Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002434

Physical Location & Seq

Genomic Coordinates Forward (+)

67238799 .. 67242356

Gene Structure 3558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG500300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2055 bp

ATGGAGGATTCTGAAGGGAGTGTCTTGAACTCACCGGTTGAAGAAAACTTGGGTGCTAGTGATCACTTGTCAATTCTGAAAGGCTATGGAGCATTTGGGATATTGGGTGCTGTTATTATTGCCCTACTTGTACCTTTGTTGCTGTCAATTGTGTTCCTGGGAAAGAAAAGGAAGCAACGAGGAGTTCCCGTGCAAGTTGGTGGTGAGGAAGGTTATGCAATGCGCAACATTCGTGTTACTGACTTGATTGAAACTCCTCATAAAGAGGCAACAACTGTGCCAGCCTTGTTTGAGCAATCTTGTGAAAAGTACGCACAGAATCAGTTTCTTGGAACCAGGAAGTTGATTGGAAGGGAATTTGTCACAGCTAGCAATGGCAAGAAGTTTGAGAAACTTCACTTAGGAGATTATGAATGGCAAACTTACAGACAAGTCTTTGATCGTGCTTGCAACTTTGCATCTGGCCTTATTAAGTTAGGTCATAATGTGGATACCCGTGCTGCAATTTTTGCTGACACCTGCGCAGAGTGGTTTATAACCTTTCAGGGGTGCTTCCGGCAGAATATTACTGTTGTTACGATCTATTCTTCCCTAGGTGAGGATGCCCTAATCCACTCGCTTAATGAGACTCAAGTATCAACATTGATCTGTGATTCAAAGCAGTTGAAAAAGCTGGCTTCCATAAGCTCAAGGCTAAATAGCATAAAAAATGTAATTTATTTTGAAGACGAGGGAAGTTCAGATGCTAAAGAATTTGAAAGTACTACCAATTGGACGGTCAGATCCATTTCTGAAGTTGAGAAACTTGGACAAGAAAATTCTGTTCATCCACGTTTACCTTCTAAGAATGACATCGCTGTTATCATGTATACAAGCGGCAGTACAGGTCTACCAAAGGGGGTCATGATAACTCATGGTAATATTGTAGCCACTACGGCAGCTGTTACGACACTGATTCCAAGTCTGGGTAGCACTGATGCATACTTAGCATACTTGCCCTTAGCTCATGTTTTTGAATTGGCCGCGGAGTCTGTGATGATGGCTTCAGGTGTTAAAGTTGGTTATGGTTCAGCATTGACTTTAACAGACACTTCAAATAAAATTAAGAAAGGAACCAAGGGAGATGTTTCTATGTTAAAGCCGACTCTCATGACTACAGTTCCTGCTATTATAGATCGTATTCGTGATGCAGTTTTTAAAAAGGTTGAGGAGAAAGGGGGGATAGCGAAGAACCTTTTTGACATTGGATTTAAACGGCGACTGGCTGCTGTTGAAGGAAGCTGGTTTGGTGCTTGGGGTCTGGAAAAATTGTTTTGGGATAATTTTGTCTTTAAAGTTATACGTCTAGCGCTGGGAGGGCGCGTTCGCTTTATGATATGTGGTGGAGCTCCTTTATCTGCTGATTCACAACGATTCATCAATATCTGCATGGGTGCTCCAATCGGGCAAGCATATGGCTTGACAGAAACATTTGCTGGAGCTACGTTTTCTGAGTGGGATGACACAGCAGTGGGCCGTGTTGGCCCACCATTGCCTTGTTGCTACATTAAGCTTGTTTCTTGGAAAGAAGGTGGATACTTGGCATCTGACAAGCCAATGCCTCGTGGGGAGATTGTAATTGGGGGACCCTGTGTAACTGCTGGGTACTTTAAGAATCAAGAAAAGACTGATGAGGTCTACAAGGTTGAGGCGGCATTGATAAACAGTAATTATGTGGACAATATCATGGTATTTGCAGACCCCTTCCACAACTACTGCGTAGCTGTAGTTGTCCCTGTGCGTCAAGACCTAGAGCAGTGGGCTCAGGGAGCTGGAATCAAGTACAATGATTTTTCTGAGCTGTGTGGAAAAGCTGAAGCAGTTAGTGAGATCCAGCAATCCCTCTCCAAGGTAGCAAAAGAAGCAAAATTGGACAAGTTTGAACTTCCTGGAAAGATTTATTTGGCGCCTGATCCATGGACACCTGAATCTGGATTGGTTACTGCTGCTCTCAAGATCAAGAGGGAACAGATCAAGTCCAAGTTCAAAAGTGAGATTGAGAAGTTGTATGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0031967 GO:0031975 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

684

Amino Acids

74.93

Weight (kDa)

7.09

Isoelectric Point (pI)

26.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	130 - 550	2.4e-87	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04350 AT2G04350
fragaria_vesca	FvH4_6g40470 FvH4_6g40470 FvH4_6g40470 FvH4_6g40470 FvH4_6g40470 FvH4_6g40470 FvH4_6g40470 FvH4_6g40470
malus_domestica	MD09G1129700.v1.1 MD17G1118500.v1.1
prunus_persica	Prupe.3G195600_v2.0.a1 Prupe.3G195600_v2.0.a1 Prupe.3G195600_v2.0.a1 Prupe.3G195600_v2.0.a1
pyrus_communis	pycom09g05270 pycom17g10890
rosa_chinensis	RchiOBHm_Chr2g0155701 RchiOBHm_Chr2g0155721
rosa_laevigata	RLG00000020855 RLG00000020857 RLG00000020858
rosa_multiflora	Rmu_co8272995.1_g000001 Rmu_co8427559.1_g000001 Rmu_sc0002712.1_g000001 Rmu_sc0011953.1_g000003 Rmu_sc0011953.1_g000015
rosa_roxburghii	Rroxscaffold_2G00093540
rosa_rugosa	Rorug02G0449500
rosa_samantha	Rh2AG515400 Rh2AG515500 Rh2BG526400 Rh2BG526500 Rh2CG500300 Rh2CG500500 Rh2DG535300 Rh2DG535500
rosa_wichuraiana	Rw2G042360 Rw2G042370 Rw2G042390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	536
AarI	CACCTGC	1 cut(s)	527
Acc16I	TGCGCA	2 cut(s)	224, 523
Acc36I	ACCTGC	1 cut(s)	527
AccB1I	GGYRCC	1 cut(s)	1945
AccI	GTMKAC	3 cut(s)	869, 889, 1677
AccII	CGCG	2 cut(s)	1025, 1362
AciI	CCGC	4 cut(s)	876, 1023, 1025, 1691
AclWI	GGATC	3 cut(s)	777, 1864, 1946
AcoI	YGGCCR	1 cut(s)	1020
AcsI	RAATTY	3 cut(s)	356, 752, 817
AcuI	CTGAAG	4 cut(s)	33, 813, 1029, 1875
AcyI	GRCGYC	1 cut(s)	1946
AfaI	GTAC	6 cut(s)	132, 311, 763, 883, 1646, 1823
AfeI	AGCGCT	1 cut(s)	1350
AfiI	CCNNNNNNNGG	5 cut(s)	546, 598, 965, 1888, 1970
AgeI	ACCGGT	1 cut(s)	34
AjnI	CCWGG	3 cut(s)	156, 335, 1927
AleI	CACNNNNGTG	1 cut(s)	1508
AloI	GAACNNNNNNTCC	2 cut(s)	1347, 1379
Alw21I	GWGCWC	2 cut(s)	1390, 1438
Alw26I	GTCTC	1 cut(s)	620
AlwI	GGATC	3 cut(s)	777, 1864, 1946
AlwNI	CAGNNNCTG	1 cut(s)	1163
Aor51HI	AGCGCT	1 cut(s)	1350
AoxI	GGCC	4 cut(s)	463, 1020, 1513, 1522
ApeKI	GCWGC	4 cut(s)	500, 938, 1265, 1985
ApoI	RAATTY	3 cut(s)	356, 752, 817
AsiGI	ACCGGT	1 cut(s)	34
AspA2I	CCTAGG	1 cut(s)	592
AspLEI	GCGC	5 cut(s)	225, 524, 1351, 1362, 1948
AspS9I	GGNCC	3 cut(s)	1513, 1523, 1625
AsuHPI	GGTGA	3 cut(s)	24, 215, 608
AsuNHI	GCTAGC	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	1625
AvrII	CCTAGG	1 cut(s)	592
BaeI	ACNNNNGTAYC	2 cut(s)	618, 651
BanI	GGYRCC	1 cut(s)	1945
BanII	GRGCYC	2 cut(s)	1390, 1804
BauI	CACGAG	1 cut(s)	1602
BbsI	GAAGAC	1 cut(s)	732
Bbv12I	GWGCWC	2 cut(s)	1390, 1438
BbvI	GCAGC	4 cut(s)	487, 950, 1252, 1972
BccI	CCATC	1 cut(s)	1033
BceAI	ACGGC	3 cut(s)	951, 1271, 1500
BciT130I	CCWGG	3 cut(s)	158, 337, 1929
BciVI	GTATCC	2 cut(s)	484, 1568
BclI	TGATCA	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	620
BfaI	CTAG	5 cut(s)	57, 369, 593, 1346, 1790
BfmI	CTRYAG	2 cut(s)	1155, 1764
BfoI	RGCGCY	2 cut(s)	1352, 1949
BfuAI	ACCTGC	1 cut(s)	527
BfuI	GTATCC	2 cut(s)	484, 1568
BglI	GCCNNNNNGGC	2 cut(s)	935, 1521
BisI	GCNGC	7 cut(s)	501, 877, 939, 1023, 1266, 1692, 1986
BlnI	CCTAGG	1 cut(s)	592
BlsI	GCNGC	7 cut(s)	502, 878, 940, 1024, 1267, 1693, 1987
BmcAI	AGTACT	1 cut(s)	763
Bme1390I	CCNGG	3 cut(s)	158, 337, 1929
Bme18I	GGWCC	1 cut(s)	1625
BmgT120I	GGNCC	3 cut(s)	1513, 1523, 1625
BmiI	GGNNCC	5 cut(s)	334, 1114, 1626, 1627, 1947
BmrFI	CCNGG	3 cut(s)	158, 337, 1929
BmsI	GCATC	6 cut(s)	467, 592, 733, 967, 1177, 1592
BmtI	GCTAGC	1 cut(s)	372
BpiI	GAAGAC	1 cut(s)	732
BpmI	CTGGAG	1 cut(s)	1497
Bpu10I	CCTNAGC	2 cut(s)	1000, 1803
BpuEI	CTTGAG	3 cut(s)	615, 673, 1976
BsaHI	GRCGYC	1 cut(s)	1946
BsaJI	CCNNGG	6 cut(s)	157, 592, 1023, 1116, 1887, 1955
BsaWI	WCCGGW	1 cut(s)	34
BsaXI	ACNNNNNCTCC	4 cut(s)	174, 204, 1347, 1377
Bsc4I	CCNNNNNNNGG	5 cut(s)	546, 598, 965, 1888, 1970
Bse118I	RCCGGY	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	1266
Bse3DI	GCAATG	3 cut(s)	225, 379, 1529
BseBI	CCWGG	3 cut(s)	158, 337, 1929
BseDI	CCNNGG	6 cut(s)	157, 592, 1023, 1116, 1887, 1955
BseGI	GGATG	3 cut(s)	607, 826, 1504
BseLI	CCNNNNNNNGG	5 cut(s)	546, 598, 965, 1888, 1970
BseMI	GCAATG	3 cut(s)	225, 379, 1529
BseMII	CTCAG	3 cut(s)	1482, 1817, 1827
BseNI	ACTGG	1 cut(s)	1266
BseRI	GAGGAG	3 cut(s)	195, 246, 1223
BseXI	GCAGC	4 cut(s)	487, 950, 1252, 1972
BseYI	CCCAGC	2 cut(s)	1351, 1640
Bsh1236I	CGCG	2 cut(s)	1025, 1362
BshFI	GGCC	4 cut(s)	465, 1022, 1515, 1524
BshNI	GGYRCC	1 cut(s)	1945
BshTI	ACCGGT	1 cut(s)	34
BsiHKAI	GWGCWC	2 cut(s)	1390, 1438
BsiSI	CCGG	2 cut(s)	35, 556
BslFI	GGGAC	2 cut(s)	1638, 1757
BslI	CCNNNNNNNGG	5 cut(s)	546, 598, 965, 1888, 1970
BsmAI	GTCTC	1 cut(s)	620
BsmFI	GGGAC	2 cut(s)	1638, 1757
BsnI	GGCC	4 cut(s)	465, 1022, 1515, 1524
Bsp1286I	GDGCHC	3 cut(s)	1390, 1438, 1804
Bsp19I	CCATGG	1 cut(s)	1955
BspACI	CCGC	4 cut(s)	876, 1023, 1025, 1691
BspANI	GGCC	4 cut(s)	465, 1022, 1515, 1524
BspCNI	CTCAG	3 cut(s)	1483, 1816, 1828
BspFNI	CGCG	2 cut(s)	1025, 1362
BspHI	TCATGA	2 cut(s)	903, 1149
BspLI	GGNNCC	5 cut(s)	334, 1114, 1626, 1627, 1947
BspMI	ACCTGC	1 cut(s)	527
BspOI	GCTAGC	1 cut(s)	372
BspPI	GGATC	3 cut(s)	777, 1864, 1946
BspT107I	GGYRCC	1 cut(s)	1945
BsrDI	GCAATG	3 cut(s)	225, 379, 1529
BsrFI	RCCGGY	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	1266
BssAI	RCCGGY	1 cut(s)	34
BssECI	CCNNGG	6 cut(s)	157, 592, 1023, 1116, 1887, 1955
BssNAI	GTATAC	1 cut(s)	870
BssNI	GRCGYC	1 cut(s)	1946
BssSI	CACGAG	1 cut(s)	1602
BssT1I	CCWWGG	4 cut(s)	592, 1116, 1887, 1955
Bst1107I	GTATAC	1 cut(s)	870
Bst2BI	CACGAG	1 cut(s)	1602
Bst2UI	CCWGG	3 cut(s)	158, 337, 1929
Bst4CI	ACNGT	5 cut(s)	277, 571, 778, 1159, 1706
BstACI	GRCGYC	1 cut(s)	1946
BstAPI	GCANNNNNTGC	1 cut(s)	509
BstC8I	GCNNGC	5 cut(s)	282, 370, 448, 675, 1449
BstDEI	CTNAG	7 cut(s)	400, 843, 985, 1000, 1491, 1803, 1836
BstDSI	CCRYGG	2 cut(s)	1023, 1955
BstENI	CCTNNNNNAGG	2 cut(s)	596, 1886
BstF5I	GGATG	3 cut(s)	607, 826, 1504
BstFNI	CGCG	2 cut(s)	1025, 1362
BstH2I	RGCGCY	2 cut(s)	1352, 1949
BstHHI	GCGC	5 cut(s)	225, 524, 1351, 1362, 1948
BstMAI	GTCTC	1 cut(s)	620
BstMWI	GCNNNNNNNGC	7 cut(s)	509, 935, 986, 1357, 1521, 1808, 1901
BstNI	CCWGG	3 cut(s)	158, 337, 1929
BstSCI	CCNGG	3 cut(s)	156, 335, 1927
BstSFI	CTRYAG	2 cut(s)	1155, 1764
BstUI	CGCG	2 cut(s)	1025, 1362
BstV1I	GCAGC	4 cut(s)	487, 950, 1252, 1972
BstV2I	GAAGAC	1 cut(s)	732
BstX2I	RGATCY	2 cut(s)	782, 1869
BstYI	RGATCY	2 cut(s)	782, 1869
BstZ17I	GTATAC	1 cut(s)	870
BsuI	GTATCC	2 cut(s)	484, 1568
BsuRI	GGCC	4 cut(s)	465, 1022, 1515, 1524
BtgI	CCRYGG	2 cut(s)	1023, 1955
BtgZI	GCGATG	1 cut(s)	838
BtsCI	GGATG	3 cut(s)	607, 826, 1504
BtsI	GCAGTG	2 cut(s)	1515, 1802
BtsIMutI	CAGTG	4 cut(s)	950, 972, 1515, 1802
BveI	ACCTGC	1 cut(s)	527
Cac8I	GCNNGC	5 cut(s)	282, 370, 448, 675, 1449
CaiI	CAGNNNCTG	1 cut(s)	1163
CciI	TCATGA	2 cut(s)	903, 1149
CfoI	GCGC	5 cut(s)	225, 524, 1351, 1362, 1948
Cfr10I	RCCGGY	1 cut(s)	34
Cfr13I	GGNCC	3 cut(s)	1513, 1523, 1625
Cfr42I	CCGCGG	1 cut(s)	1026
CseI	GACGC	1 cut(s)	1769
Csp6I	GTAC	6 cut(s)	131, 310, 762, 882, 1645, 1822
CspAI	ACCGGT	1 cut(s)	34
CviAII	CATG	8 cut(s)	865, 904, 914, 1007, 1150, 1429, 1726, 1956
CviQI	GTAC	6 cut(s)	131, 310, 762, 882, 1645, 1822
DdeI	CTNAG	7 cut(s)	400, 843, 985, 1000, 1491, 1803, 1836
DinI	GGCGCC	1 cut(s)	1947
DraI	TTTAAA	3 cut(s)	1198, 1252, 1333
EaeI	YGGCCR	1 cut(s)	1020
Ecl136II	GAGCTC	1 cut(s)	1388
Eco130I	CCWWGG	4 cut(s)	592, 1116, 1887, 1955
Eco24I	GRGCYC	2 cut(s)	1390, 1804
Eco47I	GGWCC	1 cut(s)	1625
Eco47III	AGCGCT	1 cut(s)	1350
Eco53kI	GAGCTC	1 cut(s)	1388
Eco57I	CTGAAG	4 cut(s)	33, 813, 1029, 1875
EcoICRI	GAGCTC	1 cut(s)	1388
EcoNI	CCTNNNNNAGG	2 cut(s)	596, 1886
EcoO109I	RGGNCCY	1 cut(s)	1625
EcoRII	CCWGG	3 cut(s)	156, 335, 1927
EcoT14I	CCWWGG	4 cut(s)	592, 1116, 1887, 1955
EcoT22I	ATGCAT	1 cut(s)	982
EcoT38I	GRGCYC	2 cut(s)	1390, 1804
EgeI	GGCGCC	1 cut(s)	1947
EheI	GGCGCC	1 cut(s)	1947
ErhI	CCWWGG	4 cut(s)	592, 1116, 1887, 1955
FaeI	CATG	8 cut(s)	868, 907, 917, 1010, 1153, 1432, 1729, 1959
FaqI	GGGAC	2 cut(s)	1638, 1757
FatI	CATG	8 cut(s)	864, 903, 913, 1006, 1149, 1428, 1725, 1955
FauNDI	CATATG	1 cut(s)	1453
FbaI	TGATCA	1 cut(s)	61
FblI	GTMKAC	3 cut(s)	869, 889, 1677
Fnu4HI	GCNGC	7 cut(s)	501, 877, 939, 1023, 1266, 1692, 1986
FokI	GGATG	3 cut(s)	614, 813, 1511
FriOI	GRGCYC	2 cut(s)	1390, 1804
Fsp4HI	GCNGC	7 cut(s)	501, 877, 939, 1023, 1266, 1692, 1986
FspBI	CTAG	5 cut(s)	57, 369, 593, 1346, 1790
FspI	TGCGCA	2 cut(s)	224, 523
GlaI	GCGC	5 cut(s)	224, 523, 1350, 1361, 1947
GluI	GCNGC	7 cut(s)	501, 877, 939, 1023, 1266, 1692, 1986
GsaI	CCCAGC	2 cut(s)	1355, 1644
GsuI	CTGGAG	1 cut(s)	1497
HaeII	RGCGCY	2 cut(s)	1352, 1949
HaeIII	GGCC	4 cut(s)	465, 1022, 1515, 1524
HapII	CCGG	2 cut(s)	35, 556
HgaI	GACGC	1 cut(s)	1769
HhaI	GCGC	5 cut(s)	225, 524, 1351, 1362, 1948
Hin1I	GRCGYC	1 cut(s)	1946
Hin1II	CATG	8 cut(s)	868, 907, 917, 1010, 1153, 1432, 1729, 1959
Hin6I	GCGC	5 cut(s)	223, 522, 1349, 1360, 1946
HinP1I	GCGC	5 cut(s)	223, 522, 1349, 1360, 1946
HindIII	AAGCTT	1 cut(s)	1550
HpaII	CCGG	2 cut(s)	35, 556
HphI	GGTGA	3 cut(s)	24, 215, 608
Hpy166II	GTNNAC	5 cut(s)	836, 870, 890, 1678, 1717
Hpy188I	TCNGA	8 cut(s)	13, 78, 742, 782, 793, 1492, 1588, 1837
Hpy8I	GTNNAC	5 cut(s)	836, 870, 890, 1678, 1717
HpyAV	CCTTC	7 cut(s)	8, 203, 345, 849, 1268, 1562, 1753
HpyCH4III	ACNGT	5 cut(s)	277, 571, 778, 1159, 1706
HpyCH4IV	ACGT	3 cut(s)	832, 1342, 1484
HpyCH4V	TGCA	9 cut(s)	193, 218, 450, 458, 503, 980, 1190, 1428, 1736
HpyF10VI	GCNNNNNNNGC	7 cut(s)	509, 935, 986, 1357, 1521, 1808, 1901
HpyF3I	CTNAG	7 cut(s)	400, 843, 985, 1000, 1491, 1803, 1836
HpySE526I	ACGT	3 cut(s)	832, 1342, 1484
Hsp92I	GRCGYC	1 cut(s)	1946
Hsp92II	CATG	8 cut(s)	868, 907, 917, 1010, 1153, 1432, 1729, 1959
HspAI	GCGC	5 cut(s)	223, 522, 1349, 1360, 1946
KasI	GGCGCC	1 cut(s)	1945
KflI	GGGWCCC	1 cut(s)	1625
Ksp22I	TGATCA	1 cut(s)	61
KspI	CCGCGG	1 cut(s)	1026
LmnI	GCTCC	6 cut(s)	89, 1385, 1393, 1441, 1478, 1808
Lsp1109I	GCAGC	4 cut(s)	487, 950, 1252, 1972
LweI	GCATC	6 cut(s)	467, 592, 733, 967, 1177, 1592
MaeI	CTAG	5 cut(s)	57, 369, 593, 1346, 1790
MaeII	ACGT	3 cut(s)	832, 1342, 1484
MaeIII	GTNAC	6 cut(s)	235, 361, 574, 943, 1633, 1978
MboII	GAAGA	4 cut(s)	53, 579, 737, 1240
MfeI	CAATTG	2 cut(s)	147, 769
MflI	RGATCY	2 cut(s)	782, 1869
MhlI	GDGCHC	3 cut(s)	1390, 1438, 1804
Mly113I	GGCGCC	1 cut(s)	1946
MlyI	GAGTC	3 cut(s)	622, 1037, 1138
Mph1103I	ATGCAT	1 cut(s)	982
MslI	CAYNNNNRTG	1 cut(s)	1508
MspA1I	CMGCKG	2 cut(s)	941, 1025
MspI	CCGG	2 cut(s)	35, 556
MspR9I	CCNGG	3 cut(s)	158, 337, 1929
MunI	CAATTG	2 cut(s)	147, 769
MvaI	CCWGG	3 cut(s)	158, 337, 1929
MvnI	CGCG	2 cut(s)	1025, 1362
MwoI	GCNNNNNNNGC	7 cut(s)	509, 935, 986, 1357, 1521, 1808, 1901
NarI	GGCGCC	1 cut(s)	1946
NcoI	CCATGG	1 cut(s)	1955
NdeI	CATATG	1 cut(s)	1453
NheI	GCTAGC	1 cut(s)	368
NlaIII	CATG	8 cut(s)	868, 907, 917, 1010, 1153, 1432, 1729, 1959
NlaIV	GGNNCC	5 cut(s)	334, 1114, 1626, 1627, 1947
NmuCI	GTSAC	1 cut(s)	361
NsbI	TGCGCA	2 cut(s)	224, 523
NsiI	ATGCAT	1 cut(s)	982
OliI	CACNNNNGTG	1 cut(s)	1508
PagI	TCATGA	2 cut(s)	903, 1149
PaqCI	CACCTGC	1 cut(s)	527
PfeI	GAWTC	9 cut(s)	8, 319, 653, 955, 1403, 1413, 1654, 1815, 1967
PfoI	TCCNGGA	1 cut(s)	1927
PinAI	ACCGGT	1 cut(s)	34
PkrI	GCNGC	7 cut(s)	502, 878, 940, 1024, 1267, 1693, 1987
PleI	GAGTC	3 cut(s)	622, 1036, 1138
PluTI	GGCGCC	1 cut(s)	1949
PpsI	GAGTC	3 cut(s)	622, 1036, 1138
PpuMI	RGGWCCY	1 cut(s)	1625
PsiI	TTATAA	1 cut(s)	536
Psp124BI	GAGCTC	1 cut(s)	1390
Psp5II	RGGWCCY	1 cut(s)	1625
Psp6I	CCWGG	3 cut(s)	156, 335, 1927
PspFI	CCCAGC	2 cut(s)	1351, 1640
PspGI	CCWGG	3 cut(s)	156, 335, 1927
PspN4I	GGNNCC	5 cut(s)	334, 1114, 1626, 1627, 1947
PspPI	GGNCC	3 cut(s)	1513, 1523, 1625
PspPPI	RGGWCCY	1 cut(s)	1625
PstNI	CAGNNNCTG	1 cut(s)	1163
PsuI	RGATCY	2 cut(s)	782, 1869
PvuII	CAGCTG	1 cut(s)	941
RsaI	GTAC	6 cut(s)	132, 311, 763, 883, 1646, 1823
RsaNI	GTAC	6 cut(s)	131, 310, 762, 882, 1645, 1822
RseI	CAYNNNNRTG	1 cut(s)	1508
SacI	GAGCTC	1 cut(s)	1390
SacII	CCGCGG	1 cut(s)	1026
SatI	GCNGC	7 cut(s)	501, 877, 939, 1023, 1266, 1692, 1986
Sau96I	GGNCC	3 cut(s)	1513, 1523, 1625
ScaI	AGTACT	1 cut(s)	763
SchI	GAGTC	3 cut(s)	622, 1037, 1138
ScrFI	CCNGG	3 cut(s)	158, 337, 1929
SduI	GDGCHC	3 cut(s)	1390, 1438, 1804
SfaNI	GCATC	6 cut(s)	467, 592, 733, 967, 1177, 1592
SfcI	CTRYAG	2 cut(s)	1155, 1764
SfiI	GGCCNNNNNGGCC	1 cut(s)	1521
SfoI	GGCGCC	1 cut(s)	1947
Sfr303I	CCGCGG	1 cut(s)	1026
SgrBI	CCGCGG	1 cut(s)	1026
SinI	GGWCC	1 cut(s)	1625
SmiMI	CAYNNNNRTG	1 cut(s)	1508
SmlI	CTYRAG	3 cut(s)	630, 688, 1991
SmoI	CTYRAG	3 cut(s)	630, 688, 1991
SsiI	CCGC	4 cut(s)	876, 1023, 1025, 1691
SspDI	GGCGCC	1 cut(s)	1945
SspI	AATATT	2 cut(s)	565, 922
SspMI	CTAG	5 cut(s)	57, 369, 593, 1346, 1790
SstI	GAGCTC	1 cut(s)	1390
StyD4I	CCNGG	3 cut(s)	156, 335, 1927
StyI	CCWWGG	4 cut(s)	592, 1116, 1887, 1955
TaaI	ACNGT	5 cut(s)	277, 571, 778, 1159, 1706
TaiI	ACGT	3 cut(s)	835, 1345, 1487
TatI	WGTACW	3 cut(s)	761, 881, 1821
TauI	GCSGC	3 cut(s)	879, 1025, 1694
TfiI	GAWTC	9 cut(s)	8, 319, 653, 955, 1403, 1413, 1654, 1815, 1967
TscAI	CASTG	4 cut(s)	957, 979, 1515, 1802
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	4 cut(s)	500, 938, 1265, 1985
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	3 cut(s)	426, 815, 1405
TspRI	CASTG	4 cut(s)	957, 979, 1515, 1802
VpaK11BI	GGWCC	1 cut(s)	1625
XagI	CCTNNNNNAGG	2 cut(s)	596, 1886
XapI	RAATTY	3 cut(s)	356, 752, 817
XmaJI	CCTAGG	1 cut(s)	592
XmiI	GTMKAC	3 cut(s)	869, 889, 1677
XspI	CTAG	5 cut(s)	57, 369, 593, 1346, 1790
ZrmI	AGTACT	1 cut(s)	763
Zsp2I	ATGCAT	1 cut(s)	982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.