(s) 370, 451, 454, 592, 604, 634, 659, 718, 721
Bme1390I CCNGG 3 cut(s) 8, 9, 336
BmeT110I CYCGRG 1 cut(s) 7
BmrFI CCNGG 3 cut(s) 8, 9, 336
BmsI GCATC 2 cut(s) 148, 247
BplI GAGNNNNNCTC 2 cut(s) 311, 343
BpmI CTGGAG 1 cut(s) 357
Bpu1102I GCTNAGC 1 cut(s) 470
BpuMI CCSGG 2 cut(s) 8, 9
BsaAI YACGTR 1 cut(s) 609
BsaI GGTCTC 1 cut(s) 491
BsaJI CCNNGG 5 cut(s) 7, 372, 405, 456, 528
BsaXI ACNNNNNCTCC 2 cut(s) 330, 360
Bsc4I CCNNNNNNNGG 1 cut(s) 261
Bse1I ACTGG 1 cut(s) 586
BseBI CCWGG 1 cut(s) 336
BseDI CCNNGG 5 cut(s) 7, 372, 405, 456, 528
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 1 cut(s) 261
BseMII CTCAG 3 cut(s) 202, 453, 484
BseNI ACTGG 1 cut(s) 586
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 9 cut(s) 380, 461, 464, 589, 602, 644, 669, 703, 731
BseYI CCCAGC 1 cut(s) 614
BsgI GTGCAG 1 cut(s) 111
BshFI GGCC 1 cut(s) 410
BsiHKAI GWGCWC 2 cut(s) 471, 679
BsiHKCI CYCGRG 1 cut(s) 7
BsiSI CCGG 1 cut(s) 8
BslFI GGGAC 1 cut(s) 412
BslI CCNNNNNNNGG 1 cut(s) 261
BsmAI GTCTC 1 cut(s) 491
BsmFI GGGAC 1 cut(s) 412
BsnI GGCC 1 cut(s) 410
Bso31I GGTCTC 1 cut(s) 491
BsoBI CYCGRG 1 cut(s) 7
Bsp1286I GDGCHC 2 cut(s) 471, 679
Bsp143I GATC 2 cut(s) 116, 208
Bsp1720I GCTNAGC 1 cut(s) 470
BspACI CCGC 2 cut(s) 87, 138
BspANI GGCC 1 cut(s) 410
BspCNI CTCAG 3 cut(s) 201, 452, 483
BspMAI CTGCAG 2 cut(s) 451, 721
BspTNI GGTCTC 1 cut(s) 491
BsrI ACTGG 1 cut(s) 586
BssECI CCNNGG 5 cut(s) 7, 372, 405, 456, 528
BssMI GATC 2 cut(s) 116, 208
BssSI CACGAG 2 cut(s) 313, 702
BssT1I CCWWGG 3 cut(s) 372, 405, 456
Bst2BI CACGAG 2 cut(s) 313, 702
Bst2UI CCWGG 1 cut(s) 336
Bst4CI ACNGT 5 cut(s) 269, 352, 529, 577, 628
BstBAI YACGTR 1 cut(s) 609
BstC8I GCNNGC 4 cut(s) 467, 508, 621, 709
BstDEI CTNAG 3 cut(s) 188, 439, 470
BstDSI CCRYGG 1 cut(s) 528
BstF5I GGATG 1 cut(s) 67
BstH2I RGCGCY 1 cut(s) 645
BstHHI GCGC 2 cut(s) 398, 644
BstKTI GATC 2 cut(s) 119, 211
BstMAI GTCTC 1 cut(s) 491
BstMBI GATC 2 cut(s) 116, 208
BstNI CCWGG 1 cut(s) 336
BstNSI RCATGY 1 cut(s) 104
BstSCI CCNGG 3 cut(s) 6, 7, 334
BstSFI CTRYAG 3 cut(s) 51, 447, 717
BstSNI TACGTA 1 cut(s) 609
BstV1I GCAGC 9 cut(s) 380, 461, 464, 589, 602, 644, 669, 703, 731
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
BsuI GTATCC 1 cut(s) 8
BsuRI GGCC 1 cut(s) 410
BtgI CCRYGG 1 cut(s) 528
BtsCI GGATG 1 cut(s) 67
BtsI GCAGTG 2 cut(s) 18, 82
BtsIMutI CAGTG 4 cut(s) 18, 82, 196, 489
Cac8I GCNNGC 4 cut(s) 467, 508, 621, 709
CaiI CAGNNNCTG 3 cut(s) 84, 350, 446
CfoI GCGC 2 cut(s) 398, 644
Cfr9I CCCGGG 1 cut(s) 7
Csp6I GTAC 3 cut(s) 4, 135, 732
CviAII CATG 4 cut(s) 101, 511, 545, 737
CviQI GTAC 3 cut(s) 4, 135, 732
DdeI CTNAG 3 cut(s) 188, 439, 470
DpnI GATC 2 cut(s) 118, 210
DpnII GATC 2 cut(s) 116, 208
Ecl136II GAGCTC 2 cut(s) 469, 677
Eco105I TACGTA 1 cut(s) 609
Eco130I CCWWGG 3 cut(s) 372, 405, 456
Eco24I GRGCYC 2 cut(s) 471, 679
Eco31I GGTCTC 1 cut(s) 491
Eco32I GATATC 1 cut(s) 556
Eco47III AGCGCT 1 cut(s) 643
Eco53kI GAGCTC 2 cut(s) 469, 677
Eco57I CTGAAG 1 cut(s) 45
Eco88I CYCGRG 1 cut(s) 7
EcoICRI GAGCTC 2 cut(s) 469, 677
EcoRII CCWGG 1 cut(s) 334
EcoRV GATATC 1 cut(s) 556
EcoT14I CCWWGG 3 cut(s) 372, 405, 456
EcoT22I ATGCAT 1 cut(s) 224
EcoT38I GRGCYC 2 cut(s) 471, 679
ErhI CCWWGG 3 cut(s) 372, 405, 456
FaeI CATG 4 cut(s) 104, 514, 548, 740
FalI AAGNNNNNCTT 2 cut(s) 663, 695
FaqI GGGAC 1 cut(s) 412
FatI CATG 4 cut(s) 100, 510, 544, 736
FauNDI CATATG 1 cut(s) 142
Fnu4HI GCNGC 9 cut(s) 369, 450, 453, 591, 603, 633, 658, 717, 720
FokI GGATG 1 cut(s) 74
FriOI GRGCYC 2 cut(s) 471, 679
Fsp4HI GCNGC 9 cut(s) 369, 450, 453, 591, 603, 633, 658, 717, 720
FspBI CTAG 2 cut(s) 198, 294
GlaI GCGC 2 cut(s) 397, 643
GluI GCNGC 9 cut(s) 369, 450, 453, 591, 603, 633, 658, 717, 720
GsaI CCCAGC 1 cut(s) 618
GsuI CTGGAG 1 cut(s) 357
HaeII RGCGCY 1 cut(s) 645
HaeIII GGCC 1 cut(s) 410
HapII CCGG 1 cut(s) 8
HhaI GCGC 2 cut(s) 398, 644
Hin1II CATG 4 cut(s) 104, 514, 548, 740
Hin6I GCGC 2 cut(s) 396, 642
HinP1I GCGC 2 cut(s) 396, 642
HindIII AAGCTT 2 cut(s) 34, 414
HinfI GANTC 4 cut(s) 251, 425, 480, 700
HpaII CCGG 1 cut(s) 8
HphI GGTGA 2 cut(s) 134, 550
Hpy166II GTNNAC 1 cut(s) 532
Hpy188I TCNGA 4 cut(s) 116, 256, 553, 691
Hpy8I GTNNAC 1 cut(s) 532
HpyAV CCTTC 1 cut(s) 278
HpyCH4III ACNGT 5 cut(s) 269, 352, 529, 577, 628
HpyCH4IV ACGT 1 cut(s) 608
HpyCH4V TGCA 7 cut(s) 92, 172, 222, 449, 572, 707, 719
HpyF3I CTNAG 3 cut(s) 188, 439, 470
HpySE526I ACGT 1 cut(s) 608
Hsp92II CATG 4 cut(s) 104, 514, 548, 740
HspAI GCGC 2 cut(s) 396, 642
Kzo9I GATC 2 cut(s) 116, 208
LmnI GCTCC 3 cut(s) 194, 337, 674
LpnPI CCDG 9 cut(s) 21, 105, 145, 321, 348, 492, 567, 600, 621
Lsp1109I GCAGC 9 cut(s) 380, 461, 464, 589, 602, 644, 669, 703, 731
LweI GCATC 2 cut(s) 148, 247
MaeI CTAG 2 cut(s) 198, 294
MaeII ACGT 1 cut(s) 608
MaeIII GTNAC 5 cut(s) 28, 80, 145, 346, 577
MalI GATC 2 cut(s) 118, 210
MboI GATC 2 cut(s) 116, 208
MflI RGATCY 1 cut(s) 116
MhlI GDGCHC 2 cut(s) 471, 679
MluCI AATT 1 cut(s) 498
MlyI GAGTC 2 cut(s) 434, 694
MnlI CCTC 3 cut(s) 49, 52, 52
Mph1103I ATGCAT 1 cut(s) 224
MseI TTAA 3 cut(s) 299, 401, 522
MslI CAYNNNNRTG 2 cut(s) 87, 315
MspA1I CMGCKG 1 cut(s) 593
MspI CCGG 1 cut(s) 8
MspR9I CCNGG 3 cut(s) 8, 9, 336
MvaI CCWGG 1 cut(s) 336
NciI CCSGG 2 cut(s) 8, 9
NdeI CATATG 1 cut(s) 142
NdeII GATC 2 cut(s) 116, 208
NlaIII CATG 4 cut(s) 104, 514, 548, 740
NmuCI GTSAC 2 cut(s) 80, 145
NsiI ATGCAT 1 cut(s) 224
NspI RCATGY 1 cut(s) 104
OliI CACNNNNGTG 2 cut(s) 87, 315
PfeI GAWTC 2 cut(s) 251, 480
PfoI TCCNGGA 1 cut(s) 334
PkrI GCNGC 9 cut(s) 370, 451, 454, 592, 604, 634, 659, 718, 721
PleI GAGTC 2 cut(s) 433, 694
PpsI GAGTC 2 cut(s) 433, 694
Ppu21I YACGTR 1 cut(s) 609
Psp124BI GAGCTC 2 cut(s) 471, 679
Psp6I CCWGG 1 cut(s) 334
PspFI CCCAGC 1 cut(s) 614
PspGI CCWGG 1 cut(s) 334
PsrI GAACNNNNNNTAC 2 cut(s) 257, 289
PstI CTGCAG 2 cut(s) 451, 721
PstNI CAGNNNCTG 3 cut(s) 84, 350, 446
PsuI RGATCY 1 cut(s) 116
PvuII CAGCTG 1 cut(s) 593
RsaI GTAC 3 cut(s) 5, 136, 733
RsaNI GTAC 3 cut(s) 4, 135, 732
RseI CAYNNNNRTG 2 cut(s) 87, 315
SacI GAGCTC 2 cut(s) 471, 679
SaqAI TTAA 3 cut(s) 299, 401, 522
SatI GCNGC 9 cut(s) 369, 450, 453, 591, 603, 633, 658, 717, 720
Sau3AI GATC 2 cut(s) 116, 208
SchI GAGTC 2 cut(s) 434, 694
ScrFI CCNGG 3 cut(s) 8, 9, 336
SduI GDGCHC 2 cut(s) 471, 679
SfaNI GCATC 2 cut(s) 148, 247
SfcI CTRYAG 3 cut(s) 51, 447, 717
SmaI CCCGGG 1 cut(s) 9
SmiMI CAYNNNNRTG 2 cut(s) 87, 315
SnaBI TACGTA 1 cut(s) 609
Sse9I AATT 1 cut(s) 498
SsiI CCGC 2 cut(s) 87, 138
SspMI CTAG 2 cut(s) 198, 294
SstI GAGCTC 2 cut(s) 471, 679
StyD4I CCNGG 3 cut(s) 6, 7, 334
StyI CCWWGG 3 cut(s) 372, 405, 456
TaaI ACNGT 5 cut(s) 269, 352, 529, 577, 628
TaiI ACGT 1 cut(s) 611
TaqI TCGA 1 cut(s) 420
TaqII GACCGA 1 cut(s) 473
TasI AATT 1 cut(s) 498
TfiI GAWTC 2 cut(s) 251, 480
Tru1I TTAA 3 cut(s) 299, 401, 522
Tru9I TTAA 3 cut(s) 299, 401, 522
TscAI CASTG 4 cut(s) 25, 89, 196, 496
TseFI GTSAC 2 cut(s) 80, 145
TseI GCWGC 9 cut(s) 368, 449, 452, 590, 602, 632, 657, 716, 719
Tsp45I GTSAC 2 cut(s) 80, 145
TspDTI ATGAA 2 cut(s) 264, 313
TspMI CCCGGG 1 cut(s) 7
TspRI CASTG 4 cut(s) 25, 89, 196, 496
XapI RAATTY 1 cut(s) 498
XceI RCATGY 1 cut(s) 104
XmaI CCCGGG 1 cut(s) 7
XspI CTAG 2 cut(s) 198, 294
Zsp2I ATGCAT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.