pycom17g04940

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0011588
Physical Location & Seq
Forward (+)
3428027 .. 3429470
1444 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1326 bp
ATGCCGCTGCCAGGGCAGCAACAATGGCAAGCAAGACTGAGCTTCAGCCTGGCCTACATGGCCCAGAACTGCCTCTCCATGACACACCTCAAGCAAATACACGGCCACGCGGTCGTCACAAACCTCCAGCACCACGCCATCGTCCTCGCCAAGATGTTCCGCTTCGCCGCCATCTCGCCCTCCGGTGACTTAAGCTACGCTCACCGCCTGTTCGATCAAATGCCCCAACCAAACACTTTCTTCTACAACACCCTCATCCGGGGCTACTCTAAAAGCTCGTCTCCGTCGCAATCGGTGGTTCTTTTCAACCAGATGAGGCTGAACTGCGTCGACCCAGATGAGTTTACCTTCACGTTTGTGCTGAAATCGCCGTCAAGAATGAAAATTGATGCGAACGCATTGATTCACATATATGGGGCGAGAGGGATACCGGTTGCGGTGAGGCGAGTTTTCGATGAAGCAGTGGCTCATGACGTCGTTTCGTGGTCGGGTTTGGTTATTGCGCATGTGAGAGCGGGGGAATTGGAGTTTGCACGGCAGGTGTTTGATGAGATGCCTGAGAGGGATGTGGTTTCTTGGACTGCTATGATCTCTGCGTATTCCCAAGCAAAGTATTCGAGAGAAGCGCTTGATTTGTTTTGGGAGATGAATCGTGAGGGAGTGATGCCCGATGAAGTCACGATGGTGAGTGTAATCTCAGCTTGTGCGGCTTCCGGAGATGTGGAAACGGGGGTATGCATCCACCAATATATTGATGACAATGGGTTTTTGTGGATGGTTTTGCTCTGCAATGCGCTGATTGACATGTACGCGAAGTGTGGATGCATGGAGCGAGCGTGGCAAGTGTTTGATAAGATGAGCCGGAAGAGCTTGGTCACTTGGAATTCGATGATTTCAGCATGTGCAAACCATGGCAATGCCGACGATGCGTTTGATTTGTTTGAGTGCATGACTGCTGCTGGTGTTGCACCGGATGGGAGAATACAAACAGACTATAGAATCGAGGCACGAATTGAGCATTACGGTTGCATGGTTGATATTTTAGGGAAGGCAGGACGGTTGGAGGAAGCATACGGACTGATTAGTAATATGCCAATCCCGGGCAACGATGTTGTTTGGGGAACACTGCTTGTAGCTTGCAGAACTTATGGGGATGCTGGTATGGGCGAGAGGGTCGTGAATAGGCTGTTAGAGTTGAAATACTACATTCTCCTTCGTGATATTTATGTCACGGCCGGAAGGACAATGGAAGCAAATGCGATGGGGCGACGCATGAATGTTAACGATGCTAGTAAGACTCCCGGATGCAGCTGGGTGGGAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

442

Amino Acids

49.29

Weight (kDa)

5.96

Isoelectric Point (pI)

42.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 77 - 122 2.4e-09 PPR repeat family
PPR_2 PF13041 188 - 236 3.2e-12 PPR repeat family
PPR PF01535 191 - 221 6.8e-08 PPR repeat
PPR_2 PF13041 262 - 290 8.7e-06 PPR repeat family
PPR PF01535 263 - 289 6.2e-06 PPR repeat
PPR_2 PF13041 290 - 325 4.2e-08 PPR repeat family
PPR PF01535 292 - 322 1e-08 PPR repeat
E_motif PF20431 383 - 439 4.8e-07 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 529
AatII GACGTC 1 cut(s) 477
Acc16I TGCGCA 1 cut(s) 504
Acc36I ACCTGC 1 cut(s) 529
AccBSI CCGCTC 1 cut(s) 515
AccI GTMKAC 1 cut(s) 330
AccII CGCG 2 cut(s) 110, 812
AccIII TCCGGA 1 cut(s) 713
AciI CCGC 8 cut(s) 5, 110, 160, 168, 205, 437, 515, 707
AcoI YGGCCR 2 cut(s) 103, 1233
AcsI RAATTY 1 cut(s) 883
AcuI CTGAAG 1 cut(s) 28
AcyI GRCGYC 1 cut(s) 474
AfaI GTAC 1 cut(s) 809
AfeI AGCGCT 1 cut(s) 627
AfiI CCNNNNNNNGG 4 cut(s) 11, 258, 259, 1100
AflII CTTAAG 1 cut(s) 190
AflIII ACRYGT 1 cut(s) 804
AgeI ACCGGT 1 cut(s) 430
AgsI TTSAA 2 cut(s) 307, 1198
AjnI CCWGG 2 cut(s) 10, 48
AleI CACNNNNGTG 2 cut(s) 356, 683
AloI GAACNNNNNNTCC 2 cut(s) 59, 91
AluBI AGCT 7 cut(s) 42, 195, 276, 701, 870, 1136, 1311
AluI AGCT 7 cut(s) 42, 195, 276, 701, 870, 1136, 1311
Alw26I GTCTC 1 cut(s) 285
Ama87I CYCGRG 1 cut(s) 1099
Aor13HI TCCGGA 1 cut(s) 713
Aor51HI AGCGCT 1 cut(s) 627
AoxI GGCC 4 cut(s) 51, 60, 103, 1233
ApeKI GCWGC 4 cut(s) 7, 16, 956, 1308
ApoI RAATTY 1 cut(s) 883
ArsI GACNNNNNNTTYG 2 cut(s) 914, 946
AsiGI ACCGGT 1 cut(s) 430
AspLEI GCGC 3 cut(s) 505, 628, 796
AspS9I GGNCC 1 cut(s) 61
AsuC2I CCSGG 4 cut(s) 260, 1100, 1101, 1302
AsuHPI GGTGA 4 cut(s) 194, 197, 451, 697
AvaI CYCGRG 1 cut(s) 1099
BbvI GCAGC 3 cut(s) 28, 943, 1320
BccI CCATC 6 cut(s) 146, 179, 676, 769, 968, 1255
BceAI ACGGC 4 cut(s) 118, 355, 551, 1248
BcgI CGANNNNNNTGC 2 cut(s) 597, 631
BciT130I CCWGG 2 cut(s) 12, 50
BciVI GTATCC 1 cut(s) 420
BcnI CCSGG 4 cut(s) 260, 1100, 1101, 1302
BcoDI GTCTC 1 cut(s) 285
BfaI CTAG 1 cut(s) 1290
BfmI CTRYAG 1 cut(s) 994
BfoI RGCGCY 1 cut(s) 629
BfrI CTTAAG 1 cut(s) 190
BfuAI ACCTGC 1 cut(s) 529
BfuI GTATCC 1 cut(s) 420
BglI GCCNNNNNGGC 1 cut(s) 59
BisI GCNGC 7 cut(s) 5, 8, 17, 168, 708, 957, 1309
BlsI GCNGC 7 cut(s) 6, 9, 18, 169, 709, 958, 1310
Bme1390I CCNGG 6 cut(s) 12, 50, 260, 1100, 1101, 1302
BmeT110I CYCGRG 1 cut(s) 1099
BmgT120I GGNCC 1 cut(s) 61
BmrFI CCNGG 6 cut(s) 12, 50, 260, 1100, 1101, 1302
BmsI GCATC 9 cut(s) 379, 543, 654, 747, 812, 916, 1144, 1276, 1295
BpmI CTGGAG 1 cut(s) 110
BpuEI CTTGAG 1 cut(s) 74
BpuMI CCSGG 4 cut(s) 260, 1100, 1101, 1302
BsaHI GRCGYC 1 cut(s) 474
BsaJI CCNNGG 4 cut(s) 11, 259, 910, 1099
BsaWI WCCGGW 4 cut(s) 182, 430, 713, 970
BsaXI ACNNNNNCTCC 4 cut(s) 59, 89, 821, 851
Bsc4I CCNNNNNNNGG 4 cut(s) 11, 258, 259, 1100
Bse118I RCCGGY 1 cut(s) 430
Bse3DI GCAATG 2 cut(s) 796, 922
BseAI TCCGGA 1 cut(s) 713
BseBI CCWGG 2 cut(s) 12, 50
BseDI CCNNGG 4 cut(s) 11, 259, 910, 1099
BseGI GGATG 8 cut(s) 255, 571, 738, 780, 827, 979, 1159, 1310
BseLI CCNNNNNNNGG 4 cut(s) 11, 258, 259, 1100
BseMI GCAATG 2 cut(s) 796, 922
BseMII CTCAG 3 cut(s) 29, 549, 711
BseX3I CGGCCG 1 cut(s) 1233
BseXI GCAGC 3 cut(s) 28, 943, 1320
BseYI CCCAGC 1 cut(s) 1311
Bsh1236I CGCG 2 cut(s) 110, 812
Bsh1285I CGRYCG 2 cut(s) 114, 1236
BshFI GGCC 4 cut(s) 53, 62, 105, 1235
BshTI ACCGGT 1 cut(s) 430
BsiEI CGRYCG 2 cut(s) 114, 1236
BsiHKCI CYCGRG 1 cut(s) 1099
BsiSI CCGG 9 cut(s) 183, 259, 431, 714, 862, 971, 1100, 1236, 1302
BslI CCNNNNNNNGG 4 cut(s) 11, 258, 259, 1100
BsmAI GTCTC 1 cut(s) 285
BsmBI CGTCTC 1 cut(s) 285
BsnI GGCC 4 cut(s) 53, 62, 105, 1235
BsoBI CYCGRG 1 cut(s) 1099
Bsp13I TCCGGA 1 cut(s) 713
Bsp143I GATC 2 cut(s) 214, 588
Bsp19I CCATGG 1 cut(s) 910
BspACI CCGC 8 cut(s) 5, 110, 160, 168, 205, 437, 515, 707
BspANI GGCC 4 cut(s) 53, 62, 105, 1235
BspCNI CTCAG 3 cut(s) 30, 550, 710
BspEI TCCGGA 1 cut(s) 713
BspFNI CGCG 2 cut(s) 110, 812
BspHI TCATGA 1 cut(s) 469
BspMI ACCTGC 1 cut(s) 529
BspQI GCTCTTC 1 cut(s) 860
BspTI CTTAAG 1 cut(s) 190
BsrBI CCGCTC 1 cut(s) 515
BsrDI GCAATG 2 cut(s) 796, 922
BsrFI RCCGGY 1 cut(s) 430
BssAI RCCGGY 1 cut(s) 430
BssECI CCNNGG 4 cut(s) 11, 259, 910, 1099
BssMI GATC 2 cut(s) 214, 588
BssNI GRCGYC 1 cut(s) 474
BssT1I CCWWGG 1 cut(s) 910
Bst2UI CCWGG 2 cut(s) 12, 50
Bst4CI ACNGT 2 cut(s) 1025, 1059
Bst6I CTCTTC 1 cut(s) 860
BstACI GRCGYC 1 cut(s) 474
BstAFI CTTAAG 1 cut(s) 190
BstC8I GCNNGC 3 cut(s) 30, 834, 1138
BstDEI CTNAG 3 cut(s) 38, 558, 697
BstDSI CCRYGG 1 cut(s) 910
BstF5I GGATG 8 cut(s) 255, 571, 738, 780, 827, 979, 1159, 1310
BstFNI CGCG 2 cut(s) 110, 812
BstH2I RGCGCY 1 cut(s) 629
BstHHI GCGC 3 cut(s) 505, 628, 796
BstKTI GATC 2 cut(s) 217, 591
BstMAI GTCTC 1 cut(s) 285
BstMBI GATC 2 cut(s) 214, 588
BstMCI CGRYCG 2 cut(s) 114, 1236
BstNI CCWGG 2 cut(s) 12, 50
BstNSI RCATGY 3 cut(s) 509, 808, 903
BstSCI CCNGG 6 cut(s) 10, 48, 258, 1098, 1099, 1300
BstSFI CTRYAG 1 cut(s) 994
BstUI CGCG 2 cut(s) 110, 812
BstV1I GCAGC 3 cut(s) 28, 943, 1320
BstZI CGGCCG 1 cut(s) 1233
BsuI GTATCC 1 cut(s) 420
BsuRI GGCC 4 cut(s) 53, 62, 105, 1235
BtgI CCRYGG 1 cut(s) 910
BtgZI GCGATG 1 cut(s) 1274
BtsCI GGATG 8 cut(s) 255, 571, 738, 780, 827, 979, 1159, 1310
BtsI GCAGTG 2 cut(s) 468, 1124
BtsIMutI CAGTG 2 cut(s) 468, 1124
BveI ACCTGC 1 cut(s) 529
Cac8I GCNNGC 3 cut(s) 30, 834, 1138
CciI TCATGA 1 cut(s) 469
CfoI GCGC 3 cut(s) 505, 628, 796
Cfr10I RCCGGY 1 cut(s) 430
Cfr13I GGNCC 1 cut(s) 61
Cfr9I CCCGGG 1 cut(s) 1099
CseI GACGC 2 cut(s) 316, 1278
Csp6I GTAC 1 cut(s) 808
CspAI ACCGGT 1 cut(s) 430
CviQI GTAC 1 cut(s) 808
DdeI CTNAG 3 cut(s) 38, 558, 697
DpnI GATC 2 cut(s) 216, 590
DpnII GATC 2 cut(s) 214, 588
EaeI YGGCCR 2 cut(s) 103, 1233
EagI CGGCCG 1 cut(s) 1233
Eam1104I CTCTTC 1 cut(s) 860
EarI CTCTTC 1 cut(s) 860
EclXI CGGCCG 1 cut(s) 1233
Eco130I CCWWGG 1 cut(s) 910
Eco47III AGCGCT 1 cut(s) 627
Eco52I CGGCCG 1 cut(s) 1233
Eco57I CTGAAG 1 cut(s) 28
Eco88I CYCGRG 1 cut(s) 1099
EcoRI GAATTC 1 cut(s) 883
EcoRII CCWGG 2 cut(s) 10, 48
EcoT14I CCWWGG 1 cut(s) 910
EcoT22I ATGCAT 2 cut(s) 740, 827
ErhI CCWWGG 1 cut(s) 910
Esp3I CGTCTC 1 cut(s) 285
FauI CCCGC 1 cut(s) 508
FblI GTMKAC 1 cut(s) 330
Fnu4HI GCNGC 7 cut(s) 5, 8, 17, 168, 708, 957, 1309
FokI GGATG 8 cut(s) 242, 578, 725, 787, 834, 986, 1166, 1317
Fsp4HI GCNGC 7 cut(s) 5, 8, 17, 168, 708, 957, 1309
FspBI CTAG 1 cut(s) 1290
FspI TGCGCA 1 cut(s) 504
GlaI GCGC 3 cut(s) 504, 627, 795
GluI GCNGC 7 cut(s) 5, 8, 17, 168, 708, 957, 1309
GsaI CCCAGC 1 cut(s) 1315
GsuI CTGGAG 1 cut(s) 110
HaeII RGCGCY 1 cut(s) 629
HaeIII GGCC 4 cut(s) 53, 62, 105, 1235
HapII CCGG 9 cut(s) 183, 259, 431, 714, 862, 971, 1100, 1236, 1302
HgaI GACGC 2 cut(s) 316, 1278
HhaI GCGC 3 cut(s) 505, 628, 796
Hin1I GRCGYC 1 cut(s) 474
Hin6I GCGC 3 cut(s) 503, 626, 794
HinP1I GCGC 3 cut(s) 503, 626, 794
HincII GTYRAC 2 cut(s) 331, 1282
HindII GTYRAC 2 cut(s) 331, 1282
HinfI GANTC 4 cut(s) 403, 649, 999, 1297
HpaI GTTAAC 1 cut(s) 1282
HpaII CCGG 9 cut(s) 183, 259, 431, 714, 862, 971, 1100, 1236, 1302
HphI GGTGA 4 cut(s) 194, 197, 451, 697
Hpy166II GTNNAC 3 cut(s) 331, 345, 1282
Hpy188III TCNNGA 8 cut(s) 375, 470, 618, 653, 679, 714, 1177, 1217
Hpy8I GTNNAC 3 cut(s) 331, 345, 1282
Hpy99I CGWCG 5 cut(s) 289, 332, 479, 926, 1272
HpyAV CCTTC 4 cut(s) 358, 1042, 1223, 1233
HpyCH4III ACNGT 2 cut(s) 1025, 1059
HpyCH4IV ACGT 2 cut(s) 353, 474
HpyF3I CTNAG 3 cut(s) 38, 558, 697
HpySE526I ACGT 2 cut(s) 353, 474
Hsp92I GRCGYC 1 cut(s) 474
HspAI GCGC 3 cut(s) 503, 626, 794
Kpn2I TCCGGA 1 cut(s) 713
KspAI GTTAAC 1 cut(s) 1282
Kzo9I GATC 2 cut(s) 214, 588
LguI GCTCTTC 1 cut(s) 860
LmnI GCTCC 2 cut(s) 829, 1319
Lsp1109I GCAGC 3 cut(s) 28, 943, 1320
LweI GCATC 9 cut(s) 379, 543, 654, 747, 812, 916, 1144, 1276, 1295
MaeI CTAG 1 cut(s) 1290
MaeII ACGT 2 cut(s) 353, 474
MaeIII GTNAC 5 cut(s) 115, 185, 676, 874, 1228
MalI GATC 2 cut(s) 216, 590
MbiI CCGCTC 1 cut(s) 515
MboI GATC 2 cut(s) 214, 588
MboII GAAGA 2 cut(s) 232, 877
MluCI AATT 4 cut(s) 384, 521, 883, 1011
MlyI GAGTC 1 cut(s) 1291
MmeI TCCRAC 1 cut(s) 1041
Mph1103I ATGCAT 2 cut(s) 740, 827
MroI TCCGGA 1 cut(s) 713
MseI TTAA 2 cut(s) 191, 1281
MslI CAYNNNNRTG 4 cut(s) 356, 411, 683, 915
MspA1I CMGCKG 2 cut(s) 7, 1311
MspCI CTTAAG 1 cut(s) 190
MspI CCGG 9 cut(s) 183, 259, 431, 714, 862, 971, 1100, 1236, 1302
MspR9I CCNGG 6 cut(s) 12, 50, 260, 1100, 1101, 1302
MvaI CCWGG 2 cut(s) 12, 50
MvnI CGCG 2 cut(s) 110, 812
NciI CCSGG 4 cut(s) 260, 1100, 1101, 1302
NcoI CCATGG 1 cut(s) 910
NdeII GATC 2 cut(s) 214, 588
NmuCI GTSAC 5 cut(s) 115, 185, 676, 874, 1228
NsbI TGCGCA 1 cut(s) 504
NsiI ATGCAT 2 cut(s) 740, 827
NspI RCATGY 3 cut(s) 509, 808, 903
OliI CACNNNNGTG 2 cut(s) 356, 683
PagI TCATGA 1 cut(s) 469
PaqCI CACCTGC 1 cut(s) 529
PciI ACATGT 1 cut(s) 804
PciSI GCTCTTC 1 cut(s) 860
PfeI GAWTC 3 cut(s) 403, 649, 999
PfoI TCCNGGA 1 cut(s) 1300
PinAI ACCGGT 1 cut(s) 430
PkrI GCNGC 7 cut(s) 6, 9, 18, 169, 709, 958, 1310
PleI GAGTC 1 cut(s) 1291
PpsI GAGTC 1 cut(s) 1291
PscI ACATGT 1 cut(s) 804
Psp6I CCWGG 2 cut(s) 10, 48
PspFI CCCAGC 1 cut(s) 1311
PspGI CCWGG 2 cut(s) 10, 48
PspPI GGNCC 1 cut(s) 61
PvuII CAGCTG 1 cut(s) 1311
RsaI GTAC 1 cut(s) 809
RsaNI GTAC 1 cut(s) 808
RseI CAYNNNNRTG 4 cut(s) 356, 411, 683, 915
SalI GTCGAC 1 cut(s) 329
SapI GCTCTTC 1 cut(s) 860
SaqAI TTAA 2 cut(s) 191, 1281
SatI GCNGC 7 cut(s) 5, 8, 17, 168, 708, 957, 1309
Sau3AI GATC 2 cut(s) 214, 588
Sau96I GGNCC 1 cut(s) 61
SchI GAGTC 1 cut(s) 1291
ScrFI CCNGG 6 cut(s) 12, 50, 260, 1100, 1101, 1302
SfaNI GCATC 9 cut(s) 379, 543, 654, 747, 812, 916, 1144, 1276, 1295
SfcI CTRYAG 1 cut(s) 994
SfiI GGCCNNNNNGGCC 1 cut(s) 59
SmaI CCCGGG 1 cut(s) 1101
SmiMI CAYNNNNRTG 4 cut(s) 356, 411, 683, 915
SmlI CTYRAG 2 cut(s) 89, 190
SmoI CTYRAG 2 cut(s) 89, 190
Sse9I AATT 4 cut(s) 384, 521, 883, 1011
SsiI CCGC 8 cut(s) 5, 110, 160, 168, 205, 437, 515, 707
SspMI CTAG 1 cut(s) 1290
StyD4I CCNGG 6 cut(s) 10, 48, 258, 1098, 1099, 1300
StyI CCWWGG 1 cut(s) 910
TaaI ACNGT 2 cut(s) 1025, 1059
TaiI ACGT 2 cut(s) 356, 477
TaqI TCGA 6 cut(s) 213, 330, 453, 617, 887, 1002
TasI AATT 4 cut(s) 384, 521, 883, 1011
TauI GCSGC 3 cut(s) 7, 170, 710
TfiI GAWTC 3 cut(s) 403, 649, 999
Tru1I TTAA 2 cut(s) 191, 1281
Tru9I TTAA 2 cut(s) 191, 1281
TscAI CASTG 2 cut(s) 468, 1131
TseFI GTSAC 5 cut(s) 115, 185, 676, 874, 1228
TseI GCWGC 4 cut(s) 7, 16, 956, 1308
Tsp45I GTSAC 5 cut(s) 115, 185, 676, 874, 1228
TspDTI ATGAA 5 cut(s) 395, 471, 662, 687, 1289
TspGWI ACGGA 2 cut(s) 273, 1089
TspMI CCCGGG 1 cut(s) 1099
TspRI CASTG 2 cut(s) 468, 1131
Vha464I CTTAAG 1 cut(s) 190
XapI RAATTY 1 cut(s) 883
XceI RCATGY 3 cut(s) 509, 808, 903
XmaI CCCGGG 1 cut(s) 1099
XmiI GTMKAC 1 cut(s) 330
XspI CTAG 1 cut(s) 1290
ZraI GACGTC 1 cut(s) 475
Zsp2I ATGCAT 2 cut(s) 740, 827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.