Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005640

Physical Location & Seq

Genomic Coordinates Reverse (-)

8500802 .. 8501032

Gene Structure 231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGAGGTCTGATGTGTCCAAAAAGAATGACAGCATAAAAGATGGTGCGGAGAATTTGGAAGATCCAGAAGATTTGTTGCCTGAAGAAAGGAATAACCTAATTTCGAAGGAACCTGTTCCTACAGTTATACTGATTAATTCGTCTGTATGTAGCATGCAAAGGACAGCTCTACTGGAATATGGGAAATTGGTTGAGTTGCTACTGGAACCAGTTAAAAGTAGCGCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010239 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016787 GO:0016788 GO:0022613 GO:0031425 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901259 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_20 RNase_E_G

Protein Analysis

77

Amino Acids

8.41

Weight (kDa)

4.59

Isoelectric Point (pI)

48.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04270 AT2G04270 AT2G04270 AT2G04270 AT2G04270 AT2G04270 AT2G04270 AT2G04270 AT2G04270
fragaria_vesca	FvH4_6g40410
malus_domestica	MD09G1130200.v1.1 MD17G1105400.v1.1
prunus_persica	Prupe.3G194900_v2.0.a1 Prupe.3G194900_v2.0.a1
pyrus_communis	pycom09g05330 pycom17g10950 pycom17g10970
rosa_chinensis	RchiOBHm_Chr2g0155641
rosa_laevigata	RLG00000020850
rosa_multiflora	Rmu_ssc0000430.1_g000006
rosa_roxburghii	Rroxscaffold_2G00093600
rosa_rugosa	Rorug02G0448700 Rorug02G0448700
rosa_samantha	Rh2AG514800 Rh2BG525700 Rh2CG499700 Rh2DG534600
rosa_wichuraiana	Rw2G042300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	47
AclWI	GGATC	1 cut(s)	56
AcsI	RAATTY	1 cut(s)	52
AcuI	CTGAAG	1 cut(s)	102
AluBI	AGCT	1 cut(s)	167
AluI	AGCT	1 cut(s)	167
AlwI	GGATC	1 cut(s)	56
ApoI	RAATTY	1 cut(s)	52
AseI	ATTAAT	1 cut(s)	135
Asp700I	GAANNNNTTC	1 cut(s)	114
AspLEI	GCGC	1 cut(s)	224
AsuII	TTCGAA	1 cut(s)	104
BccI	CCATC	1 cut(s)	35
BfmI	CTRYAG	1 cut(s)	120
BmiI	GGNNCC	2 cut(s)	111, 207
Bpu14I	TTCGAA	1 cut(s)	104
Bse1I	ACTGG	3 cut(s)	177, 207, 209
BseNI	ACTGG	3 cut(s)	177, 207, 209
Bsp119I	TTCGAA	1 cut(s)	104
Bsp143I	GATC	1 cut(s)	61
BspACI	CCGC	1 cut(s)	47
BspLI	GGNNCC	2 cut(s)	111, 207
BspPI	GGATC	1 cut(s)	56
BspT104I	TTCGAA	1 cut(s)	104
BsrI	ACTGG	3 cut(s)	177, 207, 209
BssMI	GATC	1 cut(s)	61
Bst4CI	ACNGT	1 cut(s)	124
BstBI	TTCGAA	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	155
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	61
BstNSI	RCATGY	1 cut(s)	157
BstSFI	CTRYAG	1 cut(s)	120
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	1 cut(s)	155
CfoI	GCGC	1 cut(s)	224
CviAII	CATG	1 cut(s)	154
CviJI	RGCY	1 cut(s)	167
CviKI_1	RGCY	1 cut(s)	167
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	102
FaeI	CATG	1 cut(s)	157
FaiI	YATR	5 cut(s)	35, 128, 148, 155, 180
FatI	CATG	1 cut(s)	153
GlaI	GCGC	1 cut(s)	223
HhaI	GCGC	1 cut(s)	224
Hin1II	CATG	1 cut(s)	157
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4V	TGCA	1 cut(s)	157
Hsp92II	CATG	1 cut(s)	157
HspAI	GCGC	1 cut(s)	222
Kzo9I	GATC	1 cut(s)	61
LpnPI	CCDG	6 cut(s)	78, 93, 126, 158, 188, 222
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	3 cut(s)	71, 80, 95
MflI	RGATCY	1 cut(s)	61
MluCI	AATT	4 cut(s)	52, 99, 136, 185
MroXI	GAANNNNTTC	1 cut(s)	114
MseI	TTAA	2 cut(s)	135, 213
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	1 cut(s)	157
NlaIV	GGNNCC	2 cut(s)	111, 207
NspI	RCATGY	1 cut(s)	157
NspV	TTCGAA	1 cut(s)	104
PaeI	GCATGC	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	114
PshBI	ATTAAT	1 cut(s)	135
PspN4I	GGNNCC	2 cut(s)	111, 207
PsuI	RGATCY	1 cut(s)	61
SaqAI	TTAA	2 cut(s)	135, 213
Sau3AI	GATC	1 cut(s)	61
SetI	ASST	4 cut(s)	8, 99, 115, 169
SfcI	CTRYAG	1 cut(s)	120
SfuI	TTCGAA	1 cut(s)	104
SgeI	CNNG	7 cut(s)	77, 92, 125, 166, 185, 215, 221
SphI	GCATGC	1 cut(s)	157
Sse9I	AATT	4 cut(s)	52, 99, 136, 185
SsiI	CCGC	1 cut(s)	47
TaaI	ACNGT	1 cut(s)	124
TaqI	TCGA	1 cut(s)	104
TasI	AATT	4 cut(s)	52, 99, 136, 185
Tru1I	TTAA	2 cut(s)	135, 213
Tru9I	TTAA	2 cut(s)	135, 213
TscAI	CASTG	1 cut(s)	231
TspRI	CASTG	1 cut(s)	231
VspI	ATTAAT	1 cut(s)	135
XapI	RAATTY	1 cut(s)	52
XceI	RCATGY	1 cut(s)	157
XmnI	GAANNNNTTC	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.