Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8427559.1

Orthogroup ID

OG0002434

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1366

Gene Structure 1365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8427559.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 710 bp

atgataactcatggcaatattgtagccactacggcagctgttacgacactgattccaagtctgggtggcactgatgcatacttagcatacttgcccttggctcatgtttttgaattggccgcggagtctgtgatgatggcttcaggtgttaaagttggttatggttcagcattgactttaacagacacttcaaataaaattaagaaaggaaccaagggagatgtttctatgttaaagccgactctcatgactacagttcctgctattatagatcgtattcgtgatgcagtttttaaaaaggttgaggagaaaggggggacagcgaagaacctttttgacattggatttaaacggcgactggctgctgttgaaggaagctggtttggtgcttggggtctggaaaaattgttttgggataattttgtctttaaagttatacgtctagggctgggagggcgcattcgctttatgatctgtggtggagctcctttatctgctgattcacaacgattcatcaatatctgcatgggtgctccaatcgggcaagcatatggcttgacagaaacatttgctggagctacgttttctgagtgggatgacacagcagtgggccgtgttggcccaccattgcctagttgctacattaagcttgtttcttggaaagaaggtggatacttggcatctgacaagccaatgcctcgtggggagat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0031967 GO:0031975 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

236

Amino Acids

25.31

Weight (kDa)

9.08

Isoelectric Point (pI)

21.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04350 AT2G04350
fragaria_vesca	FvH4_6g40470 FvH4_6g40470 FvH4_6g40470 FvH4_6g40470 FvH4_6g40470 FvH4_6g40470 FvH4_6g40470 FvH4_6g40470
malus_domestica	MD09G1129700.v1.1 MD17G1118500.v1.1
prunus_persica	Prupe.3G195600_v2.0.a1 Prupe.3G195600_v2.0.a1 Prupe.3G195600_v2.0.a1 Prupe.3G195600_v2.0.a1
pyrus_communis	pycom09g05270 pycom17g10890
rosa_chinensis	RchiOBHm_Chr2g0155701 RchiOBHm_Chr2g0155721
rosa_laevigata	RLG00000020855 RLG00000020857 RLG00000020858
rosa_multiflora	Rmu_co8272995.1_g000001 Rmu_co8427559.1_g000001 Rmu_sc0002712.1_g000001 Rmu_sc0011953.1_g000003 Rmu_sc0011953.1_g000015
rosa_roxburghii	Rroxscaffold_2G00093540
rosa_rugosa	Rorug02G0449500
rosa_samantha	Rh2AG515400 Rh2AG515500 Rh2BG526400 Rh2BG526500 Rh2CG500300 Rh2CG500500 Rh2DG535300 Rh2DG535500
rosa_wichuraiana	Rw2G042360 Rw2G042370 Rw2G042390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	122
AciI	CCGC	2 cut(s)	120, 122
AcoI	YGGCCR	1 cut(s)	117
AcuI	CTGAAG	1 cut(s)	126
AfiI	CCNNNNNNNGG	1 cut(s)	62
AgsI	TTSAA	3 cut(s)	113, 192, 371
AleI	CACNNNNGTG	1 cut(s)	605
AluBI	AGCT	5 cut(s)	38, 378, 485, 578, 649
AluI	AGCT	5 cut(s)	38, 378, 485, 578, 649
Alw21I	GWGCWC	2 cut(s)	487, 535
AlwNI	CAGNNNCTG	1 cut(s)	260
AoxI	GGCC	3 cut(s)	117, 610, 619
ApeKI	GCWGC	2 cut(s)	35, 362
AspLEI	GCGC	1 cut(s)	459
AspS9I	GGNCC	2 cut(s)	610, 620
BanII	GRGCYC	1 cut(s)	487
BauI	CACGAG	1 cut(s)	699
Bbv12I	GWGCWC	2 cut(s)	487, 535
BbvI	GCAGC	2 cut(s)	47, 349
BccI	CCATC	1 cut(s)	130
BceAI	ACGGC	3 cut(s)	48, 368, 597
BciVI	GTATCC	1 cut(s)	665
BfaI	CTAG	2 cut(s)	443, 633
BfmI	CTRYAG	1 cut(s)	252
BfuI	GTATCC	1 cut(s)	665
BglI	GCCNNNNNGGC	2 cut(s)	32, 618
BisI	GCNGC	3 cut(s)	36, 120, 363
BlsI	GCNGC	3 cut(s)	37, 121, 364
BmgT120I	GGNCC	2 cut(s)	610, 620
BmiI	GGNNCC	1 cut(s)	211
BmsI	GCATC	3 cut(s)	64, 274, 689
BpmI	CTGGAG	1 cut(s)	594
BsaJI	CCNNGG	3 cut(s)	96, 120, 213
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
Bse1I	ACTGG	1 cut(s)	363
Bse3DI	GCAATG	1 cut(s)	626
BseDI	CCNNGG	3 cut(s)	96, 120, 213
BseGI	GGATG	1 cut(s)	601
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseMI	GCAATG	1 cut(s)	626
BseMII	CTCAG	1 cut(s)	579
BseNI	ACTGG	1 cut(s)	363
BseRI	GAGGAG	1 cut(s)	320
BseXI	GCAGC	2 cut(s)	47, 349
BseYI	CCCAGC	1 cut(s)	448
Bsh1236I	CGCG	1 cut(s)	122
BshFI	GGCC	3 cut(s)	119, 612, 621
BsiHKAI	GWGCWC	2 cut(s)	487, 535
BslFI	GGGAC	1 cut(s)	331
BslI	CCNNNNNNNGG	1 cut(s)	62
BsmFI	GGGAC	1 cut(s)	331
BsmI	GAATGC	1 cut(s)	459
BsnI	GGCC	3 cut(s)	119, 612, 621
Bsp1286I	GDGCHC	2 cut(s)	487, 535
Bsp143I	GATC	2 cut(s)	271, 471
BspACI	CCGC	2 cut(s)	120, 122
BspANI	GGCC	3 cut(s)	119, 612, 621
BspCNI	CTCAG	1 cut(s)	580
BspFNI	CGCG	1 cut(s)	122
BspHI	TCATGA	1 cut(s)	246
BspLI	GGNNCC	1 cut(s)	211
BsrDI	GCAATG	1 cut(s)	626
BsrI	ACTGG	1 cut(s)	363
BssECI	CCNNGG	3 cut(s)	96, 120, 213
BssMI	GATC	2 cut(s)	271, 471
BssSI	CACGAG	1 cut(s)	699
BssT1I	CCWWGG	2 cut(s)	96, 213
Bst2BI	CACGAG	1 cut(s)	699
Bst4CI	ACNGT	1 cut(s)	256
BstC8I	GCNNGC	1 cut(s)	546
BstDEI	CTNAG	2 cut(s)	82, 588
BstDSI	CCRYGG	1 cut(s)	120
BstF5I	GGATG	1 cut(s)	601
BstFNI	CGCG	1 cut(s)	122
BstHHI	GCGC	1 cut(s)	459
BstKTI	GATC	2 cut(s)	274, 474
BstMBI	GATC	2 cut(s)	271, 471
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 83, 454, 618
BstSFI	CTRYAG	1 cut(s)	252
BstUI	CGCG	1 cut(s)	122
BstV1I	GCAGC	2 cut(s)	47, 349
BsuI	GTATCC	1 cut(s)	665
BsuRI	GGCC	3 cut(s)	119, 612, 621
BtgI	CCRYGG	1 cut(s)	120
BtsCI	GGATG	1 cut(s)	601
BtsI	GCAGTG	1 cut(s)	612
BtsIMutI	CAGTG	3 cut(s)	47, 69, 612
Cac8I	GCNNGC	1 cut(s)	546
CaiI	CAGNNNCTG	1 cut(s)	260
CciI	TCATGA	1 cut(s)	246
CfoI	GCGC	1 cut(s)	459
Cfr13I	GGNCC	2 cut(s)	610, 620
Cfr42I	CCGCGG	1 cut(s)	123
CviAII	CATG	4 cut(s)	11, 104, 247, 526
DdeI	CTNAG	2 cut(s)	82, 588
DpnI	GATC	2 cut(s)	273, 473
DpnII	GATC	2 cut(s)	271, 471
DraI	TTTAAA	3 cut(s)	295, 349, 430
EaeI	YGGCCR	1 cut(s)	117
Ecl136II	GAGCTC	1 cut(s)	485
Eco130I	CCWWGG	2 cut(s)	96, 213
Eco24I	GRGCYC	1 cut(s)	487
Eco53kI	GAGCTC	1 cut(s)	485
Eco57I	CTGAAG	1 cut(s)	126
EcoICRI	GAGCTC	1 cut(s)	485
EcoT14I	CCWWGG	2 cut(s)	96, 213
EcoT22I	ATGCAT	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	487
ErhI	CCWWGG	2 cut(s)	96, 213
FaeI	CATG	4 cut(s)	14, 107, 250, 529
FaqI	GGGAC	1 cut(s)	331
FatI	CATG	4 cut(s)	10, 103, 246, 525
FauNDI	CATATG	1 cut(s)	550
Fnu4HI	GCNGC	3 cut(s)	36, 120, 363
FokI	GGATG	1 cut(s)	608
FriOI	GRGCYC	1 cut(s)	487
Fsp4HI	GCNGC	3 cut(s)	36, 120, 363
FspBI	CTAG	2 cut(s)	443, 633
GlaI	GCGC	1 cut(s)	458
GluI	GCNGC	3 cut(s)	36, 120, 363
GsaI	CCCAGC	1 cut(s)	452
GsuI	CTGGAG	1 cut(s)	594
HaeIII	GGCC	3 cut(s)	119, 612, 621
HhaI	GCGC	1 cut(s)	459
Hin1II	CATG	4 cut(s)	14, 107, 250, 529
Hin6I	GCGC	1 cut(s)	457
HinP1I	GCGC	1 cut(s)	457
HindIII	AAGCTT	1 cut(s)	647
HinfI	GANTC	5 cut(s)	52, 125, 241, 500, 510
Hpy188I	TCNGA	2 cut(s)	589, 685
Hpy188III	TCNNGA	3 cut(s)	247, 281, 398
HpyAV	CCTTC	2 cut(s)	365, 659
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4IV	ACGT	2 cut(s)	439, 581
HpyCH4V	TGCA	3 cut(s)	77, 287, 525
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 83, 454, 618
HpyF3I	CTNAG	2 cut(s)	82, 588
HpySE526I	ACGT	2 cut(s)	439, 581
Hsp92II	CATG	4 cut(s)	14, 107, 250, 529
HspAI	GCGC	1 cut(s)	457
KspI	CCGCGG	1 cut(s)	123
Kzo9I	GATC	2 cut(s)	271, 471
LmnI	GCTCC	4 cut(s)	482, 490, 538, 575
LpnPI	CCDG	8 cut(s)	47, 129, 273, 344, 364, 383, 434, 558
Lsp1109I	GCAGC	2 cut(s)	47, 349
LweI	GCATC	3 cut(s)	64, 274, 689
MaeI	CTAG	2 cut(s)	443, 633
MaeII	ACGT	2 cut(s)	439, 581
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	2 cut(s)	273, 473
MboI	GATC	2 cut(s)	271, 471
MboII	GAAGA	1 cut(s)	337
MhlI	GDGCHC	2 cut(s)	487, 535
MluCI	AATT	4 cut(s)	113, 198, 404, 418
MlyI	GAGTC	2 cut(s)	134, 235
MnlI	CCTC	3 cut(s)	298, 446, 708
Mph1103I	ATGCAT	1 cut(s)	79
MseI	TTAA	8 cut(s)	150, 179, 201, 233, 294, 348, 429, 645
MslI	CAYNNNNRTG	1 cut(s)	605
MspA1I	CMGCKG	2 cut(s)	38, 122
Mva1269I	GAATGC	1 cut(s)	459
MvnI	CGCG	1 cut(s)	122
MwoI	GCNNNNNNNGC	4 cut(s)	32, 83, 454, 618
NdeI	CATATG	1 cut(s)	550
NdeII	GATC	2 cut(s)	271, 471
NlaIII	CATG	4 cut(s)	14, 107, 250, 529
NlaIV	GGNNCC	1 cut(s)	211
NsiI	ATGCAT	1 cut(s)	79
OliI	CACNNNNGTG	1 cut(s)	605
PagI	TCATGA	1 cut(s)	246
PctI	GAATGC	1 cut(s)	459
PfeI	GAWTC	3 cut(s)	52, 500, 510
PkrI	GCNGC	3 cut(s)	37, 121, 364
PleI	GAGTC	2 cut(s)	133, 235
PpsI	GAGTC	2 cut(s)	133, 235
Psp124BI	GAGCTC	1 cut(s)	487
PspFI	CCCAGC	1 cut(s)	448
PspN4I	GGNNCC	1 cut(s)	211
PspPI	GGNCC	2 cut(s)	610, 620
PstNI	CAGNNNCTG	1 cut(s)	260
PvuII	CAGCTG	1 cut(s)	38
RseI	CAYNNNNRTG	1 cut(s)	605
SacI	GAGCTC	1 cut(s)	487
SacII	CCGCGG	1 cut(s)	123
SaqAI	TTAA	8 cut(s)	150, 179, 201, 233, 294, 348, 429, 645
SatI	GCNGC	3 cut(s)	36, 120, 363
Sau3AI	GATC	2 cut(s)	271, 471
Sau96I	GGNCC	2 cut(s)	610, 620
SchI	GAGTC	2 cut(s)	134, 235
SduI	GDGCHC	2 cut(s)	487, 535
SfaNI	GCATC	3 cut(s)	64, 274, 689
SfcI	CTRYAG	1 cut(s)	252
SfiI	GGCCNNNNNGGCC	1 cut(s)	618
Sfr303I	CCGCGG	1 cut(s)	123
SgrBI	CCGCGG	1 cut(s)	123
SmiMI	CAYNNNNRTG	1 cut(s)	605
Sse9I	AATT	4 cut(s)	113, 198, 404, 418
SsiI	CCGC	2 cut(s)	120, 122
SspI	AATATT	1 cut(s)	19
SspMI	CTAG	2 cut(s)	443, 633
SstI	GAGCTC	1 cut(s)	487
StyI	CCWWGG	2 cut(s)	96, 213
TaaI	ACNGT	1 cut(s)	256
TaiI	ACGT	2 cut(s)	442, 584
TasI	AATT	4 cut(s)	113, 198, 404, 418
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	3 cut(s)	52, 500, 510
Tru1I	TTAA	8 cut(s)	150, 179, 201, 233, 294, 348, 429, 645
Tru9I	TTAA	8 cut(s)	150, 179, 201, 233, 294, 348, 429, 645
TscAI	CASTG	3 cut(s)	54, 76, 612
TseI	GCWGC	2 cut(s)	35, 362
TspDTI	ATGAA	1 cut(s)	502
TspRI	CASTG	3 cut(s)	54, 76, 612
XspI	CTAG	2 cut(s)	443, 633
Zsp2I	ATGCAT	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.