Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8272995.1

Orthogroup ID

OG0002434

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 594

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8272995.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atggaggattctgaagggagcgtcttgaactcaccggttgaagaaaacttgggtgctagtgatcacttgtcaattctgaaaggctatggagcatttgggatattgggtgctgttattattgccctacttgtacctttgttgctgtcaactgtgttcctgggaaagaaaaggaagcaacgaggagttcccgtgcaagttggtggtgaggaaggttatgcaatgcgcaacattcgtgttactgacttgattgaaactcctcataaagaggcgacaactgtgccagccttgtttgagcaatcttgtgaaaagtacgcacagaatcagtttcttggaaccaggaagttgattggaagggaatttgtcacagctagcaatggcaagaagtttgagaaacttcacttaggagattatgaatggcaaacttacagacaagtctttgatcgtgcttgcaactttgcatctggccttattaagttaggtcataatgtggatacccgtgctgcaatttttgctgacacctgcgcagagtggtttataacctttcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0031967 GO:0031975 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

182

Amino Acids

20.19

Weight (kDa)

6.43

Isoelectric Point (pI)

32.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04350 AT2G04350
fragaria_vesca	FvH4_6g40470 FvH4_6g40470 FvH4_6g40470 FvH4_6g40470 FvH4_6g40470 FvH4_6g40470 FvH4_6g40470 FvH4_6g40470
malus_domestica	MD09G1129700.v1.1 MD17G1118500.v1.1
prunus_persica	Prupe.3G195600_v2.0.a1 Prupe.3G195600_v2.0.a1 Prupe.3G195600_v2.0.a1 Prupe.3G195600_v2.0.a1
pyrus_communis	pycom09g05270 pycom17g10890
rosa_chinensis	RchiOBHm_Chr2g0155701 RchiOBHm_Chr2g0155721
rosa_laevigata	RLG00000020855 RLG00000020857 RLG00000020858
rosa_multiflora	Rmu_co8272995.1_g000001 Rmu_co8427559.1_g000001 Rmu_sc0002712.1_g000001 Rmu_sc0011953.1_g000003 Rmu_sc0011953.1_g000015
rosa_roxburghii	Rroxscaffold_2G00093540
rosa_rugosa	Rorug02G0449500
rosa_samantha	Rh2AG515400 Rh2AG515500 Rh2BG526400 Rh2BG526500 Rh2CG500300 Rh2CG500500 Rh2DG535300 Rh2DG535500
rosa_wichuraiana	Rw2G042360 Rw2G042370 Rw2G042390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	536
AarI	CACCTGC	1 cut(s)	527
Acc16I	TGCGCA	2 cut(s)	224, 523
Acc36I	ACCTGC	1 cut(s)	527
AcsI	RAATTY	1 cut(s)	356
AcuI	CTGAAG	1 cut(s)	33
AfaI	GTAC	2 cut(s)	132, 311
AgeI	ACCGGT	1 cut(s)	34
AgsI	TTSAA	3 cut(s)	28, 41, 251
AjnI	CCWGG	2 cut(s)	156, 335
AluBI	AGCT	1 cut(s)	368
AluI	AGCT	1 cut(s)	368
AoxI	GGCC	1 cut(s)	463
ApeKI	GCWGC	1 cut(s)	500
ApoI	RAATTY	1 cut(s)	356
AsiGI	ACCGGT	1 cut(s)	34
AspLEI	GCGC	2 cut(s)	225, 524
AsuHPI	GGTGA	2 cut(s)	24, 215
AsuNHI	GCTAGC	1 cut(s)	368
BbvI	GCAGC	1 cut(s)	487
BcgI	CGANNNNNNTGC	2 cut(s)	259, 293
BciT130I	CCWGG	2 cut(s)	158, 337
BciVI	GTATCC	1 cut(s)	484
BclI	TGATCA	1 cut(s)	61
BfaI	CTAG	2 cut(s)	57, 369
BfuAI	ACCTGC	1 cut(s)	527
BfuI	GTATCC	1 cut(s)	484
BisI	GCNGC	1 cut(s)	501
BlsI	GCNGC	1 cut(s)	502
Bme1390I	CCNGG	2 cut(s)	158, 337
BmiI	GGNNCC	1 cut(s)	334
BmrFI	CCNGG	2 cut(s)	158, 337
BmsI	GCATC	1 cut(s)	467
BmtI	GCTAGC	1 cut(s)	372
BsaJI	CCNNGG	1 cut(s)	157
BsaWI	WCCGGW	1 cut(s)	34
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bse118I	RCCGGY	1 cut(s)	34
Bse3DI	GCAATG	2 cut(s)	225, 379
BseBI	CCWGG	2 cut(s)	158, 337
BseDI	CCNNGG	1 cut(s)	157
BseMI	GCAATG	2 cut(s)	225, 379
BseRI	GAGGAG	2 cut(s)	195, 246
BseXI	GCAGC	1 cut(s)	487
BshFI	GGCC	1 cut(s)	465
BshTI	ACCGGT	1 cut(s)	34
BsiSI	CCGG	1 cut(s)	35
BsnI	GGCC	1 cut(s)	465
Bsp143I	GATC	2 cut(s)	61, 439
BspANI	GGCC	1 cut(s)	465
BspLI	GGNNCC	1 cut(s)	334
BspMI	ACCTGC	1 cut(s)	527
BspOI	GCTAGC	1 cut(s)	372
BsrDI	GCAATG	2 cut(s)	225, 379
BsrFI	RCCGGY	1 cut(s)	34
BssAI	RCCGGY	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	157
BssMI	GATC	2 cut(s)	61, 439
Bst2UI	CCWGG	2 cut(s)	158, 337
Bst4CI	ACNGT	2 cut(s)	151, 277
BstAPI	GCANNNNNTGC	1 cut(s)	509
BstC8I	GCNNGC	3 cut(s)	282, 370, 448
BstDEI	CTNAG	1 cut(s)	400
BstHHI	GCGC	2 cut(s)	225, 524
BstKTI	GATC	2 cut(s)	64, 442
BstMBI	GATC	2 cut(s)	61, 439
BstMWI	GCNNNNNNNGC	1 cut(s)	509
BstNI	CCWGG	2 cut(s)	158, 337
BstSCI	CCNGG	2 cut(s)	156, 335
BstV1I	GCAGC	1 cut(s)	487
BsuI	GTATCC	1 cut(s)	484
BsuRI	GGCC	1 cut(s)	465
BveI	ACCTGC	1 cut(s)	527
Cac8I	GCNNGC	3 cut(s)	282, 370, 448
CfoI	GCGC	2 cut(s)	225, 524
Cfr10I	RCCGGY	1 cut(s)	34
CseI	GACGC	1 cut(s)	10
Csp6I	GTAC	2 cut(s)	131, 310
CspAI	ACCGGT	1 cut(s)	34
CviJI	RGCY	4 cut(s)	84, 284, 368, 465
CviKI_1	RGCY	4 cut(s)	84, 284, 368, 465
CviQI	GTAC	2 cut(s)	131, 310
DdeI	CTNAG	1 cut(s)	400
DpnI	GATC	2 cut(s)	63, 441
DpnII	GATC	2 cut(s)	61, 439
Eco57I	CTGAAG	1 cut(s)	33
EcoRII	CCWGG	2 cut(s)	156, 335
FaiI	YATR	6 cut(s)	87, 216, 261, 411, 483, 536
FbaI	TGATCA	1 cut(s)	61
Fnu4HI	GCNGC	1 cut(s)	501
Fsp4HI	GCNGC	1 cut(s)	501
FspBI	CTAG	2 cut(s)	57, 369
FspI	TGCGCA	2 cut(s)	224, 523
GlaI	GCGC	2 cut(s)	224, 523
GluI	GCNGC	1 cut(s)	501
HaeIII	GGCC	1 cut(s)	465
HapII	CCGG	1 cut(s)	35
HgaI	GACGC	1 cut(s)	10
HhaI	GCGC	2 cut(s)	225, 524
Hin6I	GCGC	2 cut(s)	223, 522
HinP1I	GCGC	2 cut(s)	223, 522
HincII	GTYRAC	1 cut(s)	147
HindII	GTYRAC	1 cut(s)	147
HinfI	GANTC	2 cut(s)	8, 319
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	2 cut(s)	24, 215
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188I	TCNGA	2 cut(s)	13, 78
Hpy188III	TCNNGA	1 cut(s)	25
Hpy8I	GTNNAC	1 cut(s)	147
HpyAV	CCTTC	3 cut(s)	8, 203, 345
HpyCH4III	ACNGT	2 cut(s)	151, 277
HpyCH4V	TGCA	5 cut(s)	193, 218, 450, 458, 503
HpyF10VI	GCNNNNNNNGC	1 cut(s)	509
HpyF3I	CTNAG	1 cut(s)	400
HspAI	GCGC	2 cut(s)	223, 522
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	2 cut(s)	61, 439
LmnI	GCTCC	2 cut(s)	18, 89
LpnPI	CCDG	8 cut(s)	48, 143, 170, 294, 322, 349, 447, 532
Lsp1109I	GCAGC	1 cut(s)	487
LweI	GCATC	1 cut(s)	467
MaeI	CTAG	2 cut(s)	57, 369
MaeIII	GTNAC	2 cut(s)	235, 361
MalI	GATC	2 cut(s)	63, 441
MboI	GATC	2 cut(s)	61, 439
MboII	GAAGA	1 cut(s)	53
MluCI	AATT	3 cut(s)	72, 356, 504
MnlI	CCTC	4 cut(s)	173, 199, 259, 267
MseI	TTAA	1 cut(s)	471
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	2 cut(s)	158, 337
MvaI	CCWGG	2 cut(s)	158, 337
MwoI	GCNNNNNNNGC	1 cut(s)	509
NdeII	GATC	2 cut(s)	61, 439
NheI	GCTAGC	1 cut(s)	368
NlaIV	GGNNCC	1 cut(s)	334
NmuCI	GTSAC	1 cut(s)	361
NsbI	TGCGCA	2 cut(s)	224, 523
PaqCI	CACCTGC	1 cut(s)	527
PfeI	GAWTC	2 cut(s)	8, 319
PinAI	ACCGGT	1 cut(s)	34
PkrI	GCNGC	1 cut(s)	502
PsiI	TTATAA	1 cut(s)	536
Psp6I	CCWGG	2 cut(s)	156, 335
PspGI	CCWGG	2 cut(s)	156, 335
PspN4I	GGNNCC	1 cut(s)	334
RsaI	GTAC	2 cut(s)	132, 311
RsaNI	GTAC	2 cut(s)	131, 310
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	1 cut(s)	501
Sau3AI	GATC	2 cut(s)	61, 439
ScrFI	CCNGG	2 cut(s)	158, 337
SetI	ASST	6 cut(s)	136, 214, 370, 481, 521, 542
SfaNI	GCATC	1 cut(s)	467
Sse9I	AATT	3 cut(s)	72, 356, 504
SspMI	CTAG	2 cut(s)	57, 369
StyD4I	CCNGG	2 cut(s)	156, 335
TaaI	ACNGT	2 cut(s)	151, 277
TasI	AATT	3 cut(s)	72, 356, 504
TfiI	GAWTC	2 cut(s)	8, 319
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	1 cut(s)	500
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	1 cut(s)	426
XapI	RAATTY	1 cut(s)	356
XspI	CTAG	2 cut(s)	57, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.