Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0011588

Physical Location & Seq

Genomic Coordinates Forward (+)

3453514 .. 3454505

Gene Structure 992 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGCATATATATGGGGCAAGAGGGAAACCAGTTGTGGCGAAGCAAGTTTTCGATGAGGTTGTGGCTCCTGACATCGTTTCATGGTCGGGTTTGGTTATTGTGCATACGAGAGCGCGGGAGTTGGAGTTTGCACGGCAGGTGCTTGATGAGATGCCTGAAAAGGAAGTGGTTTCTTGGACTGCTATGACCTCTACGTATTCCCAAGCAAAGTATTCGAAAGAAGCGCTTGATTTGTTTTGGGAGATGAATCGTGAGGGAGTGATGCCCGATAAAGTCACGATGGTGAGTGTAATCTCAGCTTGTGCAGATTCCGGAAATATGGAAACAGGGATATGCATCCACCAATATGTTGACGACAATGGGTTTTTGTGGATGTTGTCTCTTTGCAATGCCCTGATTGACATGTATGCGAAGTGTGGATGCATGGATCGAGCATGGCAAGTGTTTGATAAGATGAGCCGAAAGAGCTTGGTCACTTGGAATTCGATGATTTCACCATGCGCAAACTATGGCAATGTTGATGATGCGTTTGGTTTGTTTGAGTGCATGACTAATGCTGGTGTTGCACCGGATGGGGTCACATTTTTAGCCCTTTTAGTTGCGTATACACACAAGGGATTGGTAGACGAGGGTCGATCAGACTATTCGAAGGAATGCAAACAAACTATAGAATCGAGATTGATTAGCAGTATGCCAATTCCGGGCAACGATGTTGTTTGGGGAACACTGCTTGCAGCTTGCAGAACTTACGGGGATGCTGATATGGGCGAGAGGGTCGTGAATAGGCTGTTAGAGTTGAAACCAGATGAAGACGGGTACTACATTCTCCTTCGTGATATTTACGTCGCAGCCGGAAGGACAATGGAAGCAAATGCGATGAGGCAAAGCATGAAAGAGAAAATGCGATTAGGCAAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

307

Amino Acids

34.22

Weight (kDa)

5.08

Isoelectric Point (pI)

36.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	55 - 102	9.6e-09	PPR repeat family
PPR	PF01535	129 - 155	3.1e-06	PPR repeat
PPR_2	PF13041	129 - 156	1e-05	PPR repeat family
PPR_2	PF13041	156 - 200	2.9e-09	PPR repeat family
E_motif	PF20431	250 - 299	1.1e-08	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011588)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48040
malus_domestica	MD09G1054600.v1.1
prunus_persica	Prupe.3G263900_v2.0.a1
pyrus_communis	pycom111g04590 pycom17g04940 pycom17g04960 pycom17g05030
rosa_chinensis	RchiOBHm_Chr2g0167331
rosa_laevigata	RLG00000021709 RLG00000021730
rosa_multiflora	Rmu_co8271097.1_g000001 Rmu_sc0001840.1_g000011 Rmu_sc0014204.1_g000008
rosa_roxburghii	Rroxscaffold_2G00083590
rosa_rugosa	Rorug02G0529600
rosa_samantha	Rh2AG596600 Rh2BG608000 Rh2CG578800 Rh2DG619400
rosa_wichuraiana	Rw2G049650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	127
Acc16I	TGCGCA	1 cut(s)	502
Acc36I	ACCTGC	1 cut(s)	127
AccI	GTMKAC	2 cut(s)	605, 624
AccII	CGCG	1 cut(s)	115
AccIII	TCCGGA	1 cut(s)	311
AciI	CCGC	1 cut(s)	115
AclWI	GGATC	1 cut(s)	435
AcsI	RAATTY	1 cut(s)	481
AfaI	GTAC	1 cut(s)	818
AfeI	AGCGCT	1 cut(s)	225
AfiI	CCNNNNNNNGG	1 cut(s)	701
AflIII	ACRYGT	1 cut(s)	402
AgsI	TTSAA	1 cut(s)	799
AleI	CACNNNNGTG	1 cut(s)	281
AluBI	AGCT	3 cut(s)	299, 468, 737
AluI	AGCT	3 cut(s)	299, 468, 737
Alw26I	GTCTC	1 cut(s)	384
AlwI	GGATC	1 cut(s)	435
Aor13HI	TCCGGA	1 cut(s)	311
Aor51HI	AGCGCT	1 cut(s)	225
ApeKI	GCWGC	2 cut(s)	734, 848
ApoI	RAATTY	1 cut(s)	481
AspLEI	GCGC	3 cut(s)	115, 226, 503
AsuC2I	CCSGG	1 cut(s)	702
AsuHPI	GGTGA	2 cut(s)	295, 486
AsuII	TTCGAA	2 cut(s)	215, 647
BbsI	GAAGAC	1 cut(s)	816
BbvI	GCAGC	2 cut(s)	746, 860
BccI	CCATC	2 cut(s)	274, 566
BceAI	ACGGC	1 cut(s)	149
BcgI	CGANNNNNNTGC	2 cut(s)	195, 229
BcnI	CCSGG	1 cut(s)	702
BcoDI	GTCTC	1 cut(s)	384
BfmI	CTRYAG	1 cut(s)	666
BfoI	RGCGCY	1 cut(s)	227
BfuAI	ACCTGC	1 cut(s)	127
BisI	GCNGC	2 cut(s)	735, 849
BlsI	GCNGC	2 cut(s)	736, 850
Bme1390I	CCNGG	1 cut(s)	702
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	702
BmsI	GCATC	6 cut(s)	141, 252, 345, 410, 514, 745
BoxI	GACNNNNGTC	1 cut(s)	630
BpiI	GAAGAC	1 cut(s)	816
Bpu14I	TTCGAA	2 cut(s)	215, 647
BpuMI	CCSGG	1 cut(s)	702
BsaAI	YACGTR	1 cut(s)	195
BsaBI	GATNNNNATC	1 cut(s)	335
BsaWI	WCCGGW	2 cut(s)	311, 568
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	1 cut(s)	701
Bse1I	ACTGG	1 cut(s)	29
Bse3DI	GCAATG	2 cut(s)	394, 520
Bse8I	GATNNNNATC	1 cut(s)	335
BseAI	TCCGGA	1 cut(s)	311
BseGI	GGATG	5 cut(s)	336, 378, 425, 577, 760
BseJI	GATNNNNATC	1 cut(s)	335
BseLI	CCNNNNNNNGG	1 cut(s)	701
BseMI	GCAATG	2 cut(s)	394, 520
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	1 cut(s)	29
BseXI	GCAGC	2 cut(s)	746, 860
BsgI	GTGCAG	1 cut(s)	324
Bsh1236I	CGCG	1 cut(s)	115
BsiSI	CCGG	4 cut(s)	312, 569, 701, 852
BslI	CCNNNNNNNGG	1 cut(s)	701
BsmAI	GTCTC	1 cut(s)	384
BsmI	GAATGC	1 cut(s)	659
Bsp119I	TTCGAA	2 cut(s)	215, 647
Bsp13I	TCCGGA	1 cut(s)	311
Bsp143I	GATC	2 cut(s)	427, 635
BspACI	CCGC	1 cut(s)	115
BspCNI	CTCAG	1 cut(s)	308
BspEI	TCCGGA	1 cut(s)	311
BspFNI	CGCG	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	66
BspMI	ACCTGC	1 cut(s)	127
BspPI	GGATC	1 cut(s)	435
BspT104I	TTCGAA	2 cut(s)	215, 647
BsrDI	GCAATG	2 cut(s)	394, 520
BsrI	ACTGG	1 cut(s)	29
BssMI	GATC	2 cut(s)	427, 635
BssNAI	GTATAC	1 cut(s)	606
Bst1107I	GTATAC	1 cut(s)	606
BstBAI	YACGTR	1 cut(s)	195
BstBI	TTCGAA	2 cut(s)	215, 647
BstC8I	GCNNGC	2 cut(s)	732, 739
BstDEI	CTNAG	1 cut(s)	295
BstF5I	GGATG	5 cut(s)	336, 378, 425, 577, 760
BstFNI	CGCG	1 cut(s)	115
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	3 cut(s)	115, 226, 503
BstKTI	GATC	2 cut(s)	430, 638
BstMAI	GTCTC	1 cut(s)	384
BstMBI	GATC	2 cut(s)	427, 635
BstMWI	GCNNNNNNNGC	2 cut(s)	465, 563
BstNSI	RCATGY	1 cut(s)	406
BstPAI	GACNNNNGTC	1 cut(s)	630
BstSCI	CCNGG	1 cut(s)	700
BstSFI	CTRYAG	1 cut(s)	666
BstSNI	TACGTA	1 cut(s)	195
BstUI	CGCG	1 cut(s)	115
BstV1I	GCAGC	2 cut(s)	746, 860
BstV2I	GAAGAC	1 cut(s)	816
BstZ17I	GTATAC	1 cut(s)	606
BtgZI	GCGATG	1 cut(s)	890
BtsCI	GGATG	5 cut(s)	336, 378, 425, 577, 760
BtsI	GCAGTG	1 cut(s)	725
BtsIMutI	CAGTG	1 cut(s)	725
BveI	ACCTGC	1 cut(s)	127
Cac8I	GCNNGC	2 cut(s)	732, 739
CfoI	GCGC	3 cut(s)	115, 226, 503
Csp6I	GTAC	1 cut(s)	817
CviAII	CATG	8 cut(s)	81, 403, 424, 435, 498, 547, 889, 918
CviJI	RGCY	8 cut(s)	65, 299, 459, 468, 590, 737, 787, 851
CviKI_1	RGCY	8 cut(s)	65, 299, 459, 468, 590, 737, 787, 851
CviQI	GTAC	1 cut(s)	817
DdeI	CTNAG	1 cut(s)	295
DpnI	GATC	2 cut(s)	429, 637
DpnII	GATC	2 cut(s)	427, 635
Eco105I	TACGTA	1 cut(s)	195
Eco47III	AGCGCT	1 cut(s)	225
EcoRI	GAATTC	1 cut(s)	481
EcoT22I	ATGCAT	3 cut(s)	6, 338, 425
FaeI	CATG	8 cut(s)	84, 406, 427, 438, 501, 550, 892, 921
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FatI	CATG	8 cut(s)	80, 402, 423, 434, 497, 546, 888, 917
FauI	CCCGC	1 cut(s)	108
FblI	GTMKAC	2 cut(s)	605, 624
Fnu4HI	GCNGC	2 cut(s)	735, 849
FokI	GGATG	5 cut(s)	323, 385, 432, 584, 767
Fsp4HI	GCNGC	2 cut(s)	735, 849
FspI	TGCGCA	1 cut(s)	502
GlaI	GCGC	3 cut(s)	114, 225, 502
GluI	GCNGC	2 cut(s)	735, 849
HaeII	RGCGCY	1 cut(s)	227
HapII	CCGG	4 cut(s)	312, 569, 701, 852
HhaI	GCGC	3 cut(s)	115, 226, 503
Hin1II	CATG	8 cut(s)	84, 406, 427, 438, 501, 550, 892, 921
Hin6I	GCGC	3 cut(s)	113, 224, 501
HinP1I	GCGC	3 cut(s)	113, 224, 501
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HinfI	GANTC	3 cut(s)	247, 308, 671
HpaII	CCGG	4 cut(s)	312, 569, 701, 852
HphI	GGTGA	2 cut(s)	295, 486
Hpy166II	GTNNAC	3 cut(s)	352, 606, 625
Hpy188I	TCNGA	1 cut(s)	640
Hpy188III	TCNNGA	7 cut(s)	68, 251, 277, 312, 675, 778, 833
Hpy8I	GTNNAC	3 cut(s)	352, 606, 625
Hpy99I	CGWCG	1 cut(s)	848
HpyAV	CCTTC	3 cut(s)	643, 839, 849
HpyCH4IV	ACGT	2 cut(s)	194, 843
HpyF10VI	GCNNNNNNNGC	2 cut(s)	465, 563
HpyF3I	CTNAG	1 cut(s)	295
HpySE526I	ACGT	2 cut(s)	194, 843
Hsp92II	CATG	8 cut(s)	84, 406, 427, 438, 501, 550, 892, 921
HspAI	GCGC	3 cut(s)	113, 224, 501
Kpn2I	TCCGGA	1 cut(s)	311
Kzo9I	GATC	2 cut(s)	427, 635
LmnI	GCTCC	1 cut(s)	70
Lsp1109I	GCAGC	2 cut(s)	746, 860
LweI	GCATC	6 cut(s)	141, 252, 345, 410, 514, 745
MaeII	ACGT	2 cut(s)	194, 843
MaeIII	GTNAC	3 cut(s)	274, 472, 577
MalI	GATC	2 cut(s)	429, 637
MboI	GATC	2 cut(s)	427, 635
MboII	GAAGA	1 cut(s)	821
MluCI	AATT	2 cut(s)	481, 696
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	7 cut(s)	14, 49, 199, 247, 622, 765, 873
Mph1103I	ATGCAT	3 cut(s)	6, 338, 425
MroI	TCCGGA	1 cut(s)	311
MslI	CAYNNNNRTG	3 cut(s)	9, 281, 345
MspI	CCGG	4 cut(s)	312, 569, 701, 852
MspR9I	CCNGG	1 cut(s)	702
Mva1269I	GAATGC	1 cut(s)	659
MvnI	CGCG	1 cut(s)	115
MwoI	GCNNNNNNNGC	2 cut(s)	465, 563
NciI	CCSGG	1 cut(s)	702
NdeII	GATC	2 cut(s)	427, 635
NlaIII	CATG	8 cut(s)	84, 406, 427, 438, 501, 550, 892, 921
NlaIV	GGNNCC	1 cut(s)	66
NmuCI	GTSAC	3 cut(s)	274, 472, 577
NsbI	TGCGCA	1 cut(s)	502
NsiI	ATGCAT	3 cut(s)	6, 338, 425
NspI	RCATGY	1 cut(s)	406
NspV	TTCGAA	2 cut(s)	215, 647
OliI	CACNNNNGTG	1 cut(s)	281
PaqCI	CACCTGC	1 cut(s)	127
PciI	ACATGT	1 cut(s)	402
PctI	GAATGC	1 cut(s)	659
PfeI	GAWTC	3 cut(s)	247, 308, 671
PkrI	GCNGC	2 cut(s)	736, 850
Ppu21I	YACGTR	1 cut(s)	195
PscI	ACATGT	1 cut(s)	402
PshAI	GACNNNNGTC	1 cut(s)	630
PspN4I	GGNNCC	1 cut(s)	66
RsaI	GTAC	1 cut(s)	818
RsaNI	GTAC	1 cut(s)	817
RseI	CAYNNNNRTG	3 cut(s)	9, 281, 345
SatI	GCNGC	2 cut(s)	735, 849
Sau3AI	GATC	2 cut(s)	427, 635
ScrFI	CCNGG	1 cut(s)	702
SetI	ASST	8 cut(s)	60, 141, 191, 197, 301, 470, 739, 846
SfaNI	GCATC	6 cut(s)	141, 252, 345, 410, 514, 745
SfcI	CTRYAG	1 cut(s)	666
SfuI	TTCGAA	2 cut(s)	215, 647
SmiMI	CAYNNNNRTG	3 cut(s)	9, 281, 345
SnaBI	TACGTA	1 cut(s)	195
Sse9I	AATT	2 cut(s)	481, 696
SsiI	CCGC	1 cut(s)	115
StyD4I	CCNGG	1 cut(s)	700
TaiI	ACGT	2 cut(s)	197, 846
TaqI	TCGA	7 cut(s)	51, 215, 430, 485, 634, 647, 674
TasI	AATT	2 cut(s)	481, 696
TfiI	GAWTC	3 cut(s)	247, 308, 671
TscAI	CASTG	1 cut(s)	732
TseFI	GTSAC	3 cut(s)	274, 472, 577
TseI	GCWGC	2 cut(s)	734, 848
Tsp45I	GTSAC	3 cut(s)	274, 472, 577
TspDTI	ATGAA	4 cut(s)	69, 260, 822, 905
TspRI	CASTG	1 cut(s)	732
XapI	RAATTY	1 cut(s)	481
XceI	RCATGY	1 cut(s)	406
XmiI	GTMKAC	2 cut(s)	605, 624
Zsp2I	ATGCAT	3 cut(s)	6, 338, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.