pycom17g09060

traB domain-containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0011100
Physical Location & Seq
Forward (+)
6773426 .. 6776101
2676 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1038 bp
ATGGATGCGGAATCACCCTTGCCCAACCCGGCGGCATCCGAAAACTTTGTCCACGTCGGGAACCCTACGATTGAGGACTTGTCCGATAGCATCGTCGGTGTCGATGCGCCGAGGGACGAGTACGACGACAATGTTTCGACGACCGCCGAGGCTGAGAGTTCCCAACAGAGGAGGTTTCTTCCTGAGGAGCTGTCGAGGAGCGTGGTGGTGCTCACTTGTGAGTCCACGGCTGAGGGCGGCGTTTGCGACGTGCACCTGGTTGGAACGGCTCATGTTTCGGTGGAATCGTGCAGAGAAGTTGAAGCAGTGATCAGCTATTTGAAACCAGAGGTTGTGTTCTTGGAGTTATGCTCGAGTCGAGTGACTGCACTCACCCCTCAGAATTTGAAGGTACCGACAATGGGAGAAATGATCGAAATGTGGAAGAAAAAGAATAATGCCTTTGGGATTGTTTACAGCTGGTTCCTTGCCAAGGTTTCAAGTAGGCTTGAGGTGTTTCCCGGTGCTGAGTTTCGTGTAGCATATGAAGAAGCAATGAAGTATGGCGGTAGGGTGAGACTTGGTGATCGCCCAGTGCAGATTACAATACGAAGGACATGGGCAAAGATGCCACTTTGGCATAAGATAAAACTGCTGTATTCCTTGCTTTTTCAAGCAGTCTTTCTACCAAGCCCTGATTCTCTTAATAAAATGTTAAAGGAAATGGATGATGTTGACATGCTGACTCTCGTGATTCAAGAGATGAGCAAGGAGTACCCAACTCTAATGGAAACACTCGTACATGAACGAGATCAGTACATGTCATCAACATTACTGAGAATTGCGAGCGAGAATCGTTCAGTAGTTGCAGTAGTGGGAAAGGGGCACCTCCAAGGAATTAAGAAGCATTGGCAGCAGCCTGTTGTGGTGAAGGATCTTATGGTAATTCCAACAGAAAGGTCCCTTGTTTCCACCCGGAGAATCGTTAAATCTATGGGTGTGGCGGTGATTGGGGCGGCCATAGTATCAGGCATCTATCTTGCATCCAAGAGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TraB

Protein Analysis

346

Amino Acids

38.56

Weight (kDa)

6.22

Isoelectric Point (pI)

49.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TraB_PrgY_gumN PF01963 80 - 299 1.2e-23 TraB/PrgY/gumN family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011100)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05270 AT2G32340 AT2G32340
fragaria_vesca FvH4_6g43520 FvH4_6g43520
malus_domestica MD09G1105400.v1.1 MD17G1093000.v1.1
prunus_persica Prupe.3G220000_v2.0.a1
pyrus_communis pycom09g02840 pycom17g09060
rosa_chinensis RchiOBHm_Chr2g0160041
rosa_laevigata RLG00000021193
rosa_multiflora Rmu_sc0002023.1_g000016
rosa_roxburghii Rroxscaffold_2G00090070
rosa_rugosa Rorug02G0479900
rosa_samantha Rh2AG546500 Rh2BG559900 Rh2CG529900 Rh2DG568600
rosa_wichuraiana Rw2G045190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 391
AccB1I GGYRCC 2 cut(s) 391, 864
AciI CCGC 7 cut(s) 8, 32, 144, 237, 546, 983, 995
AclWI GGATC 1 cut(s) 921
AcoI YGGCCR 1 cut(s) 996
AcsI RAATTY 1 cut(s) 382
AfaI GTAC 5 cut(s) 122, 393, 755, 780, 797
AfiI CCNNNNNNNGG 3 cut(s) 168, 401, 472
AflIII ACRYGT 1 cut(s) 798
AgsI TTSAA 6 cut(s) 302, 322, 388, 480, 653, 737
AjiI CACGTC 2 cut(s) 55, 250
AjnI CCWGG 1 cut(s) 255
AjuI GAANNNNNNNTTGG 2 cut(s) 661, 693
AluBI AGCT 3 cut(s) 190, 315, 459
AluI AGCT 3 cut(s) 190, 315, 459
Alw21I GWGCWC 2 cut(s) 213, 255
Alw26I GTCTC 1 cut(s) 550
Alw44I GTGCAC 1 cut(s) 251
AlwI GGATC 1 cut(s) 921
Ama87I CYCGRG 1 cut(s) 352
AoxI GGCC 1 cut(s) 996
ApaLI GTGCAC 1 cut(s) 251
ApeKI GCWGC 2 cut(s) 892, 895
ApoI RAATTY 1 cut(s) 382
ArsI GACNNNNNNTTYG 2 cut(s) 33, 65
Asp718I GGTACC 1 cut(s) 391
AspLEI GCGC 1 cut(s) 109
AspS9I GGNCC 1 cut(s) 939
AsuC2I CCSGG 3 cut(s) 29, 501, 955
AsuHPI GGTGA 6 cut(s) 6, 364, 565, 575, 919, 997
AvaI CYCGRG 1 cut(s) 352
AvaII GGWCC 1 cut(s) 939
AxyI CCTNAGG 1 cut(s) 183
BaeGI GKGCMC 2 cut(s) 255, 867
BanI GGYRCC 2 cut(s) 391, 864
BauI CACGAG 1 cut(s) 728
Bbv12I GWGCWC 2 cut(s) 213, 255
BbvCI CCTCAGC 1 cut(s) 231
BbvI GCAGC 2 cut(s) 904, 907
BceAI ACGGC 2 cut(s) 243, 282
BciT130I CCWGG 1 cut(s) 257
BclI TGATCA 1 cut(s) 309
BcnI CCSGG 3 cut(s) 29, 501, 955
BcoDI GTCTC 1 cut(s) 550
BglI GCCNNNNNGGC 1 cut(s) 616
BisI GCNGC 5 cut(s) 33, 238, 893, 896, 996
BlsI GCNGC 5 cut(s) 34, 239, 894, 897, 997
Bme1390I CCNGG 4 cut(s) 29, 257, 501, 955
Bme18I GGWCC 1 cut(s) 939
BmeT110I CYCGRG 1 cut(s) 352
BmgBI CACGTC 2 cut(s) 55, 250
BmgT120I GGNCC 1 cut(s) 939
BmiI GGNNCC 5 cut(s) 62, 393, 464, 866, 941
BmrFI CCNGG 4 cut(s) 29, 257, 501, 955
BmrI ACTGGG 1 cut(s) 566
BmsI GCATC 6 cut(s) 44, 94, 99, 597, 1020, 1031
BmuI ACTGGG 1 cut(s) 566
BplI GAGNNNNNCTC 2 cut(s) 335, 367
Bpu10I CCTNAGC 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 509
BpuMI CCSGG 3 cut(s) 29, 501, 955
BsaJI CCNNGG 5 cut(s) 110, 147, 225, 471, 871
Bsc4I CCNNNNNNNGG 3 cut(s) 168, 401, 472
Bse1I ACTGG 1 cut(s) 572
Bse21I CCTNAGG 1 cut(s) 183
Bse3DI GCAATG 1 cut(s) 540
BseBI CCWGG 1 cut(s) 257
BseDI CCNNGG 5 cut(s) 110, 147, 225, 471, 871
BseGI GGATG 4 cut(s) 10, 35, 712, 1022
BseLI CCNNNNNNNGG 3 cut(s) 168, 401, 472
BseMI GCAATG 1 cut(s) 540
BseMII CTCAG 6 cut(s) 144, 174, 222, 392, 498, 806
BseNI ACTGG 1 cut(s) 572
BseRI GAGGAG 3 cut(s) 184, 200, 211
BseSI GKGCMC 2 cut(s) 255, 867
BseXI GCAGC 2 cut(s) 904, 907
BsgI GTGCAG 3 cut(s) 310, 351, 596
Bsh1285I CGRYCG 1 cut(s) 144
BshFI GGCC 1 cut(s) 998
BshNI GGYRCC 2 cut(s) 391, 864
BsiEI CGRYCG 1 cut(s) 144
BsiHKAI GWGCWC 2 cut(s) 213, 255
BsiHKCI CYCGRG 1 cut(s) 352
BsiSI CCGG 3 cut(s) 29, 501, 955
BslFI GGGAC 2 cut(s) 128, 925
BslI CCNNNNNNNGG 3 cut(s) 168, 401, 472
BsmAI GTCTC 1 cut(s) 550
BsmFI GGGAC 2 cut(s) 128, 925
BsnI GGCC 1 cut(s) 998
BsoBI CYCGRG 1 cut(s) 352
Bsp1286I GDGCHC 3 cut(s) 213, 255, 867
Bsp143I GATC 5 cut(s) 309, 411, 565, 790, 913
BspACI CCGC 7 cut(s) 8, 32, 144, 237, 546, 983, 995
BspANI GGCC 1 cut(s) 998
BspCNI CTCAG 6 cut(s) 145, 175, 223, 391, 499, 807
BspLI GGNNCC 5 cut(s) 62, 393, 464, 866, 941
BspPI GGATC 1 cut(s) 921
BspT107I GGYRCC 2 cut(s) 391, 864
BsrDI GCAATG 1 cut(s) 540
BsrI ACTGG 1 cut(s) 572
BssECI CCNNGG 5 cut(s) 110, 147, 225, 471, 871
BssMI GATC 5 cut(s) 309, 411, 565, 790, 913
BssSI CACGAG 1 cut(s) 728
BssT1I CCWWGG 2 cut(s) 471, 871
Bst2BI CACGAG 1 cut(s) 728
Bst2UI CCWGG 1 cut(s) 257
BstC8I GCNNGC 1 cut(s) 826
BstDEI CTNAG 6 cut(s) 153, 183, 231, 378, 507, 815
BstDSI CCRYGG 1 cut(s) 225
BstENI CCTNNNNNAGG 1 cut(s) 470
BstF5I GGATG 4 cut(s) 10, 35, 712, 1022
BstHHI GCGC 1 cut(s) 109
BstKTI GATC 5 cut(s) 312, 414, 568, 793, 916
BstMAI GTCTC 1 cut(s) 550
BstMBI GATC 5 cut(s) 309, 411, 565, 790, 913
BstMCI CGRYCG 1 cut(s) 144
BstMWI GCNNNNNNNGC 3 cut(s) 243, 616, 892
BstNI CCWGG 1 cut(s) 257
BstNSI RCATGY 2 cut(s) 721, 802
BstSCI CCNGG 4 cut(s) 27, 255, 499, 953
BstSLI GKGCMC 2 cut(s) 255, 867
BstV1I GCAGC 2 cut(s) 904, 907
BstX2I RGATCY 1 cut(s) 913
BstYI RGATCY 1 cut(s) 913
Bsu36I CCTNAGG 1 cut(s) 183
BsuRI GGCC 1 cut(s) 998
BtgI CCRYGG 1 cut(s) 225
BtrI CACGTC 2 cut(s) 55, 250
BtsCI GGATG 4 cut(s) 10, 35, 712, 1022
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 2 cut(s) 312, 579
Cac8I GCNNGC 1 cut(s) 826
CfoI GCGC 1 cut(s) 109
Cfr13I GGNCC 1 cut(s) 939
CsiI ACCWGGT 1 cut(s) 255
Csp6I GTAC 5 cut(s) 121, 392, 754, 779, 796
CviAII CATG 5 cut(s) 272, 597, 718, 782, 799
CviQI GTAC 5 cut(s) 121, 392, 754, 779, 796
DdeI CTNAG 6 cut(s) 153, 183, 231, 378, 507, 815
DpnI GATC 5 cut(s) 311, 413, 567, 792, 915
DpnII GATC 5 cut(s) 309, 411, 565, 790, 913
EaeI YGGCCR 1 cut(s) 996
Eco130I CCWWGG 2 cut(s) 471, 871
Eco47I GGWCC 1 cut(s) 939
Eco81I CCTNAGG 1 cut(s) 183
Eco88I CYCGRG 1 cut(s) 352
EcoNI CCTNNNNNAGG 1 cut(s) 470
EcoO109I RGGNCCY 1 cut(s) 939
EcoRII CCWGG 1 cut(s) 255
EcoT14I CCWWGG 2 cut(s) 471, 871
ErhI CCWWGG 2 cut(s) 471, 871
FaeI CATG 5 cut(s) 275, 600, 721, 785, 802
FaqI GGGAC 2 cut(s) 128, 925
FatI CATG 5 cut(s) 271, 596, 717, 781, 798
FauNDI CATATG 1 cut(s) 523
FbaI TGATCA 1 cut(s) 309
Fnu4HI GCNGC 5 cut(s) 33, 238, 893, 896, 996
FokI GGATG 4 cut(s) 17, 22, 719, 1009
Fsp4HI GCNGC 5 cut(s) 33, 238, 893, 896, 996
GlaI GCGC 1 cut(s) 108
GluI GCNGC 5 cut(s) 33, 238, 893, 896, 996
HaeIII GGCC 1 cut(s) 998
HapII CCGG 3 cut(s) 29, 501, 955
HhaI GCGC 1 cut(s) 109
Hin1II CATG 5 cut(s) 275, 600, 721, 785, 802
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HincII GTYRAC 1 cut(s) 715
HindII GTYRAC 1 cut(s) 715
HinfI GANTC 9 cut(s) 11, 221, 284, 355, 677, 724, 733, 832, 960
HpaII CCGG 3 cut(s) 29, 501, 955
HphI GGTGA 6 cut(s) 6, 364, 565, 575, 919, 997
Hpy166II GTNNAC 5 cut(s) 52, 225, 253, 454, 715
Hpy188I TCNGA 3 cut(s) 40, 85, 381
Hpy188III TCNNGA 4 cut(s) 58, 182, 730, 737
Hpy8I GTNNAC 5 cut(s) 52, 225, 253, 454, 715
Hpy99I CGWCG 5 cut(s) 59, 98, 128, 142, 251
HpyAV CCTTC 3 cut(s) 382, 585, 904
HpyCH4IV ACGT 2 cut(s) 54, 249
HpyCH4V TGCA 6 cut(s) 253, 291, 368, 577, 848, 1022
HpyF10VI GCNNNNNNNGC 3 cut(s) 243, 616, 892
HpyF3I CTNAG 6 cut(s) 153, 183, 231, 378, 507, 815
HpySE526I ACGT 2 cut(s) 54, 249
Hsp92II CATG 5 cut(s) 275, 600, 721, 785, 802
HspAI GCGC 1 cut(s) 107
KpnI GGTACC 1 cut(s) 395
Ksp22I TGATCA 1 cut(s) 309
Kzo9I GATC 5 cut(s) 309, 411, 565, 790, 913
LmnI GCTCC 2 cut(s) 187, 198
Lsp1109I GCAGC 2 cut(s) 904, 907
LweI GCATC 6 cut(s) 44, 94, 99, 597, 1020, 1031
MabI ACCWGGT 1 cut(s) 255
MaeII ACGT 2 cut(s) 54, 249
MaeIII GTNAC 1 cut(s) 361
MalI GATC 5 cut(s) 311, 413, 567, 792, 915
MboI GATC 5 cut(s) 309, 411, 565, 790, 913
MboII GAAGA 3 cut(s) 170, 436, 539
MflI RGATCY 1 cut(s) 913
MhlI GDGCHC 3 cut(s) 213, 255, 867
MluCI AATT 4 cut(s) 382, 819, 876, 924
MlyI GAGTC 3 cut(s) 230, 364, 718
MmeI TCCRAC 2 cut(s) 241, 953
MseI TTAA 4 cut(s) 684, 695, 879, 966
MspA1I CMGCKG 1 cut(s) 459
MspI CCGG 3 cut(s) 29, 501, 955
MspR9I CCNGG 4 cut(s) 29, 257, 501, 955
MvaI CCWGG 1 cut(s) 257
MwoI GCNNNNNNNGC 3 cut(s) 243, 616, 892
NciI CCSGG 3 cut(s) 29, 501, 955
NdeI CATATG 1 cut(s) 523
NdeII GATC 5 cut(s) 309, 411, 565, 790, 913
NlaIII CATG 5 cut(s) 275, 600, 721, 785, 802
NlaIV GGNNCC 5 cut(s) 62, 393, 464, 866, 941
NmeAIII GCCGAG 2 cut(s) 135, 172
NmuCI GTSAC 1 cut(s) 361
NspI RCATGY 2 cut(s) 721, 802
PaeR7I CTCGAG 1 cut(s) 352
PciI ACATGT 1 cut(s) 798
PcsI WCGNNNNNNNCGW 3 cut(s) 99, 123, 284
PfeI GAWTC 6 cut(s) 11, 284, 677, 733, 832, 960
PkrI GCNGC 5 cut(s) 34, 239, 894, 897, 997
PleI GAGTC 3 cut(s) 229, 363, 718
PpsI GAGTC 3 cut(s) 229, 363, 718
PpuMI RGGWCCY 1 cut(s) 939
PscI ACATGT 1 cut(s) 798
Psp5II RGGWCCY 1 cut(s) 939
Psp6I CCWGG 1 cut(s) 255
PspGI CCWGG 1 cut(s) 255
PspN4I GGNNCC 5 cut(s) 62, 393, 464, 866, 941
PspPI GGNCC 1 cut(s) 939
PspPPI RGGWCCY 1 cut(s) 939
PspXI VCTCGAGB 1 cut(s) 352
PsuI RGATCY 1 cut(s) 913
PvuII CAGCTG 1 cut(s) 459
RsaI GTAC 5 cut(s) 122, 393, 755, 780, 797
RsaNI GTAC 5 cut(s) 121, 392, 754, 779, 796
SaqAI TTAA 4 cut(s) 684, 695, 879, 966
SatI GCNGC 5 cut(s) 33, 238, 893, 896, 996
Sau3AI GATC 5 cut(s) 309, 411, 565, 790, 913
Sau96I GGNCC 1 cut(s) 939
SchI GAGTC 3 cut(s) 230, 364, 718
ScrFI CCNGG 4 cut(s) 29, 257, 501, 955
SduI GDGCHC 3 cut(s) 213, 255, 867
SexAI ACCWGGT 1 cut(s) 255
SfaNI GCATC 6 cut(s) 44, 94, 99, 597, 1020, 1031
Sfr274I CTCGAG 1 cut(s) 352
SinI GGWCC 1 cut(s) 939
SlaI CTCGAG 1 cut(s) 352
SmlI CTYRAG 2 cut(s) 352, 488
SmoI CTYRAG 2 cut(s) 352, 488
Sse9I AATT 4 cut(s) 382, 819, 876, 924
SsiI CCGC 7 cut(s) 8, 32, 144, 237, 546, 983, 995
StyD4I CCNGG 4 cut(s) 27, 255, 499, 953
StyI CCWWGG 2 cut(s) 471, 871
TaiI ACGT 2 cut(s) 57, 252
TaqI TCGA 6 cut(s) 102, 137, 194, 353, 358, 414
TasI AATT 4 cut(s) 382, 819, 876, 924
TatI WGTACW 1 cut(s) 795
TauI GCSGC 3 cut(s) 35, 240, 998
TfiI GAWTC 6 cut(s) 11, 284, 677, 733, 832, 960
Tru1I TTAA 4 cut(s) 684, 695, 879, 966
Tru9I TTAA 4 cut(s) 684, 695, 879, 966
TscAI CASTG 2 cut(s) 312, 579
TseFI GTSAC 1 cut(s) 361
TseI GCWGC 2 cut(s) 892, 895
Tsp45I GTSAC 1 cut(s) 361
TspDTI ATGAA 3 cut(s) 540, 551, 798
TspRI CASTG 2 cut(s) 312, 579
VneI GTGCAC 1 cut(s) 251
VpaK11BI GGWCC 1 cut(s) 939
XagI CCTNNNNNAGG 1 cut(s) 470
XapI RAATTY 1 cut(s) 382
XceI RCATGY 2 cut(s) 721, 802
XhoI CTCGAG 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.