Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002434

Physical Location & Seq

Genomic Coordinates Forward (+)

69475432 .. 69483057

Gene Structure 7626 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020855

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3399 bp

ATGGGTCTATTATCCAAAACAGTTGTTATTCAAGAGACTCACGTCATCAATGACAAGCAGGTTGAGATAAAGAGAACCATTCCAAAAGGTGCCGGACAAGCTAATGATTTCAAAACTAAGAAAGTTTTTGTAGGCGGGATTCCCAGAACTGTTACAGAAGATGAATTGAAAGATTTCTTTTCAAAGTATGGTAATGTAGAGGAGCATCAGATCATACGCGAGCATGCCACTAACCGCTCTCGAGGGTTTGGATTTGTTGTATTTGAGAGCGAAAAAGTTGTTGATAATTTGCTGGCAAATGGAAATAAAATTGATATGGATGGAACACAGGTTGAGATCAAGAAGGCTGAACCGAAGAAGGCCTCAAACCCCGCTCATGTTCCTGCCTTCAGTAGAGACTCTAGGGCACCCCCATACCATGCTAGTTATGATTTAGTCGGCAACACATATAGTGGTTATGGCCCTGGTGGTTATGGCCTTCCTTCTTATGGCCCTCCTTCCTATAGGTCACATGGAGAATTTGGCAATAGGTTTGATGATTACAATGGTTATTCAGATGCTAATGATGTTGGTGTTGGTTTTGAGGGTCTCAGAGGTGGTCCTTTTCCTGGTTATCATGGAGATTCTTCATTCGGGTATCCTAGTAGATTTTCATCCTATCGTGGAGGGCTTGGTGGGGGATATGGTGGTAGCGGGTTAGGTGCATATGGGCGTGAAGCTAGGGGCTATGGAAGTTATGCTGGGTCAGGCTCAGGTGATGGTTATGATTCAGGCCCTGGTGCTAGTTATGAAGGACCGCGAGGCTTGTACGGTGCTAGTAGGGCAGGATATGGTGGCAGTAGTCGTTACCACCCTTATGGAAGGAGGCCCATAGTGCCTAAGCGAAATGCTAACGCCAATGTGCACATGAGTGATACCAAGGAAAACTGCGTAGCCCTAGAGACGGTAATGCTGTCCTTTAGCCAGAGAAGTATCCACTCCATATTAGAATTTTTGCAAGATGAGGATTGCTGCATTTCAATTCCACTGGGTTTTGAATTAGAATTCCTGAAGGACAATTCACAGTTGTCTTCCAAGATGAGGATAATCACAATTGCAGACTGCTTCCAAGTGGTTGAGGATCAACAAGCTCTCATCACACACACACACACACAGGGACGAGCTCAGTTTTTCTCGGACGATCCTAATCCTAGTTTTGAAGCAACAGTGATGGAGGATTCTGAAGGGAGCGTCTTGAACTCACCGGTTGAAGAAAACTTGGGTGCTAGTGATCACTTGTCAATTCTGAAAGGCTATGGAGCATTTGGGATATTGGGTGCTGTTATTATTGCCCTACTTGTACCTGTGTTGCTGTCAACTGTGTTCCTGGGAAAGAAAAGGAAGCAACGAGGAGTTCCCGTGCAAGTTGGTGGTGAGGAAGGTTATGCAATGCGCAACATTCGTGTTACTGACTTGATTGAATCTCCTCATAAAGACGCAACAACTGTGCCAGCCTTGTTTGAGCAATCTTGTGAAAAGTACGCACAGAATCAGTTCCTTGGAACCAGGAAGTTGATTGGAAGGGAATTTGTCACAGCTAGCAATGGCAGGAAGTTTGAGAAACTTCACTTAGGAGATTATGAATGGCAAACTTACAGACAAGTCTTTGATCGTGCTTGCAACTTTGCATCTGGCCTTATTAAGCTAGGTCATAATGTGGATACCCGTGCTGCAATTTTTGCTGACACCTGCGCGGAGTGGTTTGTAACCTTTCAGGGGTGCTTCCGGCAGAATATTACTGTTGTTACAATCTATTCTTCCCTAGGTGAGGATGCCCTAATCCACTCGCTTAATGAGACTCAAGTATCAACATTGATCTGTGATTCAAAGCTGTTGAAGAAGCTGGCTTCCATAAGCTCAAGGCTAAATAGCATAAAAAATGTAATTTATTTTGAAGACGAGGGAAGTTCAGATGCTAAAGGATGTGAAAGTAATAGCAATTGGACAGTCAGATCCATTTCTGAAGTTGAGAAACTTGGACAAGAAAATCCTGTTCATCCACGTTTACCTTCTAAGAATGACATCGCTGTTATCATGTATACGAGCGGCAGTACAGGTCTACCAAAGGGGGTCATGATAACTCATGGCAATATTGTAGCCACTACGGCAGCTGTTACGACACTGATTCCAAGTCTGGGTAGCACTGATGCATACTTAGCATACTTGCCCTTAGCTCATGTTTTTGAATTGGCCGCAGAGTCTGTGATGATGGCTTCAGGTGTTAAAGTTGGTTATGGTTCAGCATTGACTTTAACAGACACTTCAAATAAAATTAAGAAAGGAACCAAGGGGGATGTTTCTATGTTAAAGCCGACTCTCATGACTACAGTTCCTGCTATTATAGATCGTATTCGTGATGCAGTTTTTAAAAAGGTTGAGGAGAAAGGGGGGATAGCGAAGAACCTTTTTGACATTGGATTTAAACGGCGACTGGCTGCTGTAGAAGGAAGCTGGTTTGGTGCTTGGGGTCTGGAAAAATGGTTTTGGGATAATTTTGTCTTTAAAGTTATACGTCTAGGGCTGGGAGGGCGCATTCGGTTTATGATCTGTGGTGGAGCTCCTTTATCTGCTGATTCACAACGATTCATCAATATCTGCATGGGTGCTCCAATCGGGCAAGCATATGGCTTGACAGAAACATTTGCTGGAGCTACATTTTCTGAGTGGGATGACACAGCAGTGGGCCGTGTTGGCCCACCATTGCCTTGTTGCTACATTAAGCTTGTTTCTTGGAAAGAAGGTGGATACTTGGCATCTGACAAGCCAATGCCTCGTGGGGAGATTGTAATTGGGGGACCCTGTGTAACTGCTGGGTACTTCAAGAATCAAGAAAAGACTGACGAGGTCTACAAGGTTGACGAGAATGGCATGCGCTGGTTTTATACTGGTGACATTGGAATGTTTCATCTTGATGGATGCCTTGAAATTATAGATAGGAAGAAGGATATCGTTAAACTCCAGCATGGAGAATACATCTCCCTCGGAAAGGTGGAGGCAGCATTGATAAACAGTAATTATGTGGACAATATCATGGTATTTGCAGACCCCTTCCACAACTACTGTGTAGCTGTAGTTGTCCCTGTGCGTCAAGCCCTGGAGCAGTGGGCTCAGGGAGCTGGAATCAAGTACAATGATTTTTCTGAGCTGTGTGGAAAAGCTGAAGCAGTTAGTGAGGTCCAGCAATCCCTCTCCAAGGTAGCAAAAGAAGCAAAATTGGACAAGTTTGAACTTCCTGGAAAGATTTATTTGGCGCCTGATCCATGGACACCTGAATCCGGATTGGTTACTGCTGCTCTCAAGATCAAGAGGGAACAGATCAAGTCCAAGTTCAAAAGTGACATTGAGAAGTTGTATGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0031967 GO:0031975 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

1133

Amino Acids

123.76

Weight (kDa)

6.57

Isoelectric Point (pI)

27.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_7	PF16367	40 - 103	1.4e-09	RNA recognition motif
RRM_1	PF00076	42 - 111	4.1e-17	RNA recognition motif
AMP-binding	PF00501	533 - 953	3.3e-86	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04350 AT2G04350
fragaria_vesca	FvH4_6g40470 FvH4_6g40470 FvH4_6g40470 FvH4_6g40470 FvH4_6g40470 FvH4_6g40470 FvH4_6g40470 FvH4_6g40470
malus_domestica	MD09G1129700.v1.1 MD17G1118500.v1.1
prunus_persica	Prupe.3G195600_v2.0.a1 Prupe.3G195600_v2.0.a1 Prupe.3G195600_v2.0.a1 Prupe.3G195600_v2.0.a1
pyrus_communis	pycom09g05270 pycom17g10890
rosa_chinensis	RchiOBHm_Chr2g0155701 RchiOBHm_Chr2g0155721
rosa_laevigata	RLG00000020855 RLG00000020857 RLG00000020858
rosa_multiflora	Rmu_co8272995.1_g000001 Rmu_co8427559.1_g000001 Rmu_sc0002712.1_g000001 Rmu_sc0011953.1_g000003 Rmu_sc0011953.1_g000015
rosa_roxburghii	Rroxscaffold_2G00093540
rosa_rugosa	Rorug02G0449500
rosa_samantha	Rh2AG515400 Rh2AG515500 Rh2BG526400 Rh2BG526500 Rh2CG500300 Rh2CG500500 Rh2DG535300 Rh2DG535500
rosa_wichuraiana	Rw2G042360 Rw2G042370 Rw2G042390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1736
Acc16I	TGCGCA	1 cut(s)	1433
Acc36I	ACCTGC	2 cut(s)	49, 1736
AccB1I	GGYRCC	3 cut(s)	89, 406, 3289
AccBSI	CCGCTC	3 cut(s)	237, 374, 2085
AccI	GTMKAC	3 cut(s)	2078, 2098, 2886
AccII	CGCG	3 cut(s)	219, 799, 1733
AccIII	TCCGGA	1 cut(s)	3314
AciI	CCGC	8 cut(s)	135, 235, 372, 693, 797, 1733, 2085, 2232
AclWI	GGATC	4 cut(s)	1128, 1175, 1986, 3290
AcoI	YGGCCR	1 cut(s)	2229
AcsI	RAATTY	4 cut(s)	518, 989, 1043, 1565
AcuI	CTGAAG	6 cut(s)	373, 1070, 1242, 2022, 2238, 3219
AcyI	GRCGYC	1 cut(s)	3290
AfaI	GTAC	6 cut(s)	809, 1341, 1520, 2092, 2855, 3167
AgeI	ACCGGT	1 cut(s)	1243
AjiI	CACGTC	1 cut(s)	43
AjnI	CCWGG	7 cut(s)	463, 607, 775, 1365, 1544, 3132, 3271
AleI	CACNNNNGTG	2 cut(s)	909, 2717
Alw21I	GWGCWC	4 cut(s)	906, 1165, 2599, 2647
Alw26I	GTCTC	5 cut(s)	29, 390, 593, 935, 1829
Alw44I	GTGCAC	1 cut(s)	902
AlwI	GGATC	4 cut(s)	1128, 1175, 1986, 3290
AlwNI	CAGNNNCTG	3 cut(s)	776, 2240, 2372
Ama87I	CYCGRG	1 cut(s)	240
Aor13HI	TCCGGA	1 cut(s)	3314
ApaLI	GTGCAC	1 cut(s)	902
ApeKI	GCWGC	6 cut(s)	1011, 1709, 2147, 2474, 3035, 3329
ApoI	RAATTY	4 cut(s)	518, 989, 1043, 1565
AsiGI	ACCGGT	1 cut(s)	1243
Asp700I	GAANNNNTTC	2 cut(s)	173, 1532
AspA2I	CCTAGG	1 cut(s)	1801
AspLEI	GCGC	5 cut(s)	1434, 1733, 2571, 2913, 3292
AsuHPI	GGTGA	5 cut(s)	767, 1233, 1424, 1817, 2939
AsuNHI	GCTAGC	1 cut(s)	1577
AvaI	CYCGRG	1 cut(s)	240
AvaII	GGWCC	4 cut(s)	599, 794, 2834, 3214
AvrII	CCTAGG	1 cut(s)	1801
BaeGI	GKGCMC	2 cut(s)	409, 906
BaeI	ACNNNNGTAYC	2 cut(s)	1827, 1860
BanI	GGYRCC	3 cut(s)	89, 406, 3289
BanII	GRGCYC	3 cut(s)	1165, 2599, 3148
BauI	CACGAG	1 cut(s)	2811
BbsI	GAAGAC	2 cut(s)	1062, 1941
Bbv12I	GWGCWC	4 cut(s)	906, 1165, 2599, 2647
BbvI	GCAGC	6 cut(s)	998, 1696, 2159, 2461, 3047, 3316
BccI	CCATC	5 cut(s)	314, 752, 1204, 2242, 2945
BceAI	ACGGC	3 cut(s)	2160, 2480, 2709
BciT130I	CCWGG	7 cut(s)	465, 609, 777, 1367, 1546, 3134, 3273
BciVI	GTATCC	4 cut(s)	648, 983, 1693, 2777
BclI	TGATCA	1 cut(s)	1270
BcoDI	GTCTC	5 cut(s)	29, 390, 593, 935, 1829
BfmI	CTRYAG	4 cut(s)	502, 2364, 2478, 3108
BfoI	RGCGCY	1 cut(s)	3293
BfuAI	ACCTGC	2 cut(s)	49, 1736
BfuI	GTATCC	4 cut(s)	648, 983, 1693, 2777
BglI	GCCNNNNNGGC	2 cut(s)	2144, 2730
BisI	GCNGC	8 cut(s)	1012, 1710, 2086, 2148, 2232, 2475, 3036, 3330
BlnI	CCTAGG	1 cut(s)	1801
BlsI	GCNGC	8 cut(s)	1013, 1711, 2087, 2149, 2233, 2476, 3037, 3331
Bme1390I	CCNGG	7 cut(s)	465, 609, 777, 1367, 1546, 3134, 3273
Bme18I	GGWCC	4 cut(s)	599, 794, 2834, 3214
BmeT110I	CYCGRG	1 cut(s)	240
BmgBI	CACGTC	1 cut(s)	43
BmiI	GGNNCC	7 cut(s)	91, 408, 1543, 2323, 2835, 2836, 3291
BmrFI	CCNGG	7 cut(s)	465, 609, 777, 1367, 1546, 3134, 3273
BmrI	ACTGGG	1 cut(s)	1037
BmsI	GCATC	9 cut(s)	214, 547, 1676, 1801, 1942, 2176, 2386, 2801, 2945
BmtI	GCTAGC	1 cut(s)	1581
BmuI	ACTGGG	1 cut(s)	1037
BoxI	GACNNNNGTC	1 cut(s)	41
BpiI	GAAGAC	2 cut(s)	1062, 1941
BpmI	CTGGAG	3 cut(s)	2706, 2981, 3155
Bpu10I	CCTNAGC	4 cut(s)	751, 879, 2209, 3147
BpuEI	CTTGAG	3 cut(s)	1824, 1882, 3320
BsaBI	GATNNNNATC	2 cut(s)	652, 1185
BsaHI	GRCGYC	1 cut(s)	3290
BsaI	GGTCTC	1 cut(s)	593
BsaWI	WCCGGW	2 cut(s)	1243, 3314
BsaXI	ACNNNNNCTCC	2 cut(s)	1383, 1413
Bse118I	RCCGGY	1 cut(s)	1243
Bse1I	ACTGG	3 cut(s)	1032, 2475, 2929
Bse3DI	GCAATG	3 cut(s)	1434, 1588, 2738
Bse8I	GATNNNNATC	2 cut(s)	652, 1185
BseAI	TCCGGA	1 cut(s)	3314
BseBI	CCWGG	7 cut(s)	465, 609, 777, 1367, 1546, 3134, 3273
BseGI	GGATG	8 cut(s)	325, 653, 1816, 1967, 2035, 2338, 2713, 2960
BseJI	GATNNNNATC	2 cut(s)	652, 1185
BseMI	GCAATG	3 cut(s)	1434, 1588, 2738
BseMII	CTCAG	6 cut(s)	604, 765, 1178, 2691, 3161, 3171
BseNI	ACTGG	3 cut(s)	1032, 2475, 2929
BseRI	GAGGAG	4 cut(s)	215, 1404, 1455, 2432
BseSI	GKGCMC	2 cut(s)	409, 906
BseXI	GCAGC	6 cut(s)	998, 1696, 2159, 2461, 3047, 3316
BseYI	CCCAGC	3 cut(s)	740, 2560, 2849
Bsh1236I	CGCG	3 cut(s)	219, 799, 1733
BshNI	GGYRCC	3 cut(s)	89, 406, 3289
BshTI	ACCGGT	1 cut(s)	1243
BsiHKAI	GWGCWC	4 cut(s)	906, 1165, 2599, 2647
BsiHKCI	CYCGRG	1 cut(s)	240
BsiSI	CCGG	4 cut(s)	93, 1244, 1765, 3315
BslFI	GGGAC	3 cut(s)	1170, 2847, 3101
BsmAI	GTCTC	5 cut(s)	29, 390, 593, 935, 1829
BsmBI	CGTCTC	1 cut(s)	935
BsmFI	GGGAC	3 cut(s)	1170, 2847, 3101
BsmI	GAATGC	1 cut(s)	2571
Bso31I	GGTCTC	1 cut(s)	593
BsoBI	CYCGRG	1 cut(s)	240
Bsp1286I	GDGCHC	6 cut(s)	409, 906, 1165, 2599, 2647, 3148
Bsp13I	TCCGGA	1 cut(s)	3314
Bsp19I	CCATGG	1 cut(s)	3299
BspACI	CCGC	8 cut(s)	135, 235, 372, 693, 797, 1733, 2085, 2232
BspCNI	CTCAG	6 cut(s)	603, 764, 1177, 2692, 3160, 3172
BspEI	TCCGGA	1 cut(s)	3314
BspFNI	CGCG	3 cut(s)	219, 799, 1733
BspHI	TCATGA	2 cut(s)	2112, 2358
BspLI	GGNNCC	7 cut(s)	91, 408, 1543, 2323, 2835, 2836, 3291
BspMI	ACCTGC	2 cut(s)	49, 1736
BspOI	GCTAGC	1 cut(s)	1581
BspPI	GGATC	4 cut(s)	1128, 1175, 1986, 3290
BspT107I	GGYRCC	3 cut(s)	89, 406, 3289
BspTNI	GGTCTC	1 cut(s)	593
BsrBI	CCGCTC	3 cut(s)	237, 374, 2085
BsrDI	GCAATG	3 cut(s)	1434, 1588, 2738
BsrFI	RCCGGY	1 cut(s)	1243
BsrI	ACTGG	3 cut(s)	1032, 2475, 2929
BssAI	RCCGGY	1 cut(s)	1243
BssNAI	GTATAC	1 cut(s)	2079
BssNI	GRCGYC	1 cut(s)	3290
BssSI	CACGAG	1 cut(s)	2811
BssT1I	CCWWGG	6 cut(s)	918, 1537, 1801, 2325, 3231, 3299
Bst1107I	GTATAC	1 cut(s)	2079
Bst2BI	CACGAG	1 cut(s)	2811
Bst2UI	CCWGG	7 cut(s)	465, 609, 777, 1367, 1546, 3134, 3273
BstACI	GRCGYC	1 cut(s)	3290
BstAPI	GCANNNNNTGC	1 cut(s)	1718
BstC8I	GCNNGC	9 cut(s)	221, 225, 294, 1491, 1579, 1657, 1884, 2658, 2909
BstDSI	CCRYGG	1 cut(s)	3299
BstENI	CCTNNNNNAGG	3 cut(s)	1805, 3023, 3230
BstF5I	GGATG	8 cut(s)	325, 653, 1816, 1967, 2035, 2338, 2713, 2960
BstFNI	CGCG	3 cut(s)	219, 799, 1733
BstH2I	RGCGCY	1 cut(s)	3293
BstHHI	GCGC	5 cut(s)	1434, 1733, 2571, 2913, 3292
BstMAI	GTCTC	5 cut(s)	29, 390, 593, 935, 1829
BstNI	CCWGG	7 cut(s)	465, 609, 777, 1367, 1546, 3134, 3273
BstNSI	RCATGY	2 cut(s)	227, 2911
BstPAI	GACNNNNGTC	1 cut(s)	41
BstSCI	CCNGG	7 cut(s)	463, 607, 775, 1365, 1544, 3132, 3271
BstSFI	CTRYAG	4 cut(s)	502, 2364, 2478, 3108
BstSLI	GKGCMC	2 cut(s)	409, 906
BstUI	CGCG	3 cut(s)	219, 799, 1733
BstV1I	GCAGC	6 cut(s)	998, 1696, 2159, 2461, 3047, 3316
BstV2I	GAAGAC	2 cut(s)	1062, 1941
BstX2I	RGATCY	1 cut(s)	1991
BstXI	CCANNNNNNTGG	1 cut(s)	857
BstYI	RGATCY	1 cut(s)	1991
BstZ17I	GTATAC	1 cut(s)	2079
BsuI	GTATCC	4 cut(s)	648, 983, 1693, 2777
BtgI	CCRYGG	1 cut(s)	3299
BtgZI	GCGATG	1 cut(s)	2047
BtrI	CACGTC	1 cut(s)	43
BtsCI	GGATG	8 cut(s)	325, 653, 1816, 1967, 2035, 2338, 2713, 2960
BtsI	GCAGTG	2 cut(s)	2724, 3146
BtsIMutI	CAGTG	6 cut(s)	1025, 1212, 2159, 2181, 2724, 3146
BveI	ACCTGC	2 cut(s)	49, 1736
Cac8I	GCNNGC	9 cut(s)	221, 225, 294, 1491, 1579, 1657, 1884, 2658, 2909
CaiI	CAGNNNCTG	3 cut(s)	776, 2240, 2372
CciI	TCATGA	2 cut(s)	2112, 2358
CfoI	GCGC	5 cut(s)	1434, 1733, 2571, 2913, 3292
Cfr10I	RCCGGY	1 cut(s)	1243
CseI	GACGC	3 cut(s)	1219, 1484, 3113
Csp6I	GTAC	6 cut(s)	808, 1340, 1519, 2091, 2854, 3166
CspAI	ACCGGT	1 cut(s)	1243
CviQI	GTAC	6 cut(s)	808, 1340, 1519, 2091, 2854, 3166
DinI	GGCGCC	1 cut(s)	3291
DraI	TTTAAA	3 cut(s)	2407, 2461, 2542
EaeI	YGGCCR	1 cut(s)	2229
Ecl136II	GAGCTC	2 cut(s)	1163, 2597
Eco130I	CCWWGG	6 cut(s)	918, 1537, 1801, 2325, 3231, 3299
Eco147I	AGGCCT	1 cut(s)	362
Eco24I	GRGCYC	3 cut(s)	1165, 2599, 3148
Eco31I	GGTCTC	1 cut(s)	593
Eco32I	GATATC	1 cut(s)	2986
Eco47I	GGWCC	4 cut(s)	599, 794, 2834, 3214
Eco53kI	GAGCTC	2 cut(s)	1163, 2597
Eco57I	CTGAAG	6 cut(s)	373, 1070, 1242, 2022, 2238, 3219
Eco88I	CYCGRG	1 cut(s)	240
EcoICRI	GAGCTC	2 cut(s)	1163, 2597
EcoNI	CCTNNNNNAGG	3 cut(s)	1805, 3023, 3230
EcoO109I	RGGNCCY	2 cut(s)	773, 2834
EcoRI	GAATTC	1 cut(s)	1043
EcoRII	CCWGG	7 cut(s)	463, 607, 775, 1365, 1544, 3132, 3271
EcoRV	GATATC	1 cut(s)	2986
EcoT14I	CCWWGG	6 cut(s)	918, 1537, 1801, 2325, 3231, 3299
EcoT22I	ATGCAT	1 cut(s)	2191
EcoT38I	GRGCYC	3 cut(s)	1165, 2599, 3148
EgeI	GGCGCC	1 cut(s)	3291
EheI	GGCGCC	1 cut(s)	3291
ErhI	CCWWGG	6 cut(s)	918, 1537, 1801, 2325, 3231, 3299
Esp3I	CGTCTC	1 cut(s)	935
FaqI	GGGAC	3 cut(s)	1170, 2847, 3101
FauI	CCCGC	3 cut(s)	128, 379, 686
FauNDI	CATATG	2 cut(s)	706, 2662
FbaI	TGATCA	1 cut(s)	1270
FblI	GTMKAC	3 cut(s)	2078, 2098, 2886
Fnu4HI	GCNGC	8 cut(s)	1012, 1710, 2086, 2148, 2232, 2475, 3036, 3330
FokI	GGATG	8 cut(s)	332, 640, 1823, 1974, 2022, 2345, 2720, 2967
FriOI	GRGCYC	3 cut(s)	1165, 2599, 3148
Fsp4HI	GCNGC	8 cut(s)	1012, 1710, 2086, 2148, 2232, 2475, 3036, 3330
FspI	TGCGCA	1 cut(s)	1433
GlaI	GCGC	5 cut(s)	1433, 1732, 2570, 2912, 3291
GluI	GCNGC	8 cut(s)	1012, 1710, 2086, 2148, 2232, 2475, 3036, 3330
GsaI	CCCAGC	3 cut(s)	744, 2564, 2853
GsuI	CTGGAG	3 cut(s)	2706, 2981, 3155
HaeII	RGCGCY	1 cut(s)	3293
HapII	CCGG	4 cut(s)	93, 1244, 1765, 3315
HgaI	GACGC	3 cut(s)	1219, 1484, 3113
HhaI	GCGC	5 cut(s)	1434, 1733, 2571, 2913, 3292
Hin1I	GRCGYC	1 cut(s)	3290
Hin6I	GCGC	5 cut(s)	1432, 1731, 2569, 2911, 3290
HinP1I	GCGC	5 cut(s)	1432, 1731, 2569, 2911, 3290
HincII	GTYRAC	2 cut(s)	1356, 2896
HindII	GTYRAC	2 cut(s)	1356, 2896
HindIII	AAGCTT	1 cut(s)	2759
HpaII	CCGG	4 cut(s)	93, 1244, 1765, 3315
HphI	GGTGA	5 cut(s)	767, 1233, 1424, 1817, 2939
Hpy166II	GTNNAC	8 cut(s)	904, 1356, 2045, 2079, 2099, 2887, 2896, 3061
Hpy8I	GTNNAC	8 cut(s)	904, 1356, 2045, 2079, 2099, 2887, 2896, 3061
HpyCH4IV	ACGT	3 cut(s)	42, 2041, 2551
HpySE526I	ACGT	3 cut(s)	42, 2041, 2551
Hsp92I	GRCGYC	1 cut(s)	3290
HspAI	GCGC	5 cut(s)	1432, 1731, 2569, 2911, 3290
KasI	GGCGCC	1 cut(s)	3289
KflI	GGGWCCC	1 cut(s)	2834
Kpn2I	TCCGGA	1 cut(s)	3314
Ksp22I	TGATCA	1 cut(s)	1270
LmnI	GCTCC	9 cut(s)	202, 1227, 1298, 2594, 2602, 2650, 2687, 3136, 3152
Lsp1109I	GCAGC	6 cut(s)	998, 1696, 2159, 2461, 3047, 3316
LweI	GCATC	9 cut(s)	214, 547, 1676, 1801, 1942, 2176, 2386, 2801, 2945
MaeII	ACGT	3 cut(s)	42, 2041, 2551
MbiI	CCGCTC	3 cut(s)	237, 374, 2085
MfeI	CAATTG	2 cut(s)	1092, 1978
MflI	RGATCY	1 cut(s)	1991
MhlI	GDGCHC	6 cut(s)	409, 906, 1165, 2599, 2647, 3148
Mly113I	GGCGCC	1 cut(s)	3290
MlyI	GAGTC	5 cut(s)	31, 392, 1831, 2246, 2347
Mph1103I	ATGCAT	1 cut(s)	2191
MroI	TCCGGA	1 cut(s)	3314
MroXI	GAANNNNTTC	2 cut(s)	173, 1532
MslI	CAYNNNNRTG	5 cut(s)	855, 909, 2717, 2936, 2949
MspA1I	CMGCKG	1 cut(s)	2150
MspI	CCGG	4 cut(s)	93, 1244, 1765, 3315
MspR9I	CCNGG	7 cut(s)	465, 609, 777, 1367, 1546, 3134, 3273
MunI	CAATTG	2 cut(s)	1092, 1978
Mva1269I	GAATGC	1 cut(s)	2571
MvaI	CCWGG	7 cut(s)	465, 609, 777, 1367, 1546, 3134, 3273
MvnI	CGCG	3 cut(s)	219, 799, 1733
NarI	GGCGCC	1 cut(s)	3290
NcoI	CCATGG	1 cut(s)	3299
NdeI	CATATG	2 cut(s)	706, 2662
NheI	GCTAGC	1 cut(s)	1577
NlaIV	GGNNCC	7 cut(s)	91, 408, 1543, 2323, 2835, 2836, 3291
NmuCI	GTSAC	4 cut(s)	507, 1570, 2927, 3374
NsbI	TGCGCA	1 cut(s)	1433
NsiI	ATGCAT	1 cut(s)	2191
NspI	RCATGY	2 cut(s)	227, 2911
OliI	CACNNNNGTG	2 cut(s)	909, 2717
PaeI	GCATGC	2 cut(s)	227, 2911
PaeR7I	CTCGAG	1 cut(s)	240
PagI	TCATGA	2 cut(s)	2112, 2358
PaqCI	CACCTGC	1 cut(s)	1736
PceI	AGGCCT	1 cut(s)	362
PctI	GAATGC	1 cut(s)	2571
PdmI	GAANNNNTTC	2 cut(s)	173, 1532
PflFI	GACNNNGTC	1 cut(s)	2882
PfoI	TCCNGGA	1 cut(s)	3271
PinAI	ACCGGT	1 cut(s)	1243
PkrI	GCNGC	8 cut(s)	1013, 1711, 2087, 2149, 2233, 2476, 3037, 3331
PleI	GAGTC	5 cut(s)	31, 392, 1831, 2245, 2347
PluTI	GGCGCC	1 cut(s)	3293
PpsI	GAGTC	5 cut(s)	31, 392, 1831, 2245, 2347
PpuMI	RGGWCCY	1 cut(s)	2834
PshAI	GACNNNNGTC	1 cut(s)	41
Psp124BI	GAGCTC	2 cut(s)	1165, 2599
Psp5II	RGGWCCY	1 cut(s)	2834
Psp6I	CCWGG	7 cut(s)	463, 607, 775, 1365, 1544, 3132, 3271
PspFI	CCCAGC	3 cut(s)	740, 2560, 2849
PspGI	CCWGG	7 cut(s)	463, 607, 775, 1365, 1544, 3132, 3271
PspN4I	GGNNCC	7 cut(s)	91, 408, 1543, 2323, 2835, 2836, 3291
PspPPI	RGGWCCY	1 cut(s)	2834
PstNI	CAGNNNCTG	3 cut(s)	776, 2240, 2372
PsuI	RGATCY	1 cut(s)	1991
PsyI	GACNNNGTC	1 cut(s)	2882
PvuII	CAGCTG	1 cut(s)	2150
RsaI	GTAC	6 cut(s)	809, 1341, 1520, 2092, 2855, 3167
RsaNI	GTAC	6 cut(s)	808, 1340, 1519, 2091, 2854, 3166
RseI	CAYNNNNRTG	5 cut(s)	855, 909, 2717, 2936, 2949
SacI	GAGCTC	2 cut(s)	1165, 2599
SatI	GCNGC	8 cut(s)	1012, 1710, 2086, 2148, 2232, 2475, 3036, 3330
SchI	GAGTC	5 cut(s)	31, 392, 1831, 2246, 2347
ScrFI	CCNGG	7 cut(s)	465, 609, 777, 1367, 1546, 3134, 3273
SduI	GDGCHC	6 cut(s)	409, 906, 1165, 2599, 2647, 3148
SfaNI	GCATC	9 cut(s)	214, 547, 1676, 1801, 1942, 2176, 2386, 2801, 2945
SfcI	CTRYAG	4 cut(s)	502, 2364, 2478, 3108
SfiI	GGCCNNNNNGGCC	1 cut(s)	2730
SfoI	GGCGCC	1 cut(s)	3291
Sfr274I	CTCGAG	1 cut(s)	240
SinI	GGWCC	4 cut(s)	599, 794, 2834, 3214
SlaI	CTCGAG	1 cut(s)	240
SmiMI	CAYNNNNRTG	5 cut(s)	855, 909, 2717, 2936, 2949
SmlI	CTYRAG	4 cut(s)	240, 1839, 1897, 3335
SmoI	CTYRAG	4 cut(s)	240, 1839, 1897, 3335
SphI	GCATGC	2 cut(s)	227, 2911
SseBI	AGGCCT	1 cut(s)	362
SsiI	CCGC	8 cut(s)	135, 235, 372, 693, 797, 1733, 2085, 2232
SspDI	GGCGCC	1 cut(s)	3289
SspI	AATATT	2 cut(s)	1774, 2131
SstI	GAGCTC	2 cut(s)	1165, 2599
StuI	AGGCCT	1 cut(s)	362
StyD4I	CCNGG	7 cut(s)	463, 607, 775, 1365, 1544, 3132, 3271
StyI	CCWWGG	6 cut(s)	918, 1537, 1801, 2325, 3231, 3299
TaiI	ACGT	3 cut(s)	45, 2044, 2554
TaqI	TCGA	1 cut(s)	241
TatI	WGTACW	2 cut(s)	2090, 3165
TauI	GCSGC	2 cut(s)	2088, 2234
TscAI	CASTG	6 cut(s)	1032, 1212, 2166, 2188, 2724, 3146
TseFI	GTSAC	4 cut(s)	507, 1570, 2927, 3374
TseI	GCWGC	6 cut(s)	1011, 1709, 2147, 2474, 3035, 3329
Tsp45I	GTSAC	4 cut(s)	507, 1570, 2927, 3374
TspDTI	ATGAA	8 cut(s)	177, 618, 642, 804, 1635, 2024, 2614, 2933
TspRI	CASTG	6 cut(s)	1032, 1212, 2166, 2188, 2724, 3146
Tth111I	GACNNNGTC	1 cut(s)	2882
VneI	GTGCAC	1 cut(s)	902
VpaK11BI	GGWCC	4 cut(s)	599, 794, 2834, 3214
XagI	CCTNNNNNAGG	3 cut(s)	1805, 3023, 3230
XapI	RAATTY	4 cut(s)	518, 989, 1043, 1565
XceI	RCATGY	2 cut(s)	227, 2911
XhoI	CTCGAG	1 cut(s)	240
XmaJI	CCTAGG	1 cut(s)	1801
XmiI	GTMKAC	3 cut(s)	2078, 2098, 2886
XmnI	GAANNNNTTC	2 cut(s)	173, 1532
Zsp2I	ATGCAT	1 cut(s)	2191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.