pycom17g07250

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0011981
Physical Location & Seq
Forward (+)
5191686 .. 5193772
2087 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1194 bp
ATGAGAGCAGTTCGCCTACCACGATTTGCACGCCCTCTCACCATATTGGTGGAGAAGCAAAACTTGGCTTTGATACCACTTAAGGCAGGGAAGCCAACAGAAAGAGTGGAGAACAAATACGATTGTAGCTCTGGGAATCACTCAACCAGGCAAGAAACTGTGGGGCTCACTCAACCAGAAAATAGAACGAGCAAAGTTAAGAGCTCTTCTAATCAAGCGCTTACGAAGATAAGTACTTCCTACAAAAGCAATCCCATACGGAGCCTTCCAAACAAGCTCTCATGGAATAGAACCACTACTTTTCATGTTAACCAAACTCCTCAAAAGGATGTGCCAACTAACAAATGTTCCCCATTTGCCTTCTTGCATTCACCAACTCATCTATTAAAATGTTATAAAACACAAGACACAATCATGATTAACAAACCCCACAAATCTCCAATTCAAACCATGTCTAAAACGAAAGCCTCCTCCAAGAAGCAACGGAGAATATGCAAGGCATTGTGCTGCAGCAGCTGCCGGCTTAGCGTGTCTTCGTCTAGCTCGGAGGAAGTAGCCAGCTCTAGTTCCGATAGGTACCCTTCAATATCAAGCCTATCGCATGCCATGGTTCAAGAGAGACTCGACCAGATGATCAGGGAAGGGCAGGAGGGCTCGAGGCACGTTGATCATCGCAGAAGAAAGCAGCGAGCTGGTGATGATCATGATCAACTTCAAGCAGGAGGAGGGACTAAATTTGTTGTAATGGTTGCGATGGAGATGTGTTCTTATGATCCGAGGGAGGATTTCAGGGAGTCCATGGCGGCGATGATAGTGGCAAACCGAATACAAGAGCCTAAAGATCTTCGTAGCCTCTTGAATTATTATGTTTCGATGAATTCAGATGAGTATCGTGGGCTTATACTCGAGGTGTTTCATGAAGTTTGCTCTGATTTTTTTCTTATCCAACTATGGAAAAGCAGCCTTGAACTTGATTTAAATTTAAGACAAAAACAAAATTGTGACATTATATTGGGGAGAAAAGAAGACGAACCCATATGTAATATTCAAATGATAACTACAAATCTAACAATAACTTATGTTGCAAAATTTTTGAATCTGCACCACATATTCTGCCGCGACGAAAGTTTATGTGATTCTTGCCCCTTATTGATCTCCTCTTGGGAAGGCCAAGAAAGCGGAGTAAGGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ovate

Protein Analysis

398

Amino Acids

45.2

Weight (kDa)

9.17

Isoelectric Point (pI)

53.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 256 - 312 6.5e-20 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011981)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04025
fragaria_vesca FvH4_3g01350
malus_domestica MD05G1352900.v1.1 MD10G1327500.v1.1
prunus_persica Prupe.4G014500_v2.0.a1
pyrus_communis pycom05g32020 pycom05g32100 pycom17g07250
rosa_chinensis RchiOBHm_Chr5g0001971
rosa_laevigata RLG00000030985
rosa_multiflora Rmu_sc0000378.1_g000017 Rmu_sc0006008.1_g000006
rosa_roxburghii Rroxscaffold_1G00071360 Rroxscaffold_1G00074380
rosa_rugosa Rorug04G0394100
rosa_samantha Rh5BG018800 Rh5CG016500 Rh5DG017100
rosa_wichuraiana Rw5G001490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 396
Acc65I GGTACC 1 cut(s) 576
AccB1I GGYRCC 1 cut(s) 576
AccII CGCG 1 cut(s) 1119
AciI CCGC 3 cut(s) 803, 1117, 1179
AclWI GGATC 1 cut(s) 767
AcsI RAATTY 4 cut(s) 734, 877, 979, 1088
AfaI GTAC 2 cut(s) 235, 578
AfeI AGCGCT 1 cut(s) 219
AflII CTTAAG 1 cut(s) 80
AgsI TTSAA 8 cut(s) 446, 585, 614, 716, 859, 968, 1049, 1096
AjnI CCWGG 1 cut(s) 146
AjuI GAANNNNNNNTTGG 2 cut(s) 47, 79
AluBI AGCT 7 cut(s) 129, 204, 277, 516, 543, 561, 692
AluI AGCT 7 cut(s) 129, 204, 277, 516, 543, 561, 692
Alw21I GWGCWC 1 cut(s) 206
Alw26I GTCTC 1 cut(s) 613
AlwI GGATC 1 cut(s) 767
AlwNI CAGNNNCTG 1 cut(s) 516
Ama87I CYCGRG 2 cut(s) 655, 905
Aor51HI AGCGCT 1 cut(s) 219
AoxI GGCC 1 cut(s) 1168
ApeKI GCWGC 6 cut(s) 507, 510, 513, 516, 685, 960
ApoI RAATTY 4 cut(s) 734, 877, 979, 1088
Asp718I GGTACC 1 cut(s) 576
AspLEI GCGC 1 cut(s) 220
AsuHPI GGTGA 3 cut(s) 31, 363, 707
AvaI CYCGRG 2 cut(s) 655, 905
BanI GGYRCC 1 cut(s) 576
BanII GRGCYC 3 cut(s) 168, 206, 656
BbsI GAAGAC 2 cut(s) 525, 1032
Bbv12I GWGCWC 1 cut(s) 206
BbvI GCAGC 6 cut(s) 494, 503, 522, 525, 697, 972
BccI CCATC 1 cut(s) 748
BciT130I CCWGG 1 cut(s) 148
BclI TGATCA 4 cut(s) 633, 667, 700, 706
BcoDI GTCTC 1 cut(s) 613
BfaI CTAG 2 cut(s) 540, 564
BfmI CTRYAG 1 cut(s) 508
BfoI RGCGCY 1 cut(s) 221
BfrI CTTAAG 1 cut(s) 80
BglII AGATCT 1 cut(s) 841
BisI GCNGC 8 cut(s) 508, 511, 514, 517, 686, 804, 961, 1117
BlpI GCTNAGC 1 cut(s) 524
BlsI GCNGC 8 cut(s) 509, 512, 515, 518, 687, 805, 962, 1118
BmcAI AGTACT 1 cut(s) 235
Bme1390I CCNGG 1 cut(s) 148
BmeT110I CYCGRG 2 cut(s) 655, 905
BmiI GGNNCC 2 cut(s) 263, 578
BmrFI CCNGG 1 cut(s) 148
BpiI GAAGAC 2 cut(s) 525, 1032
Bpu1102I GCTNAGC 1 cut(s) 524
BsaBI GATNNNNATC 2 cut(s) 705, 888
BsaJI CCNNGG 3 cut(s) 606, 776, 798
Bse118I RCCGGY 1 cut(s) 519
Bse8I GATNNNNATC 2 cut(s) 705, 888
BseBI CCWGG 1 cut(s) 148
BseDI CCNNGG 3 cut(s) 606, 776, 798
BseGI GGATG 1 cut(s) 334
BseJI GATNNNNATC 2 cut(s) 705, 888
BseRI GAGGAG 4 cut(s) 309, 460, 738, 1147
BseXI GCAGC 6 cut(s) 494, 503, 522, 525, 697, 972
BsgI GTGCAG 1 cut(s) 1085
Bsh1236I CGCG 1 cut(s) 1119
BshFI GGCC 1 cut(s) 1170
BshNI GGYRCC 1 cut(s) 576
BsiHKAI GWGCWC 1 cut(s) 206
BsiHKCI CYCGRG 2 cut(s) 655, 905
BsiSI CCGG 1 cut(s) 520
BslFI GGGAC 1 cut(s) 742
BsmAI GTCTC 1 cut(s) 613
BsmFI GGGAC 1 cut(s) 742
BsmI GAATGC 1 cut(s) 367
BsnI GGCC 1 cut(s) 1170
BsoBI CYCGRG 2 cut(s) 655, 905
Bsp1286I GDGCHC 3 cut(s) 168, 206, 656
Bsp143I GATC 7 cut(s) 633, 667, 700, 706, 772, 841, 1152
Bsp1720I GCTNAGC 1 cut(s) 524
Bsp19I CCATGG 2 cut(s) 606, 798
BspACI CCGC 3 cut(s) 803, 1117, 1179
BspANI GGCC 1 cut(s) 1170
BspFNI CGCG 1 cut(s) 1119
BspHI TCATGA 3 cut(s) 414, 703, 916
BspLI GGNNCC 2 cut(s) 263, 578
BspMAI CTGCAG 1 cut(s) 512
BspPI GGATC 1 cut(s) 767
BspQI GCTCTTC 1 cut(s) 211
BspT107I GGYRCC 1 cut(s) 576
BspTI CTTAAG 1 cut(s) 80
BsrFI RCCGGY 1 cut(s) 519
BssAI RCCGGY 1 cut(s) 519
BssECI CCNNGG 3 cut(s) 606, 776, 798
BssMI GATC 7 cut(s) 633, 667, 700, 706, 772, 841, 1152
BssT1I CCWWGG 2 cut(s) 606, 798
Bst2UI CCWGG 1 cut(s) 148
Bst4CI ACNGT 1 cut(s) 160
Bst6I CTCTTC 1 cut(s) 211
BstAFI CTTAAG 1 cut(s) 80
BstAPI GCANNNNNTGC 1 cut(s) 516
BstC8I GCNNGC 5 cut(s) 31, 521, 559, 603, 690
BstDEI CTNAG 1 cut(s) 524
BstDSI CCRYGG 2 cut(s) 606, 798
BstF5I GGATG 1 cut(s) 334
BstFNI CGCG 1 cut(s) 1119
BstH2I RGCGCY 1 cut(s) 221
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 7 cut(s) 636, 670, 703, 709, 775, 844, 1155
BstMAI GTCTC 1 cut(s) 613
BstMBI GATC 7 cut(s) 633, 667, 700, 706, 772, 841, 1152
BstMWI GCNNNNNNNGC 4 cut(s) 513, 516, 525, 1176
BstNI CCWGG 1 cut(s) 148
BstNSI RCATGY 1 cut(s) 605
BstSCI CCNGG 1 cut(s) 146
BstSFI CTRYAG 1 cut(s) 508
BstUI CGCG 1 cut(s) 1119
BstV1I GCAGC 6 cut(s) 494, 503, 522, 525, 697, 972
BstV2I GAAGAC 2 cut(s) 525, 1032
BstX2I RGATCY 1 cut(s) 841
BstXI CCANNNNNNTGG 1 cut(s) 49
BstYI RGATCY 1 cut(s) 841
BsuRI GGCC 1 cut(s) 1170
BtgI CCRYGG 2 cut(s) 606, 798
BtgZI GCGATG 3 cut(s) 656, 767, 821
BtsCI GGATG 1 cut(s) 334
Cac8I GCNNGC 5 cut(s) 31, 521, 559, 603, 690
CaiI CAGNNNCTG 1 cut(s) 516
CciI TCATGA 3 cut(s) 414, 703, 916
CfoI GCGC 1 cut(s) 220
Cfr10I RCCGGY 1 cut(s) 519
Csp6I GTAC 2 cut(s) 234, 577
CviAII CATG 9 cut(s) 282, 305, 415, 451, 602, 607, 704, 799, 917
CviQI GTAC 2 cut(s) 234, 577
DdeI CTNAG 1 cut(s) 524
DpnI GATC 7 cut(s) 635, 669, 702, 708, 774, 843, 1154
DpnII GATC 7 cut(s) 633, 667, 700, 706, 772, 841, 1152
DraI TTTAAA 1 cut(s) 978
Eam1104I CTCTTC 1 cut(s) 211
EarI CTCTTC 1 cut(s) 211
Ecl136II GAGCTC 1 cut(s) 204
Eco130I CCWWGG 2 cut(s) 606, 798
Eco24I GRGCYC 3 cut(s) 168, 206, 656
Eco47III AGCGCT 1 cut(s) 219
Eco53kI GAGCTC 1 cut(s) 204
Eco88I CYCGRG 2 cut(s) 655, 905
EcoICRI GAGCTC 1 cut(s) 204
EcoRI GAATTC 1 cut(s) 877
EcoRII CCWGG 1 cut(s) 146
EcoT14I CCWWGG 2 cut(s) 606, 798
EcoT38I GRGCYC 3 cut(s) 168, 206, 656
ErhI CCWWGG 2 cut(s) 606, 798
FaeI CATG 9 cut(s) 285, 308, 418, 454, 605, 610, 707, 802, 920
FalI AAGNNNNNCTT 2 cut(s) 47, 79
FaqI GGGAC 1 cut(s) 742
FatI CATG 9 cut(s) 281, 304, 414, 450, 601, 606, 703, 798, 916
FauNDI CATATG 1 cut(s) 1037
FbaI TGATCA 4 cut(s) 633, 667, 700, 706
Fnu4HI GCNGC 8 cut(s) 508, 511, 514, 517, 686, 804, 961, 1117
FokI GGATG 1 cut(s) 341
FriOI GRGCYC 3 cut(s) 168, 206, 656
Fsp4HI GCNGC 8 cut(s) 508, 511, 514, 517, 686, 804, 961, 1117
FspBI CTAG 2 cut(s) 540, 564
GlaI GCGC 1 cut(s) 219
GluI GCNGC 8 cut(s) 508, 511, 514, 517, 686, 804, 961, 1117
HaeII RGCGCY 1 cut(s) 221
HaeIII GGCC 1 cut(s) 1170
HapII CCGG 1 cut(s) 520
HhaI GCGC 1 cut(s) 220
Hin1II CATG 9 cut(s) 285, 308, 418, 454, 605, 610, 707, 802, 920
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HinfI GANTC 5 cut(s) 136, 621, 794, 1096, 1136
HpaI GTTAAC 1 cut(s) 310
HpaII CCGG 1 cut(s) 520
HphI GGTGA 3 cut(s) 31, 363, 707
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 5 cut(s) 547, 571, 777, 883, 931
Hpy188III TCNNGA 5 cut(s) 415, 614, 704, 856, 917
Hpy8I GTNNAC 1 cut(s) 310
Hpy99I CGWCG 1 cut(s) 1124
HpyAV CCTTC 5 cut(s) 275, 370, 591, 635, 1160
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4IV ACGT 1 cut(s) 663
HpyCH4V TGCA 6 cut(s) 29, 367, 495, 510, 1085, 1102
HpyF10VI GCNNNNNNNGC 4 cut(s) 513, 516, 525, 1176
HpyF3I CTNAG 1 cut(s) 524
HpySE526I ACGT 1 cut(s) 663
Hsp92II CATG 9 cut(s) 285, 308, 418, 454, 605, 610, 707, 802, 920
HspAI GCGC 1 cut(s) 218
KpnI GGTACC 1 cut(s) 580
KroI GCCGGC 1 cut(s) 519
KroNI GCCGGC 1 cut(s) 521
Ksp22I TGATCA 4 cut(s) 633, 667, 700, 706
KspAI GTTAAC 1 cut(s) 310
Kzo9I GATC 7 cut(s) 633, 667, 700, 706, 772, 841, 1152
LguI GCTCTTC 1 cut(s) 211
LmnI GCTCC 1 cut(s) 261
Lsp1109I GCAGC 6 cut(s) 494, 503, 522, 525, 697, 972
MaeI CTAG 2 cut(s) 540, 564
MaeII ACGT 1 cut(s) 663
MaeIII GTNAC 1 cut(s) 1001
MalI GATC 7 cut(s) 635, 669, 702, 708, 774, 843, 1154
MboI GATC 7 cut(s) 633, 667, 700, 706, 772, 841, 1152
MboII GAAGA 6 cut(s) 198, 238, 525, 690, 836, 1037
MflI RGATCY 1 cut(s) 841
MhlI GDGCHC 3 cut(s) 168, 206, 656
MluCI AATT 7 cut(s) 441, 734, 859, 877, 979, 997, 1088
MlyI GAGTC 2 cut(s) 615, 803
MmeI TCCRAC 1 cut(s) 970
MroNI GCCGGC 1 cut(s) 519
MseI TTAA 7 cut(s) 81, 198, 309, 386, 420, 977, 983
MslI CAYNNNNRTG 2 cut(s) 47, 413
MspA1I CMGCKG 1 cut(s) 516
MspCI CTTAAG 1 cut(s) 80
MspI CCGG 1 cut(s) 520
MspR9I CCNGG 1 cut(s) 148
Mva1269I GAATGC 1 cut(s) 367
MvaI CCWGG 1 cut(s) 148
MvnI CGCG 1 cut(s) 1119
MwoI GCNNNNNNNGC 4 cut(s) 513, 516, 525, 1176
NaeI GCCGGC 1 cut(s) 521
NcoI CCATGG 2 cut(s) 606, 798
NdeI CATATG 1 cut(s) 1037
NdeII GATC 7 cut(s) 633, 667, 700, 706, 772, 841, 1152
NgoMIV GCCGGC 1 cut(s) 519
NlaIII CATG 9 cut(s) 285, 308, 418, 454, 605, 610, 707, 802, 920
NlaIV GGNNCC 2 cut(s) 263, 578
NmuCI GTSAC 1 cut(s) 1001
NspI RCATGY 1 cut(s) 605
PaeI GCATGC 1 cut(s) 605
PaeR7I CTCGAG 2 cut(s) 655, 905
PagI TCATGA 3 cut(s) 414, 703, 916
PciSI GCTCTTC 1 cut(s) 211
PcsI WCGNNNNNNNCGW 1 cut(s) 19
PctI GAATGC 1 cut(s) 367
PdiI GCCGGC 1 cut(s) 521
PfeI GAWTC 3 cut(s) 136, 1096, 1136
PkrI GCNGC 8 cut(s) 509, 512, 515, 518, 687, 805, 962, 1118
PleI GAGTC 2 cut(s) 615, 802
PpsI GAGTC 2 cut(s) 615, 802
PsiI TTATAA 1 cut(s) 396
Psp124BI GAGCTC 1 cut(s) 206
Psp6I CCWGG 1 cut(s) 146
PspGI CCWGG 1 cut(s) 146
PspN4I GGNNCC 2 cut(s) 263, 578
PspXI VCTCGAGB 2 cut(s) 655, 905
PstI CTGCAG 1 cut(s) 512
PstNI CAGNNNCTG 1 cut(s) 516
PsuI RGATCY 1 cut(s) 841
PvuII CAGCTG 1 cut(s) 516
RsaI GTAC 2 cut(s) 235, 578
RsaNI GTAC 2 cut(s) 234, 577
RseI CAYNNNNRTG 2 cut(s) 47, 413
SacI GAGCTC 1 cut(s) 206
SapI GCTCTTC 1 cut(s) 211
SaqAI TTAA 7 cut(s) 81, 198, 309, 386, 420, 977, 983
SatI GCNGC 8 cut(s) 508, 511, 514, 517, 686, 804, 961, 1117
Sau3AI GATC 7 cut(s) 633, 667, 700, 706, 772, 841, 1152
ScaI AGTACT 1 cut(s) 235
SchI GAGTC 2 cut(s) 615, 803
ScrFI CCNGG 1 cut(s) 148
SduI GDGCHC 3 cut(s) 168, 206, 656
SfcI CTRYAG 1 cut(s) 508
Sfr274I CTCGAG 2 cut(s) 655, 905
SlaI CTCGAG 2 cut(s) 655, 905
SmiI ATTTAAAT 1 cut(s) 978
SmiMI CAYNNNNRTG 2 cut(s) 47, 413
SmlI CTYRAG 3 cut(s) 80, 655, 905
SmoI CTYRAG 3 cut(s) 80, 655, 905
SphI GCATGC 1 cut(s) 605
Sse9I AATT 7 cut(s) 441, 734, 859, 877, 979, 997, 1088
SsiI CCGC 3 cut(s) 803, 1117, 1179
SspI AATATT 1 cut(s) 1045
SspMI CTAG 2 cut(s) 540, 564
SstI GAGCTC 1 cut(s) 206
StyD4I CCNGG 1 cut(s) 146
StyI CCWWGG 2 cut(s) 606, 798
SwaI ATTTAAAT 1 cut(s) 978
TaaI ACNGT 1 cut(s) 160
TaiI ACGT 1 cut(s) 666
TaqI TCGA 4 cut(s) 624, 656, 872, 906
TasI AATT 7 cut(s) 441, 734, 859, 877, 979, 997, 1088
TatI WGTACW 1 cut(s) 233
TauI GCSGC 2 cut(s) 806, 1119
TfiI GAWTC 3 cut(s) 136, 1096, 1136
Tru1I TTAA 7 cut(s) 81, 198, 309, 386, 420, 977, 983
Tru9I TTAA 7 cut(s) 81, 198, 309, 386, 420, 977, 983
TseFI GTSAC 1 cut(s) 1001
TseI GCWGC 6 cut(s) 507, 510, 513, 516, 685, 960
Tsp45I GTSAC 1 cut(s) 1001
TspDTI ATGAA 4 cut(s) 293, 890, 905, 933
TspGWI ACGGA 2 cut(s) 274, 499
Vha464I CTTAAG 1 cut(s) 80
XapI RAATTY 4 cut(s) 734, 877, 979, 1088
XceI RCATGY 1 cut(s) 605
XhoI CTCGAG 2 cut(s) 655, 905
XspI CTAG 2 cut(s) 540, 564
ZrmI AGTACT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.