Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0009212

Physical Location & Seq

Genomic Coordinates Reverse (-)

8105337 .. 8111922

Gene Structure 6586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3915 bp

ATGTTCTCTCCCGGAACCAAGCGACCCAATGCGAACCCTCGCCGGGATCTAGGATCTCCGGCCACGCCCCTCACCGAGAACCTCGGGCCCGGCTCGGACAACTCTTTCCCGAATCGGCCTAGCACCGGCACCCCGGCTCCCTGGGCTCCTCGCTTATCTGTTCTCGCCAGGGTTTTACCGGCGAACCAAAATGAAAAGGGGGATGAAACTAAGCCCGTCTTTGTCGGAGAGTTTCCGCAAGTTGTTCGTGATGGACAGGCCAATATGCTGCAGAAGCATGCTCATGGTGATGCATATGTATCCGGTGGAATGGAGAGGGGAACATCCCTGACATGGATTATATGCGGAAATAGACTCTTTGTGTGGAGTTATCTGTCTCCTGCAGTGTCGACGAATTGCAATGTTCTTGAAATTCCTTCGAATGTCTTTGAAGGTCGGGATGTTGGCAGGAGTGGTGGGAACTGTTGGTTGCTTTGTGTTGTGAATTGGGATAGCGCGTCCACGAGAACAAAGAAAGTTGTAAAACATTGTAGCTCCGCTGGTATTGTACTGTGTCACAAGAAAACTCGAGCTGTTGTGTACTGGCCTGAAATTTATGCTGAAGAGAGAACTGACCCCGTTGTTAGTGTTGCATCTGCTGATGAATTGGAGGTGAATTCTTCACCTATTGATAGGAAGACCACACCAAAGCAGCAACAACCGATCAGCAGGCACAGGGGTAGTTTGACTGGGTTTTCTACATTTAACTCTTTGATTGCTTCTGCAGTCCCTGATTCCCAGGATGTGTGCGTTGCACTTACCTGTAGTTCAGATGGCCAGCTATGGCAGTTTCATTGCAGCCCCTCTGGTGTTAGCCGCAAGAAAGTATATCTGGACGATCAAACTCTTCCCTCCCTAGGGGGTGACAATGTTCAAATTTTAGGAAGCAAAGGCTATCCAAGGTCACTGACCTGGTGTTTCCCAAATCTTCAAATTCAGGACTCTAACCGGCGGTTTTTTCTTCTGACAGATCGTGAGATTCAATGCCTTAGTATTGAACTTGGTGCTGATTTCATTGTGTCAAAGCTCTGGTCTCATGAGATTATTGGCTTAGATGGTGATTCGGGAATTAAGAAAGATTTGGCCGGGCAGAAGCGAATCTGGCCGCTTGATATGCAGGTAGACTATCACGGTAAAGTGACTACCATTCTAGTTGCCACCTTCTGCCTGGACCGGGGTAGTAGTTCCAGCTACACACAGTATTCTCTTTTGACCATGCAATACAAATCTGGAATCAGTTTAGAGAAAAAAGCTCCTGTCCAAGTGATAATCCCAAAAGGAAGAGTAGAAGAGGAAGACTTCTTATTCTCCATGAAACTGCGAGTAGGAGGTAAGCCTCAAGGATCAGCAATCATACTTTCTGGTGATGGGACGGCAACAGTATCCCATTACTTTAGAAATTCTACACGGCTTTATAAATTTGACCTCCCTTATGATGCTGGAAAGGTTCTAGATGCTTCAATTCTTCCATCTACAGATGATGGTGAAGAAGGGGCATGGGTTGTGCTTACTGAGAAGGCAGGGATATGGGCAATACCCGAGAAGGCTGTTATACTTGGTGGGGTTGAACCTCCTCAACGAAGTTTGTCACGTAAAGGTAGCTCAAATGAAGGATCTGCACAAGAAGAGAGAAAGAACCTCTCATTTTTGGGCAATATTGCGCCTAGAAGGGCTACTTCTGAAGCATGGGATGCTGGAGATAGACAAAGGGCTGCGACTGTAACTGCACGTCAAACTGCTCAAGATGAAGAATCAGAAACTTTACTTAGCCAGCTGTTCCAAGATTATCATTTATCTGGGCAAGTTGATGCCTCATTTGAAAAGCTAAAAAGATCTGGGGCATTCGAAAGGGATAGAGAGACGAATGCTTTTGCACGAATGAGCAAATCAATTGTTGACACTTTAGCGAAGCACTGGACAACAACTAGAGGAGCTGAGATTTTAGCAATGGCTGTTGTATCCTCCCAACTCATGGATAAGCAACAGAAGCACACAAAGTTTCTCCAGTTTCTTGCTTTATCCAAATGTCATGAGGAGCTGTGTTCAAGACAGAGACATTCTTTGCAAATTATCTTGGAACATGGTGAGAAGCTTGCTGGAATGATTCAACTAAGGGAATTGCAGAACATTATCAGCCAGAACCGCTCCCGTGGACGTAGCCCATCCCGTTCTAGTCCAGAAAATCAAATATCAGGAGCTCTCTGGGATCTTATCCAGTTAGTTGGTGAGCGAGCCCGCCGGAATACTGTTCTTCTGATGGACAGGGACAATGCTGAAGTATTTTACAGTAAAGTTTCAGATCTTGAACAAGTTTTCGATTGCTTAGACAAACAGCTAGAGTATGTAATAAGTGCAGAGCAGCCATTTGAGATTCAGGTTCAGAGAGCTTGTGAACTGTCAAATGCATGTGTTACTATAGTTCGTACAGCCATGCAATACAGAAGTGAGCATCACTTATGGTATCCGCCACCTGAGAGCTTGACACCTTGGTATTCTCAAGCTGTGGTACGCAATGGGATGTGGCACCTCGCTTTCCTCATGCTGCAGCTGTTAAAGGAGGCATCTCAACTTGACGTGTCTGCCAAATTAGATTTATATACTCATCTGGAAGCGCTGGCTGAAGTTTTGCTGGAGGCATATGCTGGTGCTGTCACAGCTAAAGTTGAACAAGGAGATGAACACAAAGGCTTATTGGATGAGTATTGGAATAGGAGGGATGCACTTCTAGACACCCTTTATCAACAAGTCAAAGAATTTGTGGAAGCTGGGCATCAGAATTTAAATGAAGGAACTGAGGATCTAAAAGACGAAATTCTTGCTAGGCTTTCATCATGTTTGTTGCCCATGGCAAAACGGCATGAATGCTACAGTACATTATGGAAAATTTGCTGTGACCTAAATGATTCTGGACTACTAAGAAATCTGATGCACGACAGCATGGGGCCTAATGGAGGGTTCAGTTACTATGTGTTCAAACAACTCTATCTGAGGAGGCAATATTCCAAACTTCTAAGGCTTGGGGAAGAGTTTCATGAAGAGCTATCCATATTTTTAAAGTATCATCAAGACCTTCTGTGGCTTCATGAAGTTTACCTTCATCAATTTTCCCCAGCTTCGGAAACTCTTCATGAATTAGCTCTTTCTCAAGCCGAAAACTCAATTTCCGAGGCTGAAGAGGGGACTGGTCCTACGTATCTGACTATGTTACCGAAACTGGCAGACAGAAAGCGTCTTTTGAATCTCTCAAAAATAGCTGCAATAGCAGGTAAAGATGCTGATTCTGAGACCAAAGTGAAGCGCATTGAGGCTGATTTGAAGATTCTAAAGTTGCAGGAAGAAATACTAAACCTCCTTCCTGATGATGAAACAAAGCAAAGCCTTGACACAAAGCTACTTCATCCGGAAGATCTTATCAAGCTGTGCCTTGAAGGTGAAAGCACAGAGCTCTCATTGCGGGCTTTTGATGTTTTTGCATGGACCAGCCCCTCTTTCCGTCAGACCCACGCAAACCTTTTGGAGCATTGCTGGAGAAACGCTGCTGATCAAGATGATTGGAGTCAACTCTATCAAGCATCAGTATCCGAAGGGTGGGGTGATGAAGAAACCTTGCAGAACCTGAAAGACACCGTGCTCTTCCAGGCTTCAAACAGATGCTATGGACCCGAAGCTGAAACCTTTGGAGAAGGGTTTGAGGAAGTGTTGCCGCTGAGACAAGAAATCCCAGAGCCTACAGTCATGAAAGATACAGTTTCTTCTGTGGAAGCCATACTCATGCAGCATAAAGATTACTCCGAGGCAGGCAAGCTAATGCTGACTGCAATCATGTTGGGTAGCTTACAGGATGATACCGAAGAAGGTCCTGTGCCTATGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000972 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0006325 GO:0006355 GO:0006403 GO:0006405 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0008104 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0031080 GO:0031081 GO:0031323 GO:0031326 GO:0031503 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0034629 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051276 GO:0051641 GO:0051649 GO:0051664 GO:0051668 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nucleoporin_C Nucleoporin_N

Protein Analysis

1305

Amino Acids

146.09

Weight (kDa)

5.5

Isoelectric Point (pI)

47.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleoporin_N	PF08801	72 - 523	6e-30	Nup133 N terminal like
Nucleoporin_C	PF03177	998 - 1152	1.9e-06	Non-repetitive/WGA-negative nucleoporin C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05120 AT2G05120
fragaria_vesca	FvH4_6g40930 FvH4_6g40930 FvH4_6g40930 FvH4_6g40930 FvH4_6g40930
malus_domestica	MD17G1113600.v1.1
prunus_persica	Prupe.3G200800_v2.0.a1
pyrus_communis	pycom17g10520
rosa_chinensis	RchiOBHm_Chr2g0156551
rosa_laevigata	RLG00000020920
rosa_multiflora	Rmu_sc0002717.1_g000003
rosa_roxburghii	Rroxscaffold_2G00092950
rosa_rugosa	Rorug02G0454100 Rorug02G0454200 Rorug02G0454300
rosa_samantha	Rh2AG520000 Rh2BG532500 Rh2CG505000 Rh2DG541400
rosa_wichuraiana	Rw2G042870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1455
Acc36I	ACCTGC	2 cut(s)	1147, 3293
AccB1I	GGYRCC	2 cut(s)	128, 2562
AccB7I	CCANNNNNTGG	1 cut(s)	2011
AccBSI	CCGCTC	1 cut(s)	2184
AccI	GTMKAC	2 cut(s)	389, 1161
AccII	CGCG	1 cut(s)	497
AccIII	TCCGGA	1 cut(s)	3439
AclWI	GGATC	6 cut(s)	54, 61, 1390, 1660, 2253, 2844
AcoI	YGGCCR	4 cut(s)	60, 814, 1122, 1142
AcuI	CTGAAG	5 cut(s)	621, 1740, 2334, 2679, 3231
AfaI	GTAC	5 cut(s)	549, 581, 2464, 2547, 2911
AfeI	AGCGCT	1 cut(s)	2652
AflIII	ACRYGT	1 cut(s)	2613
AjiI	CACGTC	2 cut(s)	1769, 2614
AjnI	CCWGG	6 cut(s)	140, 167, 777, 950, 1206, 3675
Alw21I	GWGCWC	3 cut(s)	2239, 3486, 3672
Alw26I	GTCTC	6 cut(s)	381, 1077, 1892, 2086, 3317, 3742
AlwI	GGATC	6 cut(s)	54, 61, 1390, 1660, 2253, 2844
AlwNI	CAGNNNCTG	2 cut(s)	770, 3655
Ama87I	CYCGRG	3 cut(s)	83, 567, 1577
Aor13HI	TCCGGA	1 cut(s)	3439
Aor51HI	AGCGCT	1 cut(s)	2652
AoxI	GGCC	9 cut(s)	60, 86, 116, 258, 584, 814, 1122, 1142, 2981
ApaI	GGGCCC	1 cut(s)	90
ArsI	GACNNNNNNTTYG	2 cut(s)	1055, 1087
Asp700I	GAANNNNTTC	2 cut(s)	3066, 3162
AspA2I	CCTAGG	1 cut(s)	895
AspLEI	GCGC	4 cut(s)	497, 1702, 2653, 3339
AspS9I	GGNCC	8 cut(s)	86, 87, 1210, 2981, 3224, 3516, 3698, 3896
AsuC2I	CCSGG	6 cut(s)	12, 44, 90, 134, 1126, 1214
AsuII	TTCGAA	2 cut(s)	419, 1884
AvaI	CYCGRG	3 cut(s)	83, 567, 1577
AvaII	GGWCC	5 cut(s)	1210, 3224, 3516, 3698, 3896
AvrII	CCTAGG	1 cut(s)	895
BaeGI	GKGCMC	1 cut(s)	90
BalI	TGGCCA	1 cut(s)	816
BanI	GGYRCC	2 cut(s)	128, 2562
BanII	GRGCYC	5 cut(s)	90, 148, 2239, 2275, 3486
BauI	CACGAG	1 cut(s)	502
BbsI	GAAGAC	2 cut(s)	683, 1341
Bbv12I	GWGCWC	3 cut(s)	2239, 3486, 3672
BccI	CCATC	8 cut(s)	245, 806, 1088, 1400, 1514, 1516, 2209, 2290
BceAI	ACGGC	3 cut(s)	1428, 1463, 2909
BcgI	CGANNNNNNTGC	4 cut(s)	227, 261, 2837, 2871
BciT130I	CCWGG	6 cut(s)	142, 169, 779, 952, 1208, 3677
BciVI	GTATCC	5 cut(s)	310, 1432, 2008, 2511, 3628
BclI	TGATCA	1 cut(s)	3580
BcnI	CCSGG	6 cut(s)	12, 44, 90, 134, 1126, 1214
BcoDI	GTCTC	6 cut(s)	381, 1077, 1892, 2086, 3317, 3742
BfmI	CTRYAG	9 cut(s)	269, 381, 762, 802, 1512, 2454, 2582, 2905, 3768
BfoI	RGCGCY	1 cut(s)	2654
BfuAI	ACCTGC	2 cut(s)	1147, 3293
BfuI	GTATCC	5 cut(s)	310, 1432, 2008, 2511, 3628
BglII	AGATCT	3 cut(s)	1871, 2338, 3445
BlnI	CCTAGG	1 cut(s)	895
Bme18I	GGWCC	5 cut(s)	1210, 3224, 3516, 3698, 3896
BmeT110I	CYCGRG	3 cut(s)	83, 567, 1577
BmgBI	CACGTC	2 cut(s)	1769, 2614
BmgT120I	GGNCC	8 cut(s)	86, 87, 1210, 2981, 3224, 3516, 3698, 3896
BmiI	GGNNCC	8 cut(s)	16, 88, 130, 138, 147, 2564, 2982, 3700
BmrI	ACTGGG	1 cut(s)	738
BmuI	ACTGGG	1 cut(s)	738
BpiI	GAAGAC	2 cut(s)	683, 1341
BpmI	CTGGAG	4 cut(s)	1755, 2027, 2690, 3586
Bpu14I	TTCGAA	2 cut(s)	419, 1884
BpuEI	CTTGAG	4 cut(s)	1362, 1764, 2520, 3168
BpuMI	CCSGG	6 cut(s)	12, 44, 90, 134, 1126, 1214
BsaAI	YACGTR	2 cut(s)	1631, 3231
BsaI	GGTCTC	2 cut(s)	1077, 3317
BsaWI	WCCGGW	2 cut(s)	302, 3439
BsaXI	ACNNNNNCTCC	4 cut(s)	121, 151, 3372, 3402
Bse118I	RCCGGY	3 cut(s)	125, 178, 987
Bse1I	ACTGG	7 cut(s)	587, 733, 1958, 2044, 2254, 3226, 3258
Bse3DI	GCAATG	6 cut(s)	406, 832, 1992, 2557, 3488, 3559
BseAI	TCCGGA	1 cut(s)	3439
BseBI	CCWGG	6 cut(s)	142, 169, 779, 952, 1208, 3677
BseMI	GCAATG	6 cut(s)	406, 832, 1992, 2557, 3488, 3559
BseMII	CTCAG	7 cut(s)	1542, 1965, 2502, 2823, 3017, 3312, 3737
BseNI	ACTGG	7 cut(s)	587, 733, 1958, 2044, 2254, 3226, 3258
BseRI	GAGGAG	5 cut(s)	138, 1602, 1983, 2087, 3043
BseSI	GKGCMC	1 cut(s)	90
BseYI	CCCAGC	2 cut(s)	2804, 3148
BsgI	GTGCAG	3 cut(s)	1641, 1749, 2412
Bsh1236I	CGCG	1 cut(s)	497
BshFI	GGCC	9 cut(s)	62, 88, 118, 260, 586, 816, 1124, 1144, 2983
BshNI	GGYRCC	2 cut(s)	128, 2562
BsiHKAI	GWGCWC	3 cut(s)	2239, 3486, 3672
BsiHKCI	CYCGRG	3 cut(s)	83, 567, 1577
BslFI	GGGAC	4 cut(s)	752, 1423, 2318, 3232
BsmAI	GTCTC	6 cut(s)	381, 1077, 1892, 2086, 3317, 3742
BsmBI	CGTCTC	1 cut(s)	1892
BsmFI	GGGAC	4 cut(s)	752, 1423, 2318, 3232
BsmI	GAATGC	3 cut(s)	1880, 1909, 2906
BsnI	GGCC	9 cut(s)	62, 88, 118, 260, 586, 816, 1124, 1144, 2983
Bso31I	GGTCTC	2 cut(s)	1077, 3317
BsoBI	CYCGRG	3 cut(s)	83, 567, 1577
Bsp119I	TTCGAA	2 cut(s)	419, 1884
Bsp120I	GGGCCC	1 cut(s)	86
Bsp1286I	GDGCHC	6 cut(s)	90, 148, 2239, 2275, 3486, 3672
Bsp13I	TCCGGA	1 cut(s)	3439
Bsp19I	CCATGG	1 cut(s)	2883
BspANI	GGCC	9 cut(s)	62, 88, 118, 260, 586, 816, 1124, 1144, 2983
BspCNI	CTCAG	7 cut(s)	1543, 1966, 2503, 2824, 3018, 3313, 3738
BspEI	TCCGGA	1 cut(s)	3439
BspFNI	CGCG	1 cut(s)	497
BspHI	TCATGA	6 cut(s)	1075, 2068, 3070, 3121, 3166, 3774
BspLI	GGNNCC	8 cut(s)	16, 88, 130, 138, 147, 2564, 2982, 3700
BspMAI	CTGCAG	4 cut(s)	273, 385, 766, 2586
BspMI	ACCTGC	2 cut(s)	1147, 3293
BspPI	GGATC	6 cut(s)	54, 61, 1390, 1660, 2253, 2844
BspQI	GCTCTTC	2 cut(s)	3069, 3677
BspT104I	TTCGAA	2 cut(s)	419, 1884
BspT107I	GGYRCC	2 cut(s)	128, 2562
BspTNI	GGTCTC	2 cut(s)	1077, 3317
BsrBI	CCGCTC	1 cut(s)	2184
BsrDI	GCAATG	6 cut(s)	406, 832, 1992, 2557, 3488, 3559
BsrFI	RCCGGY	3 cut(s)	125, 178, 987
BsrI	ACTGG	7 cut(s)	587, 733, 1958, 2044, 2254, 3226, 3258
BssAI	RCCGGY	3 cut(s)	125, 178, 987
BssSI	CACGAG	1 cut(s)	502
BssT1I	CCWWGG	4 cut(s)	895, 938, 2525, 2883
Bst2BI	CACGAG	1 cut(s)	502
Bst2UI	CCWGG	6 cut(s)	142, 169, 779, 952, 1208, 3677
BstAPI	GCANNNNNTGC	1 cut(s)	1730
BstBAI	YACGTR	2 cut(s)	1631, 3231
BstBI	TTCGAA	2 cut(s)	419, 1884
BstDSI	CCRYGG	2 cut(s)	2188, 2883
BstENI	CCTNNNNNAGG	1 cut(s)	2988
BstFNI	CGCG	1 cut(s)	497
BstH2I	RGCGCY	1 cut(s)	2654
BstHHI	GCGC	4 cut(s)	497, 1702, 2653, 3339
BstMAI	GTCTC	6 cut(s)	381, 1077, 1892, 2086, 3317, 3742
BstNI	CCWGG	6 cut(s)	142, 169, 779, 952, 1208, 3677
BstNSI	RCATGY	2 cut(s)	281, 2448
BstSFI	CTRYAG	9 cut(s)	269, 381, 762, 802, 1512, 2454, 2582, 2905, 3768
BstSLI	GKGCMC	1 cut(s)	90
BstSNI	TACGTA	1 cut(s)	3231
BstUI	CGCG	1 cut(s)	497
BstV2I	GAAGAC	2 cut(s)	683, 1341
BstX2I	RGATCY	8 cut(s)	46, 53, 1652, 1871, 2245, 2338, 2836, 3445
BstXI	CCANNNNNNTGG	1 cut(s)	2261
BstYI	RGATCY	8 cut(s)	46, 53, 1652, 1871, 2245, 2338, 2836, 3445
BsuI	GTATCC	5 cut(s)	310, 1432, 2008, 2511, 3628
BsuRI	GGCC	9 cut(s)	62, 88, 118, 260, 586, 816, 1124, 1144, 2983
BtgI	CCRYGG	2 cut(s)	2188, 2883
BtrI	CACGTC	2 cut(s)	1769, 2614
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	3 cut(s)	390, 944, 1951
BveI	ACCTGC	2 cut(s)	1147, 3293
CaiI	CAGNNNCTG	2 cut(s)	770, 3655
CciI	TCATGA	6 cut(s)	1075, 2068, 3070, 3121, 3166, 3774
CfoI	GCGC	4 cut(s)	497, 1702, 2653, 3339
Cfr10I	RCCGGY	3 cut(s)	125, 178, 987
Cfr13I	GGNCC	8 cut(s)	86, 87, 1210, 2981, 3224, 3516, 3698, 3896
CseI	GACGC	2 cut(s)	486, 3257
CsiI	ACCWGGT	1 cut(s)	950
Csp6I	GTAC	5 cut(s)	548, 580, 2463, 2546, 2910
CviQI	GTAC	5 cut(s)	548, 580, 2463, 2546, 2910
DraI	TTTAAA	2 cut(s)	2820, 3093
EaeI	YGGCCR	4 cut(s)	60, 814, 1122, 1142
EciI	GGCGGA	1 cut(s)	2493
Ecl136II	GAGCTC	2 cut(s)	2237, 3484
Eco105I	TACGTA	1 cut(s)	3231
Eco130I	CCWWGG	4 cut(s)	895, 938, 2525, 2883
Eco24I	GRGCYC	5 cut(s)	90, 148, 2239, 2275, 3486
Eco31I	GGTCTC	2 cut(s)	1077, 3317
Eco47I	GGWCC	5 cut(s)	1210, 3224, 3516, 3698, 3896
Eco47III	AGCGCT	1 cut(s)	2652
Eco53kI	GAGCTC	2 cut(s)	2237, 3484
Eco57I	CTGAAG	5 cut(s)	621, 1740, 2334, 2679, 3231
Eco88I	CYCGRG	3 cut(s)	83, 567, 1577
EcoICRI	GAGCTC	2 cut(s)	2237, 3484
EcoNI	CCTNNNNNAGG	1 cut(s)	2988
EcoO109I	RGGNCCY	2 cut(s)	2981, 3896
EcoRI	GAATTC	1 cut(s)	655
EcoRII	CCWGG	6 cut(s)	140, 167, 777, 950, 1206, 3675
EcoT14I	CCWWGG	4 cut(s)	895, 938, 2525, 2883
EcoT22I	ATGCAT	2 cut(s)	295, 2446
EcoT38I	GRGCYC	5 cut(s)	90, 148, 2239, 2275, 3486
ErhI	CCWWGG	4 cut(s)	895, 938, 2525, 2883
Esp3I	CGTCTC	1 cut(s)	1892
FalI	AAGNNNNNCTT	6 cut(s)	203, 235, 1699, 1731, 3117, 3149
FaqI	GGGAC	4 cut(s)	752, 1423, 2318, 3232
FauI	CCCGC	2 cut(s)	2282, 3486
FauNDI	CATATG	2 cut(s)	295, 2677
FbaI	TGATCA	1 cut(s)	3580
FblI	GTMKAC	2 cut(s)	389, 1161
FriOI	GRGCYC	5 cut(s)	90, 148, 2239, 2275, 3486
GlaI	GCGC	4 cut(s)	496, 1701, 2652, 3338
GsaI	CCCAGC	2 cut(s)	2808, 3152
GsuI	CTGGAG	4 cut(s)	1755, 2027, 2690, 3586
HaeII	RGCGCY	1 cut(s)	2654
HaeIII	GGCC	9 cut(s)	62, 88, 118, 260, 586, 816, 1124, 1144, 2983
HgaI	GACGC	2 cut(s)	486, 3257
HhaI	GCGC	4 cut(s)	497, 1702, 2653, 3339
Hin6I	GCGC	4 cut(s)	495, 1700, 2651, 3337
HinP1I	GCGC	4 cut(s)	495, 1700, 2651, 3337
HincII	GTYRAC	3 cut(s)	390, 1936, 3599
HindII	GTYRAC	3 cut(s)	390, 1936, 3599
HindIII	AAGCTT	1 cut(s)	2129
Hpy166II	GTNNAC	9 cut(s)	390, 501, 580, 1162, 1936, 2192, 2432, 3130, 3599
Hpy8I	GTNNAC	9 cut(s)	390, 501, 580, 1162, 1936, 2192, 2432, 3130, 3599
Hpy99I	CGWCG	1 cut(s)	394
HpyCH4IV	ACGT	5 cut(s)	1630, 1768, 2194, 2613, 3230
HpySE526I	ACGT	5 cut(s)	1630, 1768, 2194, 2613, 3230
HspAI	GCGC	4 cut(s)	495, 1700, 2651, 3337
Kpn2I	TCCGGA	1 cut(s)	3439
Ksp22I	TGATCA	1 cut(s)	3580
LguI	GCTCTTC	2 cut(s)	3069, 3677
LmnI	GCTCC	9 cut(s)	142, 151, 539, 1297, 1970, 2074, 2189, 2234, 3556
MabI	ACCWGGT	1 cut(s)	950
MaeII	ACGT	5 cut(s)	1630, 1768, 2194, 2613, 3230
MbiI	CCGCTC	1 cut(s)	2184
MfeI	CAATTG	1 cut(s)	1929
MflI	RGATCY	8 cut(s)	46, 53, 1652, 1871, 2245, 2338, 2836, 3445
MhlI	GDGCHC	6 cut(s)	90, 148, 2239, 2275, 3486, 3672
MlsI	TGGCCA	1 cut(s)	816
MluNI	TGGCCA	1 cut(s)	816
MlyI	GAGTC	3 cut(s)	348, 974, 3604
MmeI	TCCRAC	1 cut(s)	205
Mox20I	TGGCCA	1 cut(s)	816
Mph1103I	ATGCAT	2 cut(s)	295, 2446
MroI	TCCGGA	1 cut(s)	3439
MroXI	GAANNNNTTC	2 cut(s)	3066, 3162
MscI	TGGCCA	1 cut(s)	816
MseI	TTAA	5 cut(s)	744, 1110, 2591, 2819, 3092
MslI	CAYNNNNRTG	3 cut(s)	282, 288, 3809
Msp20I	TGGCCA	1 cut(s)	816
MspA1I	CMGCKG	4 cut(s)	539, 1813, 2587, 3745
MunI	CAATTG	1 cut(s)	1929
Mva1269I	GAATGC	3 cut(s)	1880, 1909, 2906
MvaI	CCWGG	6 cut(s)	142, 169, 779, 952, 1208, 3677
MvnI	CGCG	1 cut(s)	497
NciI	CCSGG	6 cut(s)	12, 44, 90, 134, 1126, 1214
NcoI	CCATGG	1 cut(s)	2883
NdeI	CATATG	2 cut(s)	295, 2677
NlaIV	GGNNCC	8 cut(s)	16, 88, 130, 138, 147, 2564, 2982, 3700
NmuCI	GTSAC	7 cut(s)	554, 902, 942, 1177, 1626, 2689, 2930
NsiI	ATGCAT	2 cut(s)	295, 2446
NspI	RCATGY	2 cut(s)	281, 2448
NspV	TTCGAA	2 cut(s)	419, 1884
PaeI	GCATGC	1 cut(s)	281
PaeR7I	CTCGAG	1 cut(s)	567
PagI	TCATGA	6 cut(s)	1075, 2068, 3070, 3121, 3166, 3774
PasI	CCCWGGG	1 cut(s)	141
PciSI	GCTCTTC	2 cut(s)	3069, 3677
PctI	GAATGC	3 cut(s)	1880, 1909, 2906
PdmI	GAANNNNTTC	2 cut(s)	3066, 3162
PflMI	CCANNNNNTGG	1 cut(s)	2011
PfoI	TCCNGGA	1 cut(s)	10
PleI	GAGTC	3 cut(s)	348, 974, 3603
PpsI	GAGTC	3 cut(s)	348, 974, 3603
Ppu21I	YACGTR	2 cut(s)	1631, 3231
PpuMI	RGGWCCY	1 cut(s)	3896
PsiI	TTATAA	1 cut(s)	1455
Psp124BI	GAGCTC	2 cut(s)	2239, 3486
Psp5II	RGGWCCY	1 cut(s)	3896
Psp6I	CCWGG	6 cut(s)	140, 167, 777, 950, 1206, 3675
PspFI	CCCAGC	2 cut(s)	2804, 3148
PspGI	CCWGG	6 cut(s)	140, 167, 777, 950, 1206, 3675
PspN4I	GGNNCC	8 cut(s)	16, 88, 130, 138, 147, 2564, 2982, 3700
PspOMI	GGGCCC	1 cut(s)	86
PspPI	GGNCC	8 cut(s)	86, 87, 1210, 2981, 3224, 3516, 3698, 3896
PspPPI	RGGWCCY	1 cut(s)	3896
PspXI	VCTCGAGB	1 cut(s)	567
PstI	CTGCAG	4 cut(s)	273, 385, 766, 2586
PstNI	CAGNNNCTG	2 cut(s)	770, 3655
PsuI	RGATCY	8 cut(s)	46, 53, 1652, 1871, 2245, 2338, 2836, 3445
PvuII	CAGCTG	2 cut(s)	1813, 2587
RsaI	GTAC	5 cut(s)	549, 581, 2464, 2547, 2911
RsaNI	GTAC	5 cut(s)	548, 580, 2463, 2546, 2910
RseI	CAYNNNNRTG	3 cut(s)	282, 288, 3809
SacI	GAGCTC	2 cut(s)	2239, 3486
SalI	GTCGAC	1 cut(s)	388
SapI	GCTCTTC	2 cut(s)	3069, 3677
SaqAI	TTAA	5 cut(s)	744, 1110, 2591, 2819, 3092
Sau96I	GGNCC	8 cut(s)	86, 87, 1210, 2981, 3224, 3516, 3698, 3896
SchI	GAGTC	3 cut(s)	348, 974, 3604
SduI	GDGCHC	6 cut(s)	90, 148, 2239, 2275, 3486, 3672
SexAI	ACCWGGT	1 cut(s)	950
SfcI	CTRYAG	9 cut(s)	269, 381, 762, 802, 1512, 2454, 2582, 2905, 3768
Sfr274I	CTCGAG	1 cut(s)	567
SfuI	TTCGAA	2 cut(s)	419, 1884
SinI	GGWCC	5 cut(s)	1210, 3224, 3516, 3698, 3896
SlaI	CTCGAG	1 cut(s)	567
SmiI	ATTTAAAT	1 cut(s)	2820
SmiMI	CAYNNNNRTG	3 cut(s)	282, 288, 3809
SmlI	CTYRAG	5 cut(s)	567, 1377, 1779, 2535, 3183
SmoI	CTYRAG	5 cut(s)	567, 1377, 1779, 2535, 3183
SnaBI	TACGTA	1 cut(s)	3231
SphI	GCATGC	1 cut(s)	281
SspI	AATATT	2 cut(s)	1696, 3038
SstI	GAGCTC	2 cut(s)	2239, 3486
StyI	CCWWGG	4 cut(s)	895, 938, 2525, 2883
SwaI	ATTTAAAT	1 cut(s)	2820
TaiI	ACGT	5 cut(s)	1633, 1771, 2197, 2616, 3233
TaqI	TCGA	5 cut(s)	389, 419, 568, 1884, 2355
TatI	WGTACW	3 cut(s)	547, 579, 2909
TauI	GCSGC	3 cut(s)	858, 1147, 3745
Tru1I	TTAA	5 cut(s)	744, 1110, 2591, 2819, 3092
Tru9I	TTAA	5 cut(s)	744, 1110, 2591, 2819, 3092
TscAI	CASTG	3 cut(s)	390, 951, 1958
TseFI	GTSAC	7 cut(s)	554, 902, 942, 1177, 1626, 2689, 2930
Tsp45I	GTSAC	7 cut(s)	554, 902, 942, 1177, 1626, 2689, 2930
TspGWI	ACGGA	1 cut(s)	3521
TspRI	CASTG	3 cut(s)	390, 951, 1958
Van91I	CCANNNNNTGG	1 cut(s)	2011
VpaK11BI	GGWCC	5 cut(s)	1210, 3224, 3516, 3698, 3896
XagI	CCTNNNNNAGG	1 cut(s)	2988
XbaI	TCTAGA	2 cut(s)	1489, 2764
XceI	RCATGY	2 cut(s)	281, 2448
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1204
XhoI	CTCGAG	1 cut(s)	567
XmaJI	CCTAGG	1 cut(s)	895
XmiI	GTMKAC	2 cut(s)	389, 1161
XmnI	GAANNNNTTC	2 cut(s)	3066, 3162
Zsp2I	ATGCAT	2 cut(s)	295, 2446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.