pycom17g12930

Persulfide dioxygenase ETHE1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0012170
Physical Location & Seq
Forward (+)
10628066 .. 10631245
3180 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 912 bp
ATGCTTCGAATCGGCGTCCTCAGATTTGTCGCTTTCCCTCGTTCTTCTTCCTCTTTCTTCAGTACCTCTTCTCCCAAATTCCTCAATCCTCCTACGATTCGCGACAAGTTCGCTTCCCATTCCCGAACGATGGCTTATACGACGTCGTCGGGTTCTTCCTCCAAGCTCCTCTTCCGGCAGCTCTTCGAGAAGGAGTCCTCCACCTACACTTACTTGCTCGCCGACGTCTCTCACCCCGACAAACCCGCTCTGTTGATTGATCCGGTGGACAAGACGGTGGATAGGGATATCTTACTTGTCAAAGAGTTGGGGTTGAAGTTGATCTACGCCATGAACACTCATGTTCATGCTGATCACGTGACCGGTACCGGTCTTATCAAGACTAAGCTTCCTGGTGTGAAATCTGTCATTTCGAAGGCGAGCAAATCAAAAGCAGACCTTCTGATAGAATCCGGCGATAAAATATATTTTGGCGATCTGTTTTTGGAGGTTAGAGCTACTCCTGGGCATACATTAGGTTGTGTTACCTATGTTACAGGAGATGGGCCTGATCAGCCCCAACCAAGGATGGCTTTTACTGGAGATGCAGTACTCATTCGTGGATGTGGGAGAACTGATTTTCAGGGTGGCAGTTCACAACAACTCTACAAGTCAGTTCATTCACAGATTTTCACATTGCCAAAGGATACACGTATCTATCCTGCTCATGATTACAAGGGATTCACTGTTAGTACTGTGGGGGAGGAGATGCTCTATAATCCCCGGCTCACAAAAGATGAGGAGGAGTTTCAAAGTATCATGGAAAATCTAAAACTGGCATATCCAAAAATGATTGACATAGCTGTACCTGCAAATATGGTTTGTGGATTGCAAGACTTGTCTGAAAGACCTGCCGAGCCCGTAGCCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00920 map00920
Pfam Domains
Protein Families
Lactamase_B

Protein Analysis

304

Amino Acids

33.48

Weight (kDa)

8.28

Isoelectric Point (pI)

34.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lactamase_B PF00753 68 - 236 8e-12 Metallo-beta-lactamase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53580 AT1G53580
fragaria_vesca FvH4_6g38610
malus_domestica MD09G1149000.v1.1 MD17G1135300.v1.1
prunus_persica Prupe.3G177200_v2.0.a1
pyrus_communis pycom09g06850 pycom17g12930
rosa_chinensis RchiOBHm_Chr2g0152061
rosa_laevigata RLG00000020603
rosa_multiflora Rmu_sc0000760.1_g000022
rosa_roxburghii Rroxscaffold_2G00096020
rosa_rugosa Rorug02G0430500 Rorug02G0430500
rosa_samantha Rh2AG491300 Rh2BG503700 Rh2CG477700 Rh2DG514900
rosa_wichuraiana Rw2G040390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 146, 228
Acc36I ACCTGC 2 cut(s) 856, 898
Acc65I GGTACC 1 cut(s) 365
AccB1I GGYRCC 1 cut(s) 365
AccBSI CCGCTC 1 cut(s) 248
AccII CGCG 1 cut(s) 102
AciI CCGC 1 cut(s) 246
AclWI GGATC 1 cut(s) 254
AcsI RAATTY 1 cut(s) 77
AcuI CTGAAG 1 cut(s) 43
AcvI CACGTG 1 cut(s) 358
AcyI GRCGYC 3 cut(s) 15, 143, 225
AfaI GTAC 5 cut(s) 64, 367, 591, 733, 846
AfiI CCNNNNNNNGG 2 cut(s) 130, 564
AflIII ACRYGT 1 cut(s) 689
AgeI ACCGGT 2 cut(s) 362, 368
AgsI TTSAA 2 cut(s) 316, 791
AjnI CCWGG 2 cut(s) 391, 502
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AluBI AGCT 5 cut(s) 166, 181, 388, 497, 842
AluI AGCT 5 cut(s) 166, 181, 388, 497, 842
Alw26I GTCTC 1 cut(s) 232
AlwI GGATC 1 cut(s) 254
AoxI GGCC 1 cut(s) 545
ApeKI GCWGC 1 cut(s) 178
ApoI RAATTY 1 cut(s) 77
AsiGI ACCGGT 2 cut(s) 362, 368
Asp718I GGTACC 1 cut(s) 365
AspS9I GGNCC 1 cut(s) 545
AsuC2I CCSGG 1 cut(s) 763
AsuHPI GGTGA 1 cut(s) 224
AsuII TTCGAA 2 cut(s) 7, 413
BanI GGYRCC 1 cut(s) 365
BanII GRGCYC 1 cut(s) 900
BarI GAAGNNNNNNTAC 2 cut(s) 308, 340
BbrPI CACGTG 1 cut(s) 358
BbvI GCAGC 1 cut(s) 190
BccI CCATC 3 cut(s) 124, 536, 562
BciT130I CCWGG 2 cut(s) 393, 504
BciVI GTATCC 1 cut(s) 679
BclI TGATCA 2 cut(s) 352, 550
BcnI CCSGG 1 cut(s) 763
BcoDI GTCTC 1 cut(s) 232
BfaI CTAG 1 cut(s) 910
BfuAI ACCTGC 2 cut(s) 856, 898
BfuI GTATCC 1 cut(s) 679
BisI GCNGC 1 cut(s) 179
BlsI GCNGC 1 cut(s) 180
BmcAI AGTACT 2 cut(s) 591, 733
Bme1390I CCNGG 3 cut(s) 393, 504, 763
BmgT120I GGNCC 1 cut(s) 545
BmiI GGNNCC 1 cut(s) 367
BmrFI CCNGG 3 cut(s) 393, 504, 763
BmsI GCATC 2 cut(s) 574, 738
BpmI CTGGAG 1 cut(s) 600
Bpu14I TTCGAA 2 cut(s) 7, 413
BpuMI CCSGG 1 cut(s) 763
BsaAI YACGTR 2 cut(s) 358, 692
BsaHI GRCGYC 3 cut(s) 15, 143, 225
BsaJI CCNNGG 3 cut(s) 503, 563, 761
BsaWI WCCGGW 3 cut(s) 262, 362, 368
BsaXI ACNNNNNCTCC 4 cut(s) 55, 85, 573, 603
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 564
Bse118I RCCGGY 2 cut(s) 362, 368
Bse1I ACTGG 2 cut(s) 583, 819
Bse3DI GCAATG 1 cut(s) 674
BseBI CCWGG 2 cut(s) 393, 504
BseDI CCNNGG 3 cut(s) 503, 563, 761
BseGI GGATG 2 cut(s) 573, 608
BseLI CCNNNNNNNGG 2 cut(s) 130, 564
BseMI GCAATG 1 cut(s) 674
BseMII CTCAG 1 cut(s) 34
BseNI ACTGG 2 cut(s) 583, 819
BseRI GAGGAG 4 cut(s) 158, 758, 794, 797
BseXI GCAGC 1 cut(s) 190
Bsh1236I CGCG 1 cut(s) 102
BshFI GGCC 1 cut(s) 547
BshNI GGYRCC 1 cut(s) 365
BshTI ACCGGT 2 cut(s) 362, 368
BsiSI CCGG 6 cut(s) 175, 263, 363, 369, 453, 763
BslI CCNNNNNNNGG 2 cut(s) 130, 564
BsmAI GTCTC 1 cut(s) 232
BsmBI CGTCTC 1 cut(s) 232
BsnI GGCC 1 cut(s) 547
Bsp119I TTCGAA 2 cut(s) 7, 413
Bsp1286I GDGCHC 1 cut(s) 900
Bsp143I GATC 5 cut(s) 259, 321, 352, 475, 550
Bsp68I TCGCGA 1 cut(s) 102
BspACI CCGC 1 cut(s) 246
BspANI GGCC 1 cut(s) 547
BspCNI CTCAG 1 cut(s) 33
BspFNI CGCG 1 cut(s) 102
BspHI TCATGA 1 cut(s) 706
BspLI GGNNCC 1 cut(s) 367
BspMI ACCTGC 2 cut(s) 856, 898
BspPI GGATC 1 cut(s) 254
BspQI GCTCTTC 1 cut(s) 188
BspT104I TTCGAA 2 cut(s) 7, 413
BspT107I GGYRCC 1 cut(s) 365
BsrBI CCGCTC 1 cut(s) 248
BsrDI GCAATG 1 cut(s) 674
BsrFI RCCGGY 2 cut(s) 362, 368
BsrI ACTGG 2 cut(s) 583, 819
BssAI RCCGGY 2 cut(s) 362, 368
BssECI CCNNGG 3 cut(s) 503, 563, 761
BssMI GATC 5 cut(s) 259, 321, 352, 475, 550
BssNI GRCGYC 3 cut(s) 15, 143, 225
BssT1I CCWWGG 1 cut(s) 563
Bst2UI CCWGG 2 cut(s) 393, 504
Bst4CI ACNGT 3 cut(s) 277, 727, 736
Bst6I CTCTTC 3 cut(s) 73, 176, 188
BstACI GRCGYC 3 cut(s) 15, 143, 225
BstBAI YACGTR 2 cut(s) 358, 692
BstBI TTCGAA 2 cut(s) 7, 413
BstC8I GCNNGC 2 cut(s) 219, 421
BstDEI CTNAG 2 cut(s) 20, 384
BstF5I GGATG 2 cut(s) 573, 608
BstFNI CGCG 1 cut(s) 102
BstKTI GATC 5 cut(s) 262, 324, 355, 478, 553
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 5 cut(s) 259, 321, 352, 475, 550
BstMWI GCNNNNNNNGC 2 cut(s) 553, 848
BstNI CCWGG 2 cut(s) 393, 504
BstSCI CCNGG 3 cut(s) 391, 502, 761
BstUI CGCG 1 cut(s) 102
BstV1I GCAGC 1 cut(s) 190
BsuI GTATCC 1 cut(s) 679
BsuRI GGCC 1 cut(s) 547
BtsCI GGATG 2 cut(s) 573, 608
BtsIMutI CAGTG 1 cut(s) 723
BtuMI TCGCGA 1 cut(s) 102
BveI ACCTGC 2 cut(s) 856, 898
Cac8I GCNNGC 2 cut(s) 219, 421
CciI TCATGA 1 cut(s) 706
Cfr10I RCCGGY 2 cut(s) 362, 368
Cfr13I GGNCC 1 cut(s) 545
CseI GACGC 1 cut(s) 4
Csp6I GTAC 5 cut(s) 63, 366, 590, 732, 845
CspAI ACCGGT 2 cut(s) 362, 368
CviAII CATG 5 cut(s) 331, 341, 347, 707, 799
CviQI GTAC 5 cut(s) 63, 366, 590, 732, 845
DdeI CTNAG 2 cut(s) 20, 384
DpnI GATC 5 cut(s) 261, 323, 354, 477, 552
DpnII GATC 5 cut(s) 259, 321, 352, 475, 550
Eam1104I CTCTTC 3 cut(s) 73, 176, 188
EarI CTCTTC 3 cut(s) 73, 176, 188
Eco130I CCWWGG 1 cut(s) 563
Eco24I GRGCYC 1 cut(s) 900
Eco32I GATATC 1 cut(s) 289
Eco57I CTGAAG 1 cut(s) 43
Eco72I CACGTG 1 cut(s) 358
EcoRII CCWGG 2 cut(s) 391, 502
EcoRV GATATC 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 563
EcoT38I GRGCYC 1 cut(s) 900
ErhI CCWWGG 1 cut(s) 563
Esp3I CGTCTC 1 cut(s) 232
FaeI CATG 5 cut(s) 334, 344, 350, 710, 802
FalI AAGNNNNNCTT 6 cut(s) 155, 187, 423, 455, 556, 588
FatI CATG 5 cut(s) 330, 340, 346, 706, 798
FauI CCCGC 1 cut(s) 253
FbaI TGATCA 2 cut(s) 352, 550
Fnu4HI GCNGC 1 cut(s) 179
FokI GGATG 2 cut(s) 580, 615
FriOI GRGCYC 1 cut(s) 900
Fsp4HI GCNGC 1 cut(s) 179
FspBI CTAG 1 cut(s) 910
GluI GCNGC 1 cut(s) 179
GsuI CTGGAG 1 cut(s) 600
HaeIII GGCC 1 cut(s) 547
HapII CCGG 6 cut(s) 175, 263, 363, 369, 453, 763
HgaI GACGC 1 cut(s) 4
Hin1I GRCGYC 3 cut(s) 15, 143, 225
Hin1II CATG 5 cut(s) 334, 344, 350, 710, 802
HindIII AAGCTT 1 cut(s) 386
HinfI GANTC 5 cut(s) 9, 97, 194, 449, 720
HpaII CCGG 6 cut(s) 175, 263, 363, 369, 453, 763
HphI GGTGA 1 cut(s) 224
Hpy166II GTNNAC 2 cut(s) 268, 635
Hpy188I TCNGA 3 cut(s) 23, 444, 883
Hpy188III TCNNGA 5 cut(s) 101, 123, 187, 379, 707
Hpy8I GTNNAC 2 cut(s) 268, 635
Hpy99I CGWCG 4 cut(s) 145, 148, 151, 227
HpyAV CCTTC 3 cut(s) 184, 409, 449
HpyCH4III ACNGT 3 cut(s) 277, 727, 736
HpyCH4IV ACGT 4 cut(s) 143, 225, 357, 691
HpyCH4V TGCA 3 cut(s) 587, 851, 871
HpyF10VI GCNNNNNNNGC 2 cut(s) 553, 848
HpyF3I CTNAG 2 cut(s) 20, 384
HpySE526I ACGT 4 cut(s) 143, 225, 357, 691
Hsp92I GRCGYC 3 cut(s) 15, 143, 225
Hsp92II CATG 5 cut(s) 334, 344, 350, 710, 802
KpnI GGTACC 1 cut(s) 369
Ksp22I TGATCA 2 cut(s) 352, 550
Kzo9I GATC 5 cut(s) 259, 321, 352, 475, 550
LguI GCTCTTC 1 cut(s) 188
LmnI GCTCC 1 cut(s) 171
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 2 cut(s) 574, 738
MaeI CTAG 1 cut(s) 910
MaeII ACGT 4 cut(s) 143, 225, 357, 691
MaeIII GTNAC 3 cut(s) 358, 523, 532
MalI GATC 5 cut(s) 261, 323, 354, 477, 552
MbiI CCGCTC 1 cut(s) 248
MboI GATC 5 cut(s) 259, 321, 352, 475, 550
MboII GAAGA 7 cut(s) 36, 39, 49, 60, 147, 163, 175
MhlI GDGCHC 1 cut(s) 900
MluCI AATT 1 cut(s) 77
MlyI GAGTC 1 cut(s) 203
MslI CAYNNNNRTG 1 cut(s) 345
MspI CCGG 6 cut(s) 175, 263, 363, 369, 453, 763
MspR9I CCNGG 3 cut(s) 393, 504, 763
MvaI CCWGG 2 cut(s) 393, 504
MvnI CGCG 1 cut(s) 102
MwoI GCNNNNNNNGC 2 cut(s) 553, 848
NciI CCSGG 1 cut(s) 763
NdeII GATC 5 cut(s) 259, 321, 352, 475, 550
NlaIII CATG 5 cut(s) 334, 344, 350, 710, 802
NlaIV GGNNCC 1 cut(s) 367
NmuCI GTSAC 1 cut(s) 358
NruI TCGCGA 1 cut(s) 102
NspV TTCGAA 2 cut(s) 7, 413
PagI TCATGA 1 cut(s) 706
PciSI GCTCTTC 1 cut(s) 188
PfeI GAWTC 4 cut(s) 9, 97, 449, 720
PflFI GACNNNGTC 1 cut(s) 145
PinAI ACCGGT 2 cut(s) 362, 368
PkrI GCNGC 1 cut(s) 180
PleI GAGTC 1 cut(s) 202
PmaCI CACGTG 1 cut(s) 358
PmlI CACGTG 1 cut(s) 358
PpsI GAGTC 1 cut(s) 202
Ppu21I YACGTR 2 cut(s) 358, 692
Psp6I CCWGG 2 cut(s) 391, 502
PspCI CACGTG 1 cut(s) 358
PspGI CCWGG 2 cut(s) 391, 502
PspN4I GGNNCC 1 cut(s) 367
PspPI GGNCC 1 cut(s) 545
PsyI GACNNNGTC 1 cut(s) 145
RruI TCGCGA 1 cut(s) 102
RsaI GTAC 5 cut(s) 64, 367, 591, 733, 846
RsaNI GTAC 5 cut(s) 63, 366, 590, 732, 845
RseI CAYNNNNRTG 1 cut(s) 345
SapI GCTCTTC 1 cut(s) 188
SatI GCNGC 1 cut(s) 179
Sau3AI GATC 5 cut(s) 259, 321, 352, 475, 550
Sau96I GGNCC 1 cut(s) 545
ScaI AGTACT 2 cut(s) 591, 733
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 3 cut(s) 393, 504, 763
SduI GDGCHC 1 cut(s) 900
SfaNI GCATC 2 cut(s) 574, 738
SfuI TTCGAA 2 cut(s) 7, 413
SmiMI CAYNNNNRTG 1 cut(s) 345
Sse9I AATT 1 cut(s) 77
SsiI CCGC 1 cut(s) 246
SspMI CTAG 1 cut(s) 910
StyD4I CCNGG 3 cut(s) 391, 502, 761
StyI CCWWGG 1 cut(s) 563
TaaI ACNGT 3 cut(s) 277, 727, 736
TaiI ACGT 4 cut(s) 146, 228, 360, 694
TaqI TCGA 3 cut(s) 7, 186, 413
TasI AATT 1 cut(s) 77
TatI WGTACW 2 cut(s) 589, 731
TfiI GAWTC 4 cut(s) 9, 97, 449, 720
TscAI CASTG 1 cut(s) 730
TseFI GTSAC 1 cut(s) 358
TseI GCWGC 1 cut(s) 178
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 3 cut(s) 335, 347, 647
TspRI CASTG 1 cut(s) 730
Tth111I GACNNNGTC 1 cut(s) 145
XapI RAATTY 1 cut(s) 77
XspI CTAG 1 cut(s) 910
ZraI GACGTC 2 cut(s) 144, 226
ZrmI AGTACT 2 cut(s) 591, 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.