pycom17g10890

Long chain acyl-CoA synthetase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
8457119 .. 8459554
2436 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1245 bp
ATGACAGTGGTTCCAAGTCTGGGTAGCGCTGATGTCTACCTGGCATACTTGCCATTGGCTCATGTTTTCGAATTGGCAGCTGAGTCTGTGATGCTGGCTGCAGGCTGTTCAATTGGTTATGGTTCAGCATTGACTTTAACAGACACTTCAAATAAAGTTAAAAAAGGAACCAAGGGAGATGCAACTATGTTACAGCCAACCATCATGACAGCAGTTCCTGCTATTTTAGATCGTGTTCGAGATGGAGTTCTGAAAAAGGTTGATGAGAAAGGGGGCTATGCTAAGAATCTTTTTAATCTTGGGTTTAGACGGCGACTGGCGGCTGTAGAAGGAAGCTGGTTTGGGGCTTGGGGTTTGGAAAGGATGTTGTGGGATGTCGTTGTCTTCAAAAAAATACGCTCATTACTTGGAGGACGCATTCGTTTTATGCTCTGTGGTGGTGCTCCTTTGTCTGGTGATTCACAGCGATTCATCAATATTTGCATGGGGGCTCCTATTGGGCAAGCATATGGTTTGACAGAAACATTTGCTGGAGCTACGTTTTCCGAGGCGGATGACACAACCGTGGGCCGTGTTGGTCCTCCCCTTCCTTGTGGATACATTAAGCTTGTTTCTTGGGAAGAAGGAGGATACTTGCCATCTGACAAGCCTATGCCTCGTGGGGAGATTGTAGTCGGGGGATACAGTGTAACTGCTGGTTACTTTAAGAACCAAGAAAAGACTGATGAGGTGTTTAAGGTTGATGAGAAGGGCATGCGTTGGTTTTATACCGGTGACATTGGAATGTTTCATCCTGATGGATGCCTTGAAATTATTGATAGGAAGAAGGATATCGTTAAACTCCAGCATGGAGAGTACATTTCCCTTGGAAAGGTTGAAGCGGCATTAGCATCAAGTAATTATGTGGACAACATCATGGCATATGCTGATCCCTCACACAACTTTTGCGTAGCTCTAATTGTCCCTGCACGTCAGGCCCTCGAGAAGTGGGCACAGGAAGCCGGTGTCCAGTACAATGATTTTCCCGAGCTGTGTGAAAAAGCTGAAACAGTCAGTGAGGTTCAGCAATCCCTCTCCAAGGTAGCAAAAGCATCGAAATTGGATAAGTTCGAACTTCCTGCGAAGATTCGGTTGCTGTCCGAGCCTTGGACGCCCGAGTCCGGATTGGTTACTGCTGCTATGAAGATTAAGAGAGAACAGATCAAGGCCAAGTTCAAAAATGAGCTCAACAAGTTGTATGCTTGA

Protein Analysis

415

Amino Acids

45.34

Weight (kDa)

8.01

Isoelectric Point (pI)

30.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMP-binding PF00501 7 - 235 7.7e-35 AMP-binding enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1156
AccI GTMKAC 1 cut(s) 36
AccIII TCCGGA 1 cut(s) 1160
AciI CCGC 3 cut(s) 320, 551, 881
AclWI GGATC 1 cut(s) 923
AcyI GRCGYC 1 cut(s) 1151
AfaI GTAC 2 cut(s) 857, 1013
AfeI AGCGCT 1 cut(s) 28
AfiI CCNNNNNNNGG 6 cut(s) 20, 452, 871, 1078, 1146, 1160
AgeI ACCGGT 1 cut(s) 770
AgsI TTSAA 6 cut(s) 111, 150, 388, 809, 878, 1216
AjiI CACGTC 1 cut(s) 971
AjnI CCWGG 1 cut(s) 39
AleI CACNNNNGTG 1 cut(s) 563
AluBI AGCT 8 cut(s) 80, 336, 536, 607, 953, 1030, 1043, 1225
AluI AGCT 8 cut(s) 80, 336, 536, 607, 953, 1030, 1043, 1225
Alw21I GWGCWC 2 cut(s) 445, 1227
AlwI GGATC 1 cut(s) 923
AlwNI CAGNNNCTG 1 cut(s) 218
Ama87I CYCGRG 3 cut(s) 980, 1025, 1154
Aor13HI TCCGGA 1 cut(s) 1160
Aor51HI AGCGCT 1 cut(s) 28
AoxI GGCC 3 cut(s) 568, 975, 1206
ApeKI GCWGC 3 cut(s) 77, 98, 1175
AsiGI ACCGGT 1 cut(s) 770
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 3 cut(s) 568, 578, 976
AsuHPI GGTGA 2 cut(s) 467, 785
AsuII TTCGAA 2 cut(s) 69, 1110
AvaI CYCGRG 3 cut(s) 980, 1025, 1154
AvaII GGWCC 1 cut(s) 578
BaeGI GKGCMC 1 cut(s) 994
BanII GRGCYC 2 cut(s) 493, 1227
BauI CACGAG 1 cut(s) 657
BbsI GAAGAC 1 cut(s) 376
Bbv12I GWGCWC 2 cut(s) 445, 1227
BbvI GCAGC 3 cut(s) 85, 89, 1162
BccI CCATC 4 cut(s) 209, 236, 646, 791
BceAI ACGGC 2 cut(s) 326, 555
BcgI CGANNNNNNTGC 4 cut(s) 1074, 1100, 1108, 1134
BciT130I CCWGG 1 cut(s) 41
BciVI GTATCC 3 cut(s) 590, 623, 674
BfmI CTRYAG 2 cut(s) 99, 324
BfoI RGCGCY 1 cut(s) 30
BfuI GTATCC 3 cut(s) 590, 623, 674
BisI GCNGC 5 cut(s) 78, 99, 321, 882, 1176
BlsI GCNGC 5 cut(s) 79, 100, 322, 883, 1177
Bme1390I CCNGG 1 cut(s) 41
Bme18I GGWCC 1 cut(s) 578
BmeT110I CYCGRG 3 cut(s) 980, 1025, 1154
BmgBI CACGTC 1 cut(s) 971
BmgT120I GGNCC 3 cut(s) 568, 578, 976
BmiI GGNNCC 3 cut(s) 12, 169, 492
BmrFI CCNGG 1 cut(s) 41
BmsI GCATC 5 cut(s) 81, 169, 791, 899, 1100
BpiI GAAGAC 1 cut(s) 376
BpmI CTGGAG 2 cut(s) 552, 827
Bpu14I TTCGAA 2 cut(s) 69, 1110
BsaHI GRCGYC 1 cut(s) 1151
BsaJI CCNNGG 6 cut(s) 171, 546, 564, 865, 1077, 1145
BsaWI WCCGGW 2 cut(s) 770, 1160
Bsc4I CCNNNNNNNGG 6 cut(s) 20, 452, 871, 1078, 1146, 1160
Bse118I RCCGGY 2 cut(s) 770, 1001
Bse1I ACTGG 2 cut(s) 321, 1009
BseAI TCCGGA 1 cut(s) 1160
BseBI CCWGG 1 cut(s) 41
BseDI CCNNGG 6 cut(s) 171, 546, 564, 865, 1077, 1145
BseGI GGATG 5 cut(s) 369, 379, 559, 790, 806
BseLI CCNNNNNNNGG 6 cut(s) 20, 452, 871, 1078, 1146, 1160
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 2 cut(s) 321, 1009
BseSI GKGCMC 1 cut(s) 994
BseXI GCAGC 3 cut(s) 85, 89, 1162
BsgI GTGCAG 1 cut(s) 951
BshFI GGCC 3 cut(s) 570, 977, 1208
BshTI ACCGGT 1 cut(s) 770
BsiHKAI GWGCWC 2 cut(s) 445, 1227
BsiHKCI CYCGRG 3 cut(s) 980, 1025, 1154
BsiSI CCGG 3 cut(s) 771, 1002, 1161
BslFI GGGAC 1 cut(s) 947
BslI CCNNNNNNNGG 6 cut(s) 20, 452, 871, 1078, 1146, 1160
BsmFI GGGAC 1 cut(s) 947
BsmI GAATGC 1 cut(s) 417
BsnI GGCC 3 cut(s) 570, 977, 1208
BsoBI CYCGRG 3 cut(s) 980, 1025, 1154
Bsp119I TTCGAA 2 cut(s) 69, 1110
Bsp1286I GDGCHC 4 cut(s) 445, 493, 994, 1227
Bsp13I TCCGGA 1 cut(s) 1160
Bsp143I GATC 3 cut(s) 229, 928, 1200
BspACI CCGC 3 cut(s) 320, 551, 881
BspANI GGCC 3 cut(s) 570, 977, 1208
BspCNI CTCAG 1 cut(s) 73
BspEI TCCGGA 1 cut(s) 1160
BspHI TCATGA 1 cut(s) 204
BspLI GGNNCC 3 cut(s) 12, 169, 492
BspMAI CTGCAG 1 cut(s) 103
BspPI GGATC 1 cut(s) 923
BspT104I TTCGAA 2 cut(s) 69, 1110
BsrFI RCCGGY 2 cut(s) 770, 1001
BsrI ACTGG 2 cut(s) 321, 1009
BssAI RCCGGY 2 cut(s) 770, 1001
BssECI CCNNGG 6 cut(s) 171, 546, 564, 865, 1077, 1145
BssMI GATC 3 cut(s) 229, 928, 1200
BssNI GRCGYC 1 cut(s) 1151
BssSI CACGAG 1 cut(s) 657
BssT1I CCWWGG 4 cut(s) 171, 865, 1077, 1145
Bst2BI CACGAG 1 cut(s) 657
Bst2UI CCWGG 1 cut(s) 41
Bst4CI ACNGT 4 cut(s) 7, 565, 686, 1051
BstACI GRCGYC 1 cut(s) 1151
BstAPI GCANNNNNTGC 1 cut(s) 218
BstBI TTCGAA 2 cut(s) 69, 1110
BstC8I GCNNGC 4 cut(s) 96, 103, 504, 755
BstDEI CTNAG 2 cut(s) 81, 282
BstDSI CCRYGG 1 cut(s) 564
BstENI CCTNNNNNAGG 2 cut(s) 869, 1076
BstF5I GGATG 5 cut(s) 369, 379, 559, 790, 806
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 3 cut(s) 232, 931, 1203
BstMBI GATC 3 cut(s) 229, 928, 1200
BstMWI GCNNNNNNNGC 6 cut(s) 218, 887, 974, 998, 1141, 1150
BstNI CCWGG 1 cut(s) 41
BstNSI RCATGY 1 cut(s) 757
BstSCI CCNGG 1 cut(s) 39
BstSFI CTRYAG 2 cut(s) 99, 324
BstSLI GKGCMC 1 cut(s) 994
BstV1I GCAGC 3 cut(s) 85, 89, 1162
BstV2I GAAGAC 1 cut(s) 376
BsuI GTATCC 3 cut(s) 590, 623, 674
BsuRI GGCC 3 cut(s) 570, 977, 1208
BtgI CCRYGG 1 cut(s) 564
BtrI CACGTC 1 cut(s) 971
BtsCI GGATG 5 cut(s) 369, 379, 559, 790, 806
BtsIMutI CAGTG 3 cut(s) 12, 691, 1060
Cac8I GCNNGC 4 cut(s) 96, 103, 504, 755
CaiI CAGNNNCTG 1 cut(s) 218
CciI TCATGA 1 cut(s) 204
CfoI GCGC 1 cut(s) 29
Cfr10I RCCGGY 2 cut(s) 770, 1001
Cfr13I GGNCC 3 cut(s) 568, 578, 976
CseI GACGC 2 cut(s) 423, 1159
Csp6I GTAC 2 cut(s) 856, 1012
CspAI ACCGGT 1 cut(s) 770
CviAII CATG 6 cut(s) 62, 205, 484, 754, 848, 916
CviQI GTAC 2 cut(s) 856, 1012
DdeI CTNAG 2 cut(s) 81, 282
DpnI GATC 3 cut(s) 231, 930, 1202
DpnII GATC 3 cut(s) 229, 928, 1200
DrdI GACNNNNNNGTC 1 cut(s) 1156
DseDI GACNNNNNNGTC 1 cut(s) 1156
EciI GGCGGA 1 cut(s) 566
Ecl136II GAGCTC 1 cut(s) 1225
Eco130I CCWWGG 4 cut(s) 171, 865, 1077, 1145
Eco24I GRGCYC 2 cut(s) 493, 1227
Eco32I GATATC 1 cut(s) 832
Eco47I GGWCC 1 cut(s) 578
Eco47III AGCGCT 1 cut(s) 28
Eco53kI GAGCTC 1 cut(s) 1225
Eco88I CYCGRG 3 cut(s) 980, 1025, 1154
EcoICRI GAGCTC 1 cut(s) 1225
EcoNI CCTNNNNNAGG 2 cut(s) 869, 1076
EcoO109I RGGNCCY 1 cut(s) 976
EcoRII CCWGG 1 cut(s) 39
EcoRV GATATC 1 cut(s) 832
EcoT14I CCWWGG 4 cut(s) 171, 865, 1077, 1145
EcoT38I GRGCYC 2 cut(s) 493, 1227
ErhI CCWWGG 4 cut(s) 171, 865, 1077, 1145
FaeI CATG 6 cut(s) 65, 208, 487, 757, 851, 919
FaqI GGGAC 1 cut(s) 947
FatI CATG 6 cut(s) 61, 204, 483, 753, 847, 915
FauNDI CATATG 2 cut(s) 508, 922
FblI GTMKAC 1 cut(s) 36
Fnu4HI GCNGC 5 cut(s) 78, 99, 321, 882, 1176
FokI GGATG 5 cut(s) 376, 386, 566, 777, 813
FriOI GRGCYC 2 cut(s) 493, 1227
Fsp4HI GCNGC 5 cut(s) 78, 99, 321, 882, 1176
GlaI GCGC 1 cut(s) 28
GluI GCNGC 5 cut(s) 78, 99, 321, 882, 1176
GsuI CTGGAG 2 cut(s) 552, 827
HaeII RGCGCY 1 cut(s) 30
HaeIII GGCC 3 cut(s) 570, 977, 1208
HapII CCGG 3 cut(s) 771, 1002, 1161
HgaI GACGC 2 cut(s) 423, 1159
HhaI GCGC 1 cut(s) 29
Hin1I GRCGYC 1 cut(s) 1151
Hin1II CATG 6 cut(s) 65, 208, 487, 757, 851, 919
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HindIII AAGCTT 1 cut(s) 605
HinfI GANTC 6 cut(s) 83, 286, 458, 468, 1126, 1157
HpaII CCGG 3 cut(s) 771, 1002, 1161
HphI GGTGA 2 cut(s) 467, 785
Hpy166II GTNNAC 2 cut(s) 37, 907
Hpy188I TCNGA 4 cut(s) 252, 547, 643, 1141
Hpy188III TCNNGA 6 cut(s) 205, 239, 794, 982, 1025, 1161
Hpy8I GTNNAC 2 cut(s) 37, 907
HpyAV CCTTC 5 cut(s) 323, 596, 617, 742, 820
HpyCH4III ACNGT 4 cut(s) 7, 565, 686, 1051
HpyCH4IV ACGT 2 cut(s) 539, 970
HpyCH4V TGCA 4 cut(s) 101, 182, 483, 968
HpyF10VI GCNNNNNNNGC 6 cut(s) 218, 887, 974, 998, 1141, 1150
HpyF3I CTNAG 2 cut(s) 81, 282
HpySE526I ACGT 2 cut(s) 539, 970
Hsp92I GRCGYC 1 cut(s) 1151
Hsp92II CATG 6 cut(s) 65, 208, 487, 757, 851, 919
HspAI GCGC 1 cut(s) 27
Kpn2I TCCGGA 1 cut(s) 1160
Kzo9I GATC 3 cut(s) 229, 928, 1200
LmnI GCTCC 3 cut(s) 448, 496, 533
Lsp1109I GCAGC 3 cut(s) 85, 89, 1162
LweI GCATC 5 cut(s) 81, 169, 791, 899, 1100
MaeII ACGT 2 cut(s) 539, 970
MaeIII GTNAC 5 cut(s) 189, 688, 698, 773, 1168
MalI GATC 3 cut(s) 231, 930, 1202
MboI GATC 3 cut(s) 229, 928, 1200
MboII GAAGA 5 cut(s) 376, 632, 835, 1135, 1195
MfeI CAATTG 1 cut(s) 111
MhlI GDGCHC 4 cut(s) 445, 493, 994, 1227
MluCI AATT 6 cut(s) 71, 111, 810, 898, 957, 1097
MlyI GAGTC 2 cut(s) 92, 1166
MroI TCCGGA 1 cut(s) 1160
MseI TTAA 8 cut(s) 137, 159, 294, 603, 705, 735, 837, 1188
MslI CAYNNNNRTG 3 cut(s) 563, 782, 795
MspA1I CMGCKG 1 cut(s) 80
MspI CCGG 3 cut(s) 771, 1002, 1161
MspR9I CCNGG 1 cut(s) 41
MunI CAATTG 1 cut(s) 111
Mva1269I GAATGC 1 cut(s) 417
MvaI CCWGG 1 cut(s) 41
MwoI GCNNNNNNNGC 6 cut(s) 218, 887, 974, 998, 1141, 1150
NdeI CATATG 2 cut(s) 508, 922
NdeII GATC 3 cut(s) 229, 928, 1200
NlaIII CATG 6 cut(s) 65, 208, 487, 757, 851, 919
NlaIV GGNNCC 3 cut(s) 12, 169, 492
NmuCI GTSAC 1 cut(s) 773
NspI RCATGY 1 cut(s) 757
NspV TTCGAA 2 cut(s) 69, 1110
OliI CACNNNNGTG 1 cut(s) 563
PaeI GCATGC 1 cut(s) 757
PaeR7I CTCGAG 1 cut(s) 980
PagI TCATGA 1 cut(s) 204
PctI GAATGC 1 cut(s) 417
PfeI GAWTC 4 cut(s) 286, 458, 468, 1126
PinAI ACCGGT 1 cut(s) 770
PkrI GCNGC 5 cut(s) 79, 100, 322, 883, 1177
PleI GAGTC 2 cut(s) 91, 1165
PpsI GAGTC 2 cut(s) 91, 1165
Psp124BI GAGCTC 1 cut(s) 1227
Psp6I CCWGG 1 cut(s) 39
PspGI CCWGG 1 cut(s) 39
PspN4I GGNNCC 3 cut(s) 12, 169, 492
PspPI GGNCC 3 cut(s) 568, 578, 976
PstI CTGCAG 1 cut(s) 103
PstNI CAGNNNCTG 1 cut(s) 218
PvuII CAGCTG 1 cut(s) 80
RsaI GTAC 2 cut(s) 857, 1013
RsaNI GTAC 2 cut(s) 856, 1012
RseI CAYNNNNRTG 3 cut(s) 563, 782, 795
SacI GAGCTC 1 cut(s) 1227
SaqAI TTAA 8 cut(s) 137, 159, 294, 603, 705, 735, 837, 1188
SatI GCNGC 5 cut(s) 78, 99, 321, 882, 1176
Sau3AI GATC 3 cut(s) 229, 928, 1200
Sau96I GGNCC 3 cut(s) 568, 578, 976
SchI GAGTC 2 cut(s) 92, 1166
ScrFI CCNGG 1 cut(s) 41
SduI GDGCHC 4 cut(s) 445, 493, 994, 1227
SfaNI GCATC 5 cut(s) 81, 169, 791, 899, 1100
SfcI CTRYAG 2 cut(s) 99, 324
Sfr274I CTCGAG 1 cut(s) 980
SfuI TTCGAA 2 cut(s) 69, 1110
SinI GGWCC 1 cut(s) 578
SlaI CTCGAG 1 cut(s) 980
SmiMI CAYNNNNRTG 3 cut(s) 563, 782, 795
SmlI CTYRAG 1 cut(s) 980
SmoI CTYRAG 1 cut(s) 980
SphI GCATGC 1 cut(s) 757
Sse9I AATT 6 cut(s) 71, 111, 810, 898, 957, 1097
SsiI CCGC 3 cut(s) 320, 551, 881
SspI AATATT 1 cut(s) 478
SstI GAGCTC 1 cut(s) 1227
StyD4I CCNGG 1 cut(s) 39
StyI CCWWGG 4 cut(s) 171, 865, 1077, 1145
TaaI ACNGT 4 cut(s) 7, 565, 686, 1051
TaiI ACGT 2 cut(s) 542, 973
TaqI TCGA 5 cut(s) 69, 238, 981, 1094, 1110
TasI AATT 6 cut(s) 71, 111, 810, 898, 957, 1097
TatI WGTACW 2 cut(s) 855, 1011
TauI GCSGC 2 cut(s) 323, 884
TfiI GAWTC 4 cut(s) 286, 458, 468, 1126
Tru1I TTAA 8 cut(s) 137, 159, 294, 603, 705, 735, 837, 1188
Tru9I TTAA 8 cut(s) 137, 159, 294, 603, 705, 735, 837, 1188
TscAI CASTG 3 cut(s) 12, 691, 1060
TseFI GTSAC 1 cut(s) 773
TseI GCWGC 3 cut(s) 77, 98, 1175
Tsp45I GTSAC 1 cut(s) 773
TspDTI ATGAA 3 cut(s) 460, 779, 1196
TspRI CASTG 3 cut(s) 12, 691, 1060
VpaK11BI GGWCC 1 cut(s) 578
XagI CCTNNNNNAGG 2 cut(s) 869, 1076
XceI RCATGY 1 cut(s) 757
XhoI CTCGAG 1 cut(s) 980
XmiI GTMKAC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.